ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK107973:Os06g0110200 32 0.43
2AK068188:Os03g0399600 30 2.2
3AK068878: 28 6.3

>AK107973:Os06g0110200 |
          Length = 103
 Score = 32.0 bits (71), Expect = 0.43
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 183 RSHDEKELXXXXXXXXXXXXXXQLHQEKAAHREDAM 290
           RSH E+EL              +LHQ+KA HRE+A+
Sbjct: 36  RSHAERELAHERAKARVAAAKMELHQDKALHREEAI 71



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>AK068188:Os03g0399600 |
          Length = 99

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 217 AAPPRSLPLRRSCTRKRPRTARMP 288
           ++PP S P RRS  R+RPR A +P
Sbjct: 52  SSPPSSAPPRRSPLRRRPRFAAVP 75



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>AK068878: |
          Length = 409

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 AAPPRSLPLRRSCTRKRPRTARMPWR 294
           A+P  +LP R +  R+RPR AR P R
Sbjct: 11  ASPRPTLPSRSASCRRRPRPARTPAR 36


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 15,063,128
Number of extensions: 304724
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 15,399,855
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,475,837
Effective search space: 1629568854
Effective search space used: 1629568854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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