ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf96m04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 940 bits (474), Expect = 0.0 Identities = 573/602 (95%), Gaps = 3/602 (0%) Strand = Plus / Plus Query: 324 tcccacgccggcgatcagcaccgaggggcgctcctgcgcgaggccatgtcgacgcccgtg 383 ||||| |||||||||||||| || ||| | |||||||| ||||||||||||||||||||| Sbjct: 302 tcccatgccggcgatcagcagcgggggcctctcctgcgtgaggccatgtcgacgcccgtg 361 Query: 384 ctgatggccacagcggaccaggcactggtggaggttgaaggacacttccagctcgtgtca 443 ||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 362 ctgatggtcacagcggagcaggcgctggtggaggttgaaggccacttccagctcgtgtca 421 Query: 444 ggcctcccggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagagcgatcgc 503 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 422 ggcctcccggttgtcgacagtgcccgccgatgtgtcggggtcgtcgtcaagagcgatcac 481 Query: 504 gcgagggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatc 563 | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct: 482 gtgagggcttcacatgggccaaagacgaagattgcagatgtgatgacatctccagcaatc 541 Query: 564 acgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatc 623 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 542 acgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaggaagaagatc 601 Query: 624 cacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgac 683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 cacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgac 661 Query: 684 gttcttcgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgcccggta 743 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 662 gttcttcgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgcccggta 721 Query: 744 cttgtggatctgtaaatatgtgtgtccgcggtacttttgagtagcaggcagatcctatag 803 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 722 cttgtggatctgtaaatatgtgtgtccgcggtac-tttgagtagcaggcagatcctatag 780 Query: 804 -atgtaaaagtgtttgtagcctgtatcgc-aaaaatatgcctgggagcatttaggagagc 861 |||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||| Sbjct: 781 tctgtaaaagtgtttgcagtctgtatcgcaaaaaataagcctgggagcatttaggagagc 840 Query: 862 ttttccttgtaaagaagcacgccaggaagattctgttctgtactgtactgtttggtgtct 921 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct: 841 ttttccttgtaaagaagcacgccaggaagcttctgctctgtactgtactgtttggtatct 900 Query: 922 gc 923 || Sbjct: 901 gc 902 Score = 317 bits (160), Expect = 4e-83 Identities = 224/244 (91%), Gaps = 6/244 (2%) Strand = Plus / Plus Query: 49 tagcatccatggcgtgcatcaataccttgcagagctgctccatgttcaagggggccaagg 108 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 36 tagcatccatggcgtgcatcaataccttgcagagctgctccatgttcaaaggggccaaga 95 Query: 109 ccgaggccagaaggggcagcagagccggcagcggcgggagcttcgggtgccgggcctcca 168 |||||||||| || || |||| || ||||||| ||| | ||||||||| |||| Sbjct: 96 gtaaggccagaagaggtag---agcc---agtggcgggacctttgagtgccgggcgtcca 149 Query: 169 cgttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatct 228 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 150 cgttcatggacgggagcgggctccggctcgggctcgacgagaaccccgatgccatcatct 209 Query: 229 ccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacctcc 288 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 ccggggagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacctcc 269 Query: 289 agtc 292 |||| Sbjct: 270 agtc 273
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 880 bits (444), Expect = 0.0 Identities = 549/580 (94%), Gaps = 3/580 (0%) Strand = Plus / Minus Query: 318 ccaccttcccacgccggcgatcagcaccgaggggcgctcctgcgcgaggccatgtcgacg 377 |||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| Sbjct: 612 ccaccttcccacgctgccgatcagcagcgggggccgctcctgcgcgaggccatgtcgacg 553 Query: 378 cccgtgctgatggccacagcggaccaggcactggtggaggttgaaggacacttccagctc 437 ||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| |||||| Sbjct: 552 cccgtgctgatggtcacagcggagcaggcgctggtggaggttgaaggccactttcagctc 493 Query: 438 gtgtcaggcctcccggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagagc 497 ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||| Sbjct: 492 gtgtcaggcctcccggttgtcgacagcgctcgcagatgcgtcggggtcgtcgtgaagagc 433 Query: 498 gatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctcca 557 ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 432 gattgcgcgagggcttcacatgggccaaagacgaagattgcagatgtgatgacatctcca 373 Query: 558 gcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaag 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 gcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaag 313 Query: 618 aagatccacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgc 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 aagatccacagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgc 253 Query: 678 gatgacgttcttcgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgc 737 || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 252 gacgacgttcttcgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgc 