Clone Name | FLbaf96k01 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os03g27320:12003.t02408:unspliced-genomic carrier/ steroid binding protein, putative, expressed| Length = 3257 Score = 37.3 bits (75), Expect = 0.14 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 / +3 Query: 662 PGSPASMRLHFPPEQLS*IIPISHGCCLQCLDSGAIVRMLFSKC 531 P S +H P QLS* +P S CC+ L S ++ +L +KC Sbjct: 2937 PSVAFSFFIHHLPWQLS*PVPKSARCCIFHLKSSCVIFLLVAKC 3068
>LOC_Os07g42960:12007.t03944:unspliced-genomic phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast| precursor, putative, expressed Length = 3759 Score = 34.5 bits (69), Expect = 0.97 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -3 / +1 Query: 695 KCFYWLMEEAVPGSPASMRLHFPPEQ 618 +CF W V G+PA+ R H PP++ Sbjct: 247 RCFRWRCGRGVVGAPAAARRHVPPDE 324
>LOC_Os06g28250:12006.t02529:unspliced-genomic conserved hypothetical protein| Length = 4305 Score = 34.1 bits (68), Expect = 1.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 / -1 Query: 561 PRI*ALKTAAV*DRNYSTQLFWWEMESHRC 650 PR L T V D N+++Q+ WW +S+RC Sbjct: 3345 PRRHLLPT*IVFDTNHASQIAWWARQSNRC 3256
>LOC_Os03g04470:12003.t05673:unspliced-genomic expressed protein| Length = 1612 Score = 33.6 bits (67), Expect = 1.8 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = -1 / -2 Query: 454 LGPLIRFDQSRAPSSSSGRAVAGFQRSSP 368 + P R D++RA SSS+ RA AG +RSSP Sbjct: 273 VAPRPRDDEARAESSSTRRAGAGRRRSSP 187
>LOC_Os01g21144:12001.t01851:unspliced-genomic expressed protein| Length = 3576 Score = 33.6 bits (67), Expect = 1.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 / -1 Query: 120 CWPRISLGRQRPNSDRR*GRWPPPVDW 40 CWPR + +RP + RR RWP W Sbjct: 2610 CWPRRARCCRRPPTPRRAPRWPRSAPW 2530
>LOC_Os09g11680:12009.t00957:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4434 Score = 33.1 bits (66), Expect = 2.5 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = -3 / +3 Query: 656 SPASMRLHFPPEQLS*IIPISHGCCL 579 SP+S+ + PP+++S + PIS+ CC+ Sbjct: 1746 SPSSVPISPPPDRVSSVFPISYICCI 1823
>LOC_Os07g26350:12007.t02331:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4582 Score = 33.1 bits (66), Expect = 2.5 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +3 / +1 Query: 369 GDDRWNPATARPEEEEGAR 425 G DRW P PE EEGAR Sbjct: 118 GPDRWAPPVGDPEREEGAR 174
>LOC_Os01g17402:12001.t01584:unspliced-genomic cyclin-A2, putative, expressed| Length = 3590 Score = 33.1 bits (66), Expect = 2.5 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 / -3 Query: 318 AGIPFPPSEETQKSPIAGDDRWNPATARPEEEEGAR 425 A + PP + T++ AGDDRW P E+E R Sbjct: 333 AAMRAPPEQRTRQRTRAGDDRWPPYLPCVPEQEHRR 226
>LOC_Os06g28950:12006.t02599:unspliced-genomic FKBP-type peptidyl-prolyl cis-trans isomerase, putative, expressed| Length = 855 Score = 32.7 bits (65), Expect = 3.4 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 / +3 Query: 24 QATLATNQPGEAIFLISGQSSAAASLVKFEASRINLAPFSPLVEPPS 164 +A + +QP + ++A A VK+E RI++ P P +PP+ Sbjct: 537 KALVKYHQPATLFLQVYTVAAAGAVFVKYEKERISVWPGPPATKPPA 677
>LOC_Os06g11700:12006.t01047:unspliced-genomic phi-1-like phosphate-induced protein, putative, expressed| Length = 1265 Score = 32.7 bits (65), Expect = 3.4 Identities = 12/35 (34%), Positives = 15/35 (42%) Frame = +3 / -3 Query: 327 PFPPSEETQKSPIAGDDRWNPATARPEEEEGARDW 431 P PPS + + RW P TARP + W Sbjct: 393 PAPPSSRSSRWTTGSRRRWRPTTARPRASSRSVAW 289
