ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O08784:TCOF_MOUSE Treacle protein - Mus musculus (Mouse) 34 0.61
2Q99Z29:GPMA_STRP1 2,3-bisphosphoglycerate-dependent phosphoglyce... 32 2.3
3P50471:GSTX1_NICPL Probable glutathione S-transferase MSR-1 - Ni... 32 3.9
4P29292:CUTI_ASCRA Cutinase precursor - Ascochyta rabiei (Chickpe... 31 5.2
5Q697L1:TRPV1_CANFA Transient receptor potential cation channel s... 31 6.7
6Q9Y6H5:SNCAP_HUMAN Synphilin-1 - Homo sapiens (Human) 30 8.8
7P59797:SELV_HUMAN Selenoprotein V - Homo sapiens (Human) 30 8.8
8P0A3Y4:GPMA_STRR6 2,3-bisphosphoglycerate-dependent phosphoglyce... 30 8.8
9P0A3Y3:GPMA_STRPN 2,3-bisphosphoglycerate-dependent phosphoglyce... 30 8.8

>O08784:TCOF_MOUSE Treacle protein - Mus musculus (Mouse)|
          Length = 1320
 Score = 34.3 bits (77), Expect = 0.61
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
 Frame = -1

Query: 505 SILSNTRVARESLTDCQLGPLIRFDQSRA--------PSSSSGRAVAGFQRSSPAIGDFW 350
           S+  ++    E  T  Q  PL R  Q++A        P+S+SG+AVA   +  P + +  
Sbjct: 664 SLEEDSSSEEEDETPAQATPLGRLPQAKANPPPTKTPPASASGKAVAAPTKGKPPVPNST 723

Query: 349 VSSDGGNGIPAS 314
           VS+ G   +PA+
Sbjct: 724 VSARGQRSVPAA 735



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>Q99Z29:GPMA_STRP1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -|
           Streptococcus pyogenes serotype M1
          Length = 231

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 512 FCEARLHIWRRASSRLPPNLGTED 583
           FC+ ++HIWRR+   LPP +  +D
Sbjct: 105 FCDEQVHIWRRSYDVLPPAMAKDD 128



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>P50471:GSTX1_NICPL Probable glutathione S-transferase MSR-1 - Nicotiana|
           plumbaginifolia (Leadwort-leaved tobacco)
          Length = 219

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 VKFEASRINLAPFSPLVEPPSP-HQAIPSLIHDWDPL 209
           +K+EA   NL+  SPL+   +P H+ IP LIH+  P+
Sbjct: 29  IKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPI 65



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>P29292:CUTI_ASCRA Cutinase precursor - Ascochyta rabiei (Chickpea ascochyta blight|
           fungus) (Didymella rabiei)
          Length = 223

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 478 RESLTDCQLGPLIRFDQSRAPSSSSGRAVAGFQRSSPAIGDFWVSS 341
           R +L   QL P+IR +  +  SSS  +A+  F R S  IG+  VS+
Sbjct: 22  RTTLEVRQLDPIIRSELEQGSSSSCPKAILIFARGSTEIGNMGVSA 67



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>Q697L1:TRPV1_CANFA Transient receptor potential cation channel subfamily V member 1 -|
           Canis familiaris (Dog)
          Length = 840

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 20/79 (25%), Positives = 29/79 (36%)
 Frame = +3

Query: 333 PPSEETQKSPIAGDDRWNPATARPEEEEGARDWSNLISGPN*QSVSDSRATRVLDKMDTP 512
           PP E++   P+ GD    P  A+P     A+  S                 R+  K D+ 
Sbjct: 15  PPQEDSCLDPLDGDPNSRPVPAKPHIFPTAKSRS-----------------RLFGKCDSE 57

Query: 513 SVKPDCTFGEEHPHDCPRI 569
               DC++ E     CP I
Sbjct: 58  EASMDCSYEEGQLASCPAI 76



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>Q9Y6H5:SNCAP_HUMAN Synphilin-1 - Homo sapiens (Human)|
          Length = 919

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 69  ISGQSSAAASLVKFEASRINLAPFSPLVEPPSPH-QAIPSLIHDWDPL*VE 218
           I+G S  A S    E+S  N+APF  L    SPH +   ++IHD   L  E
Sbjct: 184 INGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQHKLSTE 234



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>P59797:SELV_HUMAN Selenoprotein V - Homo sapiens (Human)|
          Length = 346

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
 Frame = +3

Query: 129 LAPFSPLVEPPSPHQAIPSLIHDWDPL*VES-ALLPQ-----*PFASALATGDPLRLRGP 290
           LAP  PL  PP P   +P L+ + DP    S  L+P       P    L T  PL    P
Sbjct: 145 LAPALPLDPPPEPAPELP-LLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRTPLAANSP 203

Query: 291 -----FDLQEDQ*LAGIPFPPSEETQKSPIAG 371
                F  + D    G+  PP      SPI G
Sbjct: 204 GPTLDFTFRADPSAIGLADPPIPSPVPSPILG 235



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>P0A3Y4:GPMA_STRR6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -|
           Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
          Length = 230

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 512 FCEARLHIWRRASSRLPPNLGTED 583
           F + ++HIWRR+   LPPN+  +D
Sbjct: 105 FGDEQVHIWRRSYDVLPPNMDRDD 128



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>P0A3Y3:GPMA_STRPN 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -|
           Streptococcus pneumoniae
          Length = 230

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 512 FCEARLHIWRRASSRLPPNLGTED 583
           F + ++HIWRR+   LPPN+  +D
Sbjct: 105 FGDEQVHIWRRSYDVLPPNMDRDD 128


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 148,963,167
Number of extensions: 3327348
Number of successful extensions: 7224
Number of sequences better than 10.0: 9
Number of HSP's gapped: 7220
Number of HSP's successfully gapped: 9
Length of query: 275
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 163
Effective length of database: 69,965,399
Effective search space: 11404360037
Effective search space used: 11404360037
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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