193 Query: 738 ccggtacttgtggatctgtaaatatgtgtgtccgcggtacttttgagtagcaggcagatc 797 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 192 ccggtacttgtggatctgtaaatatgtgtgtccgcggtgcttttgagtagcaggcagat- 134 Query: 798 ctatag-atgtaaaagtgtttgtagcctgtatcgcaaaaatatgcctgggagcatttagg 856 |||||| |||||||||| ||||||||||||||||||||||| |||||||| | |||||| Sbjct: 133 ctatagtctgtaaaagtg-ttgtagcctgtatcgcaaaaataagcctgggaacttttagg 75 Query: 857 agagcttttccttgtaaagaagcacgccaggaagattctg 896 |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 74 agagcttttccttgtaaagaagcacgcccggaagcttctg 35 Score = 377 bits (190), Expect = e-101 Identities = 231/244 (94%), Gaps = 3/244 (1%) Strand = Plus / Minus Query: 50 agcatccatggcgtgcatcaataccttgcagagctgctccatgttcaagggggccaaggc 109 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 874 agcatccatggcgtgcatcaataccttgcagagctgctccatgttcaaaggggccaaggc 815 Query: 110 cgaggccagaaggggcagcagagccggcagcggcgggagcttcgggtgccgggcctccac 169 |||||||||||||||| |||| | ||| |||||||||||||||||||| ||||| Sbjct: 814 tgaggccagaaggggcaa---agccaccggcgcagggagcttcgggtgccgggcgtccac 758 Query: 170 gttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatctc 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 gttcatggacgggagcgggctccggctcgggctcgacgagaaccccgacgccatcatctc 698 Query: 230 cggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacctcca 289 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 697 cggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcctacctcca 638 Query: 290 gtcc 293 |||| Sbjct: 637 gtcc 634
>emb|CT828879.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI012L20, full insert sequence Length = 846 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 200 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 259 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 260 cgatctccgcgcctacctccagtc 283
>ref|NM_001055060.1| Oryza sativa (japonica cultivar-group) Os02g0818000 (Os02g0818000) mRNA, partial cds Length = 1265 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 881 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 940 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 941 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 1000 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 1001 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 1060 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 1061 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 1114 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 567 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 623 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 624 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 683 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 684 cgatctccgcgcctacctccagtc 707
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 881 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 940 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 941 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 1000 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 1001 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 1060 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 1061 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 1114 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 567 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 623 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 624 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 683 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 684 cgatctccgcgcctacctccagtc 707
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 449 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 508 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 509 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 568 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 569 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 628 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 629 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 682 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 135 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 191 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 192 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 251 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 252 cgatctccgcgcctacctccagtc 275
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690 Score = 147 bits (74), Expect = 9e-32 Identities = 127/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 200 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 259 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||| ||| ||||||||||| Sbjct: 260 cgatctccacgcctacctccagtc 283