>LOC_Os05g27520:12005.t02403:unspliced-genomic expressed protein| Length = 3570 Score = 32.7 bits (65), Expect = 3.5 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 / +3 Query: 727 YKTKMAYGVHKNVSTG*WKKRSRDLQHLCDS 635 Y T A VH N+S W+ + DLQH C S Sbjct: 1719 YSTVKAKSVHMNMSC*IWEYKHFDLQHFCCS 1811
>LOC_Os05g26890:12005.t02344:unspliced-genomic guanine nucleotide-binding protein alpha-1 subunit, putative,| expressed Length = 5797 Score = 32.7 bits (65), Expect = 3.5 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 / +3 Query: 727 YKTKMAYGVHKNVSTG*WKKRSRDLQHLCDS 635 Y T A VH N+S W+ + DLQH C S Sbjct: 2739 YSTVKAKSVHMNMSC*IWEYKHFDLQHFCCS 2831
>LOC_Os05g12690:12005.t01095:unspliced-genomic flagelliform silk protein, putative| Length = 2617 Score = 32.2 bits (64), Expect(2) = 3.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 / -1 Query: 318 AGIPFPPSEETQKSPIAGDDRWNPATA 398 A P + + SP GD+RWNPAT+ Sbjct: 1246 ADAALPSPKPSLGSPFYGDNRWNPATS 1166 Score = 21.7 bits (41), Expect(2) = 3.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 / -2 Query: 604 IIQLSCSGGKWSRIDAGDPG 663 I +L+ GG+W R GD G Sbjct: 108 IARLALVGGRWLRGVHGDGG 49
>LOC_Os12g17160:12012.t01568:unspliced-genomic flavonol 3-sulfotransferase, putative, expressed| Length = 2390 Score = 26.7 bits (52), Expect(2) = 4.6 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = -2 / +1 Query: 642 ATPFPTRTAELNNSYLTRLLSSVPRFGGNREDALLQMCNLASQKACP 502 A P P + +S LTR +S G + +D ++++ + + +CP Sbjct: 322 AAPTPLPVTGIRSSVLTRTTASRSWRGRSLKDGVVRLMSCRRRGSCP 462 Score = 22.6 bits (43), Expect(2) = 4.6 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = -3 / +3 Query: 683 WLMEEAVPGSPASMRLHFP 627 WLME +PG A R P Sbjct: 180 WLMEYTLPGIMAIQRSFVP 236
>LOC_Os10g25850:12010.t02001:unspliced-genomic nuclear transcription factor Y subunit A-7, putative, expressed| Length = 9358 Score = 32.2 bits (64), Expect = 4.8 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -2 / -1 Query: 621 TAELNNSYLTRLLSSVPRFGGNREDALLQMCNLASQKACPFYPTHAWLA 475 T + ++ Y T LLSS+ R G + LL C K+ F AWLA Sbjct: 5398 TTDWDDMYPTALLSSILRVGSDHIPLLLDTCEGIIVKSKYFKFESAWLA 5252
>LOC_Os03g17350:12003.t01512:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,| expressed Length = 2727 Score = 25.8 bits (50), Expect(2) = 6.1 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +2 / -3 Query: 530 HIWRRASSRLPPNLG 574 H WRRA +RLP G Sbjct: 925 HRWRRAGARLPTRRG 881 Score = 23.1 bits (44), Expect(2) = 6.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 / -2 Query: 694 FYVLHRPSWSCNSNL*FSWTL 756 F L RPSWS +S F ++L Sbjct: 857 FAALFRPSWSISSFTRFFFSL 795
>LOC_Os08g30210:12008.t02774:unspliced-genomic 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed| Length = 1131 Score = 31.8 bits (63), Expect = 6.5 Identities = 12/40 (30%), Positives = 16/40 (40%) Frame = +3 / +2 Query: 327 PFPPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLIS 446 P P T P + D W+P RP + WS + S Sbjct: 161 PRPSRSSTSPRPTSTGDGWSPR*GRPPRRSASSRWSTMAS 280
