ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf98n05 |
|---|---|
| Clone Library Name | barley_pub |
>Q9FHW7:SKP1B_ARATH SKP1-like protein 1B - Arabidopsis thaliana (Mouse-ear cress)| Length = 171 Score = 129 bits (325), Expect(2) = 2e-41 Identities = 69/119 (57%), Positives = 75/119 (63%), Gaps = 14/119 (11%) Frame = +3 Query: 132 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 311 + ITLKSSDG SQTI+HMIEDDC DNGIPLPNV SKILSKVIEYC +HV Sbjct: 5 RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64 Query: 312 Q--------------XXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 + EDLK WD+EF+KVDQ TLFDLILAANYLNIKG Sbjct: 65 EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKG 123 Score = 60.5 bits (145), Expect(2) = 2e-41 Identities = 28/37 (75%), Positives = 28/37 (75%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFTP NQWAFE Sbjct: 135 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>Q39255:SKP1A_ARATH SKP1-like protein 1A - Arabidopsis thaliana (Mouse-ear cress)| Length = 160 Score = 124 bits (311), Expect(2) = 4e-39 Identities = 63/108 (58%), Positives = 73/108 (67%), Gaps = 4/108 (3%) Frame = +3 Query: 132 KMITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 311 K I LKSSDG SQTI HM+EDDC DNG+PLPNV SKIL+KVIEYC +HV Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV 63 Query: 312 Q----XXXXXXXXXXXXEDLKNWDAEFVKVDQATLFDLILAANYLNIK 443 + +DLK WDA+F+K+DQATLF+LILAANYLNIK Sbjct: 64 EAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIK 111 Score = 58.2 bits (139), Expect(2) = 4e-39 Identities = 27/37 (72%), Positives = 27/37 (72%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIR TFNIKNDFTP NQWAFE Sbjct: 124 MIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>Q71U00:SKP1_XENLA S-phase kinase-associated protein 1A - Xenopus laevis (African| clawed frog) Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q6PEC4:SKP1_RAT S-phase kinase-associated protein 1A - Rattus norvegicus (Rat)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q5R512:SKP1_PONPY S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q9WTX5:SKP1_MOUSE S-phase kinase-associated protein 1A - Mus musculus (Mouse)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q4R5B9:SKP1_MACFA S-phase kinase-associated protein 1A - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P63208:SKP1_HUMAN S-phase kinase-associated protein 1A - Homo sapiens (Human)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q5ZKF5:SKP1_CHICK S-phase kinase-associated protein 1A - Gallus gallus (Chicken)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P63209:SKP1_CAVPO S-phase kinase-associated protein 1A - Cavia porcellus (Guinea pig)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>Q3ZCF3:SKP1_BOVIN S-phase kinase-associated protein 1A - Bos taurus (Bovine)| Length = 163 Score = 83.6 bits (205), Expect(2) = 3e-25 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 8/111 (7%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIED-----DCADNGIPLPNVNSKILSKVIEYCN 302 I L+SSDG S TI+ M+ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 303 KHVQXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIKG 446 H +D+ WD EF+KVDQ TLF+LILAANYL+IKG Sbjct: 64 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG 114 Score = 52.4 bits (124), Expect(2) = 3e-25 Identities = 25/37 (67%), Positives = 25/37 (67%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 610 MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 126 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>P52285:FP21_DICDI Glycoprotein FP21 precursor - Dictyostelium discoideum (Slime mold)| Length = 162 Score = 78.2 bits (191), Expect(2) = 6e-23 Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 4/107 (3%) Frame = +3 Query: 135 MITLKSSDGXXXXXXXXXXXXSQTIRHMIED-DCADNGIPLPNVNSKILSKVIEYCNKHV 311 ++ L+SSD S TI++MIED +D+ IPLPNV S IL KV++YC H Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHH 62 Query: 312 QXXXXXXXXXXXX---EDLKNWDAEFVKVDQATLFDLILAANYLNIK 443 Q +D+ +D +F KVDQ TLF+LILAANYL+IK Sbjct: 63 QHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIK 109 Score = 50.1 bits (118), Expect(2) = 6e-23 Identities = 22/34 (64%), Positives = 24/34 (70%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 601 MI+GKTPEEIRK FNIKNDFTP N+W Sbjct: 122 MIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
>Q9Y709:SKP1_SCHPO Suppressor of kinetochore protein 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 161 Score = 65.9 bits (159), Expect(2) = 6e-19 Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Frame = +3 Query: 138 ITLKSSDGXXXXXXXXXXXXSQTIRHMIEDDCADN-GIPLPNVNSKILSKVIEYCNKHVQ 314 I L SSD S I++M+ED N IPLPNV+S +L KV+E+C H Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKN 63 Query: 315 XXXXXXXXXXXXE-----DLKNWDAEFVKVDQATLFDLILAANYLNIK 