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 449 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 508 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 509 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 568 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 569 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 628 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 629 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 682 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 135 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 191 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 192 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 251 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 252 cgatctccgcgcctacctccagtc 275
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 457 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 516 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 517 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 576 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 577 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 636 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 637 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 690 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 143 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 199 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 200 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 259 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 260 cgatctccgcgcctacctccagtc 283
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 450 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 509 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 510 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 569 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 570 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 629 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 630 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 683 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 136 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 192 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 193 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 252 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 253 cgatctccgcgcctacctccagtc 276
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 7e-51 Identities = 202/234 (86%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 462 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 521 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 522 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 581 Query: 607 tgctcaagaagaagatccacagattaccgatagtaaaccaggacaatcaagtaataggta 666 |||| ||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||| Sbjct: 582 tgctaaagaagaagatccacagattaccaattgtaaatcaggacagacaagtgataggta 641 Query: 667 tagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 |||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 642 tagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 695 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 148 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 204 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 205 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 264 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 265 cgatctccgcgcctacctccagtc 288
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 1e-46 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Plus Query: 487 tcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggacgaagattgcagatgtga 546 |||||||||| || || || |||||||| |||||||||| ||||||||||||||| |||| Sbjct: 715 tcgtcaagagtgaccgggccagggcttctcatgggtcaaagacgaagattgcagaagtga 774 Query: 547 tgacatctccagcaatcacgctatcatgcgataaaacagtgaccgatgccgcagctctga 606 |||| |||||||| ||||| ||| ||| || |||||||| | ||||| |||||||||| Sbjct: 775 tgacctctccagccatcactctaccatctgacaaaacagtaatggatgcggcagctctga 834 Query: 607 tgctcaagaagaa-gatccacagattaccgatagtaaaccaggacaatcaagtaataggt 665 |||| |||||||| ||||||||||||||| || ||||| ||||||| ||||| |||||| Sbjct: 835 tgctaaagaagaaggatccacagattaccaattgtaaatcaggacagacaagtgataggt 894 Query: 666 atagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 895 atagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 949 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 401 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 457 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 458 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 517 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 518 cgatctccgcgcctacctccagtc 541