>LOC_Os08g30150:12008.t02768:unspliced-genomic desacetoxyvindoline 4-hydroxylase, putative, expressed| Length = 1454 Score = 31.8 bits (63), Expect = 6.5 Identities = 11/38 (28%), Positives = 16/38 (42%) Frame = +3 / +1 Query: 333 PPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLIS 446 P T P + D W+P + RP + WS + S Sbjct: 148 PRPTSTSPRPTSTGDGWSPRSGRPRRRSASSRWSTMAS 261
>LOC_Os06g30179:12006.t02721:unspliced-genomic cytochrome P450 71D10, putative, expressed| Length = 16794 Score = 31.8 bits (63), Expect = 6.5 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +3 / -3 Query: 369 GDDRWNPATARPEEEEGARDWSNLISGPN 455 G DRW P P E EG W++ P+ Sbjct: 11917 GSDRWGPPVGVPGEREGWLGWASACGRPS 11831
>LOC_Os04g10380:12004.t00871:unspliced-genomic expressed protein| Length = 21537 Score = 31.8 bits (63), Expect = 6.5 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 / -2 Query: 327 PFPPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLIS 446 P PP + SP AGD NPATA + + LIS Sbjct: 368 PPPPPSSARTSPDAGDAPTNPATAAATTSTTTHNPTRLIS 249
>LOC_Os08g24420:12008.t02212:unspliced-genomic SWP, putative, expressed| Length = 7034 Score = 31.8 bits (63), Expect = 6.5 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 / +2 Query: 512 FCEARLHIWRRASSRLPPN 568 FCE+++H+WRR S +P N Sbjct: 5825 FCESKVHLWRR*SHCIPCN 5881
>LOC_Os06g04520:12006.t00342:unspliced-genomic expressed protein| Length = 10822 Score = 29.0 bits (57), Expect(2) = 6.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +3 / -3 Query: 81 SSAAASLVKFEASRINLAPFSPLVEPP 161 S A SL+ FEAS N + PLV PP Sbjct: 9401 SQAENSLLVFEASLRNSLMYIPLVNPP 9321 Score = 25.8 bits (50), Expect(2) = 6.9 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 / -3 Query: 354 KSPIAGDDRWNPATARPEEEEG 419 + IAG +RW+PA + EG Sbjct: 89 RDAIAGGERWSPAVEQMPRGEG 24
>LOC_Os10g18390:12010.t01387:unspliced-genomic hypothetical protein| Length = 3005 Score = 31.3 bits (62), Expect = 8.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 / +3 Query: 713 GLWST*KCFYWLMEEAVPGSPASMRLHF 630 G WS FY++ ++ P SP RLHF Sbjct: 1278 GHWSRYFAFYFIQHDSSPASPYLPRLHF 1361
>LOC_Os09g32010:12009.t02818:unspliced-genomic ternary complex factor MIP1, putative, expressed| Length = 4978 Score = 31.3 bits (62), Expect = 8.9 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 / -3 Query: 21 SQATLATNQPGEAIFLISGQSSAAASLVKFEASRINL 131 SQA L NQ + +F+ GQ S S V + SRI++ Sbjct: 3110 SQAFLRRNQTCQHLFVSLGQLSCLCSFVHYSLSRIHI 3000
>LOC_Os06g29440:12006.t02648:unspliced-genomic expressed protein| Length = 2393 Score = 31.3 bits (62), Expect = 8.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 / +1 Query: 713 GLWST*KCFYWLMEEAVPGSPASMRLHF 630 G WS FY++ ++ P SP RLHF Sbjct: 1597 GRWSRYFAFYFVQHDSSPASPYLPRLHF 1680
>LOC_Os05g16290:12005.t01399:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 5815 Score = 31.3 bits (62), Expect = 8.9 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = +3 / -3 Query: 327 PFPPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLISGPN*QSVSDSRAT 485 P+P + SP AG R P + R W I P S S RA+ Sbjct: 203 PWPAASPAS*SPAAGSSRTPPPPTSASDRRSTRPWRLAIKAPPASSCSMWRAS 45
>LOC_Os02g38760:12002.t03514:unspliced-genomic hypothetical protein| Length = 3816 Score = 31.3 bits (62), Expect = 8.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 / +1 Query: 713 GLWST*KCFYWLMEEAVPGSPASMRLHF 630 G WS FY++ ++ P SP RLHF Sbjct: 3526 GRWSRYFAFYFVQHDSSPASPYLPRLHF 3609