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 196 bits (99), Expect = 1e-46 Identities = 301/370 (81%) Strand = Plus / Plus Query: 350 ggcgctcctgcgcgaggccatgtcgacgcccgtgctgatggccacagcggaccaggcact 409 |||||||||| ||||| ||||||| || ||||||||| |||||||||| |||||| | || Sbjct: 225 ggcgctcctgagcgagaccatgtccacacccgtgctggtggccacagcagaccagaccct 284 Query: 410 ggtggaggttgaaggacacttccagctcgtgtcaggcctcccggttgtcgacagcgcccg 469 || ||| || || | |||||| || |||||| || || ||||| |||||||||| || Sbjct: 285 ggaggacgtcgagtgccacttcgaggccgtgtcggggcttccggtcgtcgacagcggcct 344 Query: 470 ccgatgtgtcggggtcgtcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggac 529 | |||| |||||||| ||||||||| ||| || || || || || |||||||| | ||| Sbjct: 345 cagatgcgtcggggtgatcgtcaagaacgaccgggcaagagcctctcatgggtccaagac 404 Query: 530 gaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataaaacagtgac 589 |||||| | || ||||||||||||||||| ||||| ||||| | || ||||| |||| Sbjct: 405 gaagatatcggaagtgatgacatctccagctatcacactatcgtctgacaaaaccgtgat 464 Query: 590 cgatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccagga 649 ||||| || | ||| ||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 465 ggatgctgctgttctcatgctcaagaagaagatccacagattaccagttgtaaaccagga 524 Query: 650 caatcaagtaataggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgct 709 | |||||||||||||||||||||| ||| |||||||||| |||||| | |||| | Sbjct: 525 cgnnnnngtaataggtatagttacccgcgctgatgttcttcgcgtgttggaaggcatgtt 584 Query: 710 gaagttttag 719 |||| ||||| Sbjct: 585 gaagatttag 594 Score = 105 bits (53), Expect = 3e-19 Identities = 90/104 (86%) Strand = Plus / Plus Query: 189 ctccggctcgggctcgacgagaaccccgacgccatcatctccggcgagtggcccgagaac 248 |||||||||| ||| |||||||||||||| || |||||||| |||||||| |||| Sbjct: 82 ctccggctcgagctggacgagaaccccgaggcgatcatctcnnnnncgtggcccgggaac 141 Query: 249 ttctccctcctcagctacgacgacctccgcgcatacctccagtc 292 | |||||||||||||||||||||||||||||| |||||| |||| Sbjct: 142 tgctccctcctcagctacgacgacctccgcgcctacctcgagtc 185
>gb|DQ246028.1| Zea mays clone 5080 mRNA sequence Length = 989 Score = 186 bits (94), Expect = 1e-43 Identities = 301/370 (81%) Strand = Plus / Plus Query: 350 ggcgctcctgcgcgaggccatgtcgacgcccgtgctgatggccacagcggaccaggcact 409 |||||||||| ||||| ||||||| || ||||||||| | |||||||| |||||| | || Sbjct: 376 ggcgctcctgagcgagaccatgtccacacccgtgctggtagccacagcagaccagaccct 435 Query: 410 ggtggaggttgaaggacacttccagctcgtgtcaggcctcccggttgtcgacagcgcccg 469 || ||| || || | |||||| || |||||| || || ||||| |||||||||| || Sbjct: 436 ggaggacgtcgagtgccacttcgaggccgtgtcggggcttccggtcgtcgacagcggcct 495 Query: 470 ccgatgtgtcggggtcgtcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggac 529 | |||| |||||||| ||||||||| ||| || || || || || |||||||| | ||| Sbjct: 496 cagatgcgtcggggtgatcgtcaagaacgaccgggcaagagcctctcatgggtccaagac 555 Query: 530 gaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataaaacagtgac 589 ||||| | || |||||||| |||||||| ||||| || || | || ||||| |||| Sbjct: 556 caagatctcggaagtgatgacctctccagccatcacactgtcgtctgacaaaaccgtgat 615 Query: 590 cgatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccagga 649 ||||| || | ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 616 ggatgctgctgttctgatgctcaagaagaagatccacagattaccagttgtaaaccagga 675 Query: 650 caatcaagtaataggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgct 709 | | |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| | Sbjct: 676 cgaaaaagtaataggtatagttacccgcgctgatgttcttcgcgtgttggaaggcatgtt 735 Query: 710 gaagttttag 719 |||| ||||| Sbjct: 736 gaagatttag 745 Score = 119 bits (60), Expect = 2e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 189 ctccggctcgggctcgacgagaaccccgacgccatcatctccggcgagtggcccgagaac 248 |||||||||| ||| |||||||||||||| || |||||||| || | |||||||| |||| Sbjct: 233 ctccggctcgagctggacgagaaccccgaggcgatcatctcgggtgcgtggcccgggaac 292 Query: 249 ttctccctcctcagctacgacgacctccgcgcatacctccagtc 292 | |||||||||||||||||||||||||||||| |||||| |||| Sbjct: 293 tgctccctcctcagctacgacgacctccgcgcctacctcgagtc 336
>gb|DQ246027.1| Zea mays clone 5078 mRNA sequence Length = 996 Score = 186 bits (94), Expect = 1e-43 Identities = 301/370 (81%) Strand = Plus / Plus Query: 350 ggcgctcctgcgcgaggccatgtcgacgcccgtgctgatggccacagcggaccaggcact 409 |||||||||| ||||| ||||||| || ||||||||| | |||||||| |||||| | || Sbjct: 383 ggcgctcctgagcgagaccatgtccacacccgtgctggtagccacagcagaccagaccct 442 Query: 410 ggtggaggttgaaggacacttccagctcgtgtcaggcctcccggttgtcgacagcgcccg 469 || ||| || || | |||||| || |||||| || || ||||| |||||||||| || Sbjct: 443 ggaggacgtcgagtgccacttcgaggccgtgtcggggcttccggtcgtcgacagcggcct 502 Query: 470 ccgatgtgtcggggtcgtcgtcaagagcgatcgcgcgagggcttcacatgggtcaaggac 529 | |||| |||||||| ||||||||| ||| || || || || || |||||||| | ||| Sbjct: 503 cagatgcgtcggggtgatcgtcaagaacgaccgggcaagagcctctcatgggtccaagac 562 Query: 530 gaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataaaacagtgac 589 ||||| | || |||||||| |||||||| ||||| || || | || ||||| |||| Sbjct: 563 caagatctcggaagtgatgacctctccagccatcacactgtcgtctgacaaaaccgtgat 622 Query: 590 cgatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccagga 649 ||||| || | ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 623 ggatgctgctgttctgatgctcaagaagaagatccacagattaccagttgtaaaccagga 682 Query: 650 caatcaagtaataggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgct 709 | | |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| | Sbjct: 683 cgaaaaagtaataggtatagttacccgcgctgatgttcttcgcgtgttggaaggcatgtt 742 Query: 710 gaagttttag 719 |||| ||||| Sbjct: 743 gaagatttag 752 Score = 119 bits (60), Expect = 2e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 189 ctccggctcgggctcgacgagaaccccgacgccatcatctccggcgagtggcccgagaac 248 |||||||||| ||| |||||||||||||| || |||||||| || | |||||||| |||| Sbjct: 240 ctccggctcgagctggacgagaaccccgaggcgatcatctcgggtgcgtggcccgggaac 299 Query: 249 ttctccctcctcagctacgacgacctccgcgcatacctccagtc 292 | |||||||||||||||||||||||||||||| |||||| |||| Sbjct: 300 tgctccctcctcagctacgacgacctccgcgcctacctcgagtc 343
>ref|NM_001055061.1| Oryza sativa (japonica cultivar-group) Os02g0817900 (Os02g0817900) mRNA, complete cds Length = 4216 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Minus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 3206 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 3150 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 3149 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 3090 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 3089 cgatctccgcgcctacctccagtc 3066 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 591 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 650 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 2473 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 2414 Query: 651 aatcaagtaataggt 665 | ||||| |||||| Sbjct: 2413 agacaagtgataggt 2399 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 662 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 2270 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 2212 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 521 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 580 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 2633 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 2574 Query: 581 aacagt 586 |||||| Sbjct: 2573 aacagt 2568
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 35110983 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 35111039 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 35111040 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 35111099 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 35111100 cgatctccgcgcctacctccagtc 35111123 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 591 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 650 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 35111716 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 35111775 Query: 651 aatcaagtaataggt 665 | ||||| |||||| Sbjct: 35111776 agacaagtgataggt 35111790 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 662 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 35111919 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 35111977 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 521 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 580 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 35111556 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 35111615 Query: 581 aacagt 586 |||||| Sbjct: 35111616 aacagt 35111621 Score = 50.1 bits (25), Expect = 0.015 Identities = 34/37 (91%) Strand = Plus / Plus Query: 221 catcatctccggcgagtggcccgagaacttctccctc 257 |||| ||||||||||||||| ||| |||||||||||| Sbjct: 8855051 catcgtctccggcgagtggctcgataacttctccctc 8855087
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 6339 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 6395 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 6396 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 6455 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 6456 cgatctccgcgcctacctccagtc 6479 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 591 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 650 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 7072 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 7131 Query: 651 aatcaagtaataggt 665 | ||||| |||||| Sbjct: 7132 agacaagtgataggt 7146 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 662 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 7275 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 7333 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 521 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 580 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 6912 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 6971 Query: 581 aacagt 586 |||||| Sbjct: 6972 aacagt 6977