>LOC_Os11g36130:12011.t03160:unspliced-genomic hypothetical protein| Length = 953 Score = 31.3 bits (62), Expect = 9.0 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 / +1 Query: 700 VLHRPSWSCNSNL*FSWTL 756 +L RP+W C+SN+ SW L Sbjct: 283 ILRRPNWYCSSNMENSWCL 339
>LOC_Os10g08610:12010.t00681:unspliced-genomic hypothetical protein| Length = 3353 Score = 31.3 bits (62), Expect = 9.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -2 / -2 Query: 99 GRQRPNSDRR*GRWPPPVDW 40 GRQRP +DR R+ PP+ W Sbjct: 574 GRQRPRTDRCTARYTPPLIW 515
>LOC_Os09g29790:12009.t02657:unspliced-genomic expressed protein| Length = 8110 Score = 31.3 bits (62), Expect = 9.0 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 / -3 Query: 729 ITRPRWPMEYIKMFLLVDGRSGPGISSIYATPFPTRTAELNNSYL 595 I+ P +P+ + L G YATPFPT TA + SY+ Sbjct: 4430 ISLPLYPLRELDTS*LTAGYK*HTTLMAYATPFPTMTALIKPSYV 4296
>LOC_Os04g52120:12004.t04688:unspliced-genomic potassium transporter 15, putative, expressed| Length = 5122 Score = 31.3 bits (62), Expect = 9.0 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -2 / -1 Query: 252 PRRTAIAGVMRIRPTVDPNHV*VMGWLDGVRVVQLKGRR 136 P++ + GVMR + NH ++ WL+ ++V+ L RR Sbjct: 3340 PKKLRLLGVMREERRDNLNHRSIIQWLEIIKVMWLNDRR 3224
>LOC_Os04g42360:12004.t03788:unspliced-genomic expressed protein| Length = 4613 Score = 31.3 bits (62), Expect = 9.0 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -1 / +1 Query: 436 FDQSRAPSSSSGRAVAGFQRSSPAIGDFWVSSDGGNGIPAS 314 FD S A SSS AG SSPA+ S+ +G AS Sbjct: 1945 FDPSMASSSSMAATTAGVPGSSPAMAPLLTSARMSSGSSAS 2067
>LOC_Os04g21030:12004.t01837:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1939 Score = 29.9 bits (59), Expect(2) = 9.3 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +3 / +1 Query: 327 PFPPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLISGP 452 P P Q + R P++ + G RDW+NL GP Sbjct: 118 PTPAGGNEQAVAVVVPRRSLPSSINHNSKTGTRDWTNLGDGP 243 Score = 22.1 bits (42), Expect(2) = 9.3 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = +3 / +2 Query: 645 RCWRSRDR 668 RCWRSR R Sbjct: 524 RCWRSRRR 547
>LOC_Os02g58700:12002.t05440:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2860 Score = 30.4 bits (60), Expect(2) = 9.7 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 / +1 Query: 285 GPFDLQEDQ*LAGIPFPPSEETQKSPIAGDDRWNPATARPEEEE 416 GP E Q A P S+ ++ + DD+ + AT RPE+ E Sbjct: 979 GPRIRSETQPSAFDPIGQSDSRKRKLVISDDKADDATRRPEDRE 1110 Score = 22.1 bits (42), Expect(2) = 9.7 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +2 / +1 Query: 506 HAFCEARLHIWRRASSRLPPNLGTEDSSRVR*ELFNSA 619 H C+ +L SRLP NLG + R L N A Sbjct: 1879 HPHCKCKLFGA*SQPSRLPFNLGAN*TVLQRIHLRNEA 1992 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 326,370,840 Number of extensions: 5259854 Number of successful extensions: 21907 Number of sequences better than 10.0: 34 Length of query: 275 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 226 Effective length of database: 52,856,264 Effective search space: 11945515664 Effective search space used: 11945515664 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)