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 84146 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 84202 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 84203 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 84262 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 84263 cgatctccgcgcctacctccagtc 84286 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 591 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 650 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 84879 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 84938 Query: 651 aatcaagtaataggt 665 | ||||| |||||| Sbjct: 84939 agacaagtgataggt 84953 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 662 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 85082 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 85140 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 521 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 580 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 84719 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 84778 Query: 581 aacagt 586 |||||| Sbjct: 84779 aacagt 84784
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 155 bits (78), Expect = 4e-34 Identities = 128/144 (88%), Gaps = 3/144 (2%) Strand = Plus / Minus Query: 149 cttcgggtgccgggcctccacgttcatggacgggagcgggctccggctcgggctcgacga 208 |||| |||||||||| || |||||||||||||||||| |||||||| | | ||||||| Sbjct: 3207 cttccggtgccgggcatcgacgttcatggacgggagc---ctccggctagagatcgacga 3151 Query: 209 gaaccccgacgccatcatctccggcgagtggcccgagaacttctccctcctcagctacga 268 |||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 3150 gaaccctgaagccatcatctccggtgagtggccggagaacttctccctgctcagctacga 3091 Query: 269 cgacctccgcgcatacctccagtc 292 ||| |||||||| ||||||||||| Sbjct: 3090 cgatctccgcgcctacctccagtc 3067 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 591 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 650 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 2474 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 2415 Query: 651 aatcaagtaataggt 665 | ||||| |||||| Sbjct: 2414 agacaagtgataggt 2400 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 662 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 720 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 2271 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 2213 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 521 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 580 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 2634 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 2575 Query: 581 aacagt 586 |||||| Sbjct: 2574 aacagt 2569
>ref|NM_001058636.1| Oryza sativa (japonica cultivar-group) Os04g0136700 (Os04g0136700) mRNA, complete cds Length = 962 Score = 101 bits (51), Expect = 5e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 226 tctccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacc 285 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 285 tctccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacc 344 Query: 286 tccagtc 292 || |||| Sbjct: 345 tcgagtc 351
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 101 bits (51), Expect = 5e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 226 tctccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacc 285 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 2416342 tctccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacc 2416283 Query: 286 tccagtc 292 || |||| Sbjct: 2416282 tcgagtc 2416276
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20, complete sequence Length = 138572 Score = 101 bits (51), Expect = 5e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 226 tctccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacc 285 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 32244 tctccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacc 32185 Query: 286 tccagtc 292 || |||| Sbjct: 32184 tcgagtc 32178
>dbj|AK066843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082B01, full insert sequence Length = 964 Score = 101 bits (51), Expect = 5e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 226 tctccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacc 285 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 287 tctccggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacc 346 Query: 286 tccagtc 292 || |||| Sbjct: 347 tcgagtc 353
>emb|CR855019.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147B06, complete sequence Length = 85052 Score = 93.7 bits (47), Expect = 1e-15 Identities = 62/67 (92%) Strand = Plus / Minus Query: 226 tctccggcgagtggcccgagaacttctccctcctcagctacgacgacctccgcgcatacc 285 |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 23285 tctcgggcgagtggccggagaacttctccctcctcagctacgccgacctccgcgcctacc 23226 Query: 286 tccagtc 292 || |||| Sbjct: 23225 tcgagtc 23219
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 50.1 bits (25), Expect = 0.015 Identities = 34/37 (91%) Strand = Plus / Plus Query: 221 catcatctccggcgagtggcccgagaacttctccctc 257 |||| ||||||||||||||| ||| |||||||||||| Sbjct: 60069 catcgtctccggcgagtggctcgataacttctccctc 60105
>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052K15 Length = 156250 Score = 50.1 bits (25), Expect = 0.015 Identities = 34/37 (91%) Strand = Plus / Plus Query: 221 catcatctccggcgagtggcccgagaacttctccctc 257 |||| ||||||||||||||| ||| |||||||||||| Sbjct: 154130 catcgtctccggcgagtggctcgataacttctccctc 154166
>gb|AC116389.12| Mus musculus chromosome 7, clone RP23-21B1, complete sequence Length = 236139 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Minus Query: 68 caataccttgcagagctgctcca 90 ||||||||||||||||||||||| Sbjct: 100404 caataccttgcagagctgctcca 100382
>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence Length = 218608 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Plus Query: 405 gcactggtggaggttgaaggaca 427 ||||||||||||||||||||||| Sbjct: 45589 gcactggtggaggttgaaggaca 45611
>gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosome 12, complete sequence Length = 208332 Score = 46.1 bits (23), Expect = 0.23 Identities = 23/23 (100%) Strand = Plus / Plus Query: 405 gcactggtggaggttgaaggaca 427 ||||||||||||||||||||||| Sbjct: 192989 gcactggtggaggttgaaggaca 193011
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.92 Identities = 22/22 (100%) Strand = Plus / Minus Query: 796 tcctatagatgtaaaagtgttt 817 |||||||||||||||||||||| Sbjct: 101188 tcctatagatgtaaaagtgttt 101167
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gcgggctccggctcgggctcg 204 ||||||||||||||||||||| Sbjct: 4300498 gcgggctccggctcgggctcg 4300518
>ref|XM_001143845.1| PREDICTED: Pan troglodytes hypothetical protein LOC741322 (LOC741322), mRNA Length = 768 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 gcggcgggagcttcgggtgccgggc 163 ||||||||||||| ||||||||||| Sbjct: 63 gcggcgggagcttggggtgccgggc 87
>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence Length = 186659 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gcgggctccggctcgggctcg 204 ||||||||||||||||||||| Sbjct: 12555 gcgggctccggctcgggctcg 12535
>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence Length = 168986 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gcgggctccggctcgggctcg 204 ||||||||||||||||||||| Sbjct: 30479 gcgggctccggctcgggctcg 30459
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 34905 ggacgggcgcgggctcgggctcgggctcg 34933 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 64607 ggacgggcgcgggctcgggctcgggctcg 64635 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 71030 ggacgggcgcgggctcgggctcgggctcg 71058 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 80055 ggacgggcgcgggctcgggctcgggctcg 80083 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 89238 ggacgggcgcgggctcgggctcgggctcg 89266 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 176 ggacgggagcgggctccggctcgggctcg 204 ||||||| |||||||| |||||||||||| Sbjct: 98299 ggacgggcgcgggctcgggctcgggctcg 98327
>ref|NM_204264.1| Gallus gallus suppressor of fused homolog (Drosophila) (SUFU), mRNA gb|AF487888.1| Gallus gallus suppressor of fused mRNA, complete cds Length = 1455 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gcgggctccggctcgggctcg 204 ||||||||||||||||||||| Sbjct: 43 gcgggctccggctcgggctcg 63
>gb|AC093881.2| Homo sapiens BAC clone RP11-655B23 from 4, complete sequence Length = 181245 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 gcggcgggagcttcgggtgccgggc 163 ||||||||||||| ||||||||||| Sbjct: 45056 gcggcgggagcttggggtgccgggc 45080
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgagaaccccgacgccatcatctcc 230 |||| |||||||||||||||||||| Sbjct: 439047 cgagcaccccgacgccatcatctcc 439071
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 cgagaaccccgacgccatcatctcc 230 |||| |||||||||||||||||||| Sbjct: 87690 cgagcaccccgacgccatcatctcc 87714
>gb|U29204.1|HSU29204 Human mineralocorticoid receptor (hmr1a) gene, 5' untranslated region Length = 2105 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 gcggcgggagcttcgggtgccgggc 163 ||||||||||||| ||||||||||| Sbjct: 623 gcggcgggagcttggggtgccgggc 599
>gb|U48393.1|HSU48393 Human mineralocorticoid receptor alpha (hMR) gene, promoter, exon 1 Length = 1771 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 gcggcgggagcttcgggtgccgggc 163 ||||||||||||| ||||||||||| Sbjct: 643 gcggcgggagcttggggtgccgggc 619
>emb|X97925.1|HSHMRPROM H.sapiens hMR gene, complete promoter region Length = 8661 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 gcggcgggagcttcgggtgccgggc 163 ||||||||||||| ||||||||||| Sbjct: 2216 gcggcgggagcttggggtgccgggc 2192 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 138,451,295 Number of extensions: 7530127 Number of successful extensions: 145264 Number of sequences better than 10.0: 43 Number of HSP's gapped: 145244 Number of HSP's successfully gapped: 81 Length of query: 964 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 941 Effective length of database: 18,503,978,556 Effective search space: 17412243821196 Effective search space used: 17412243821196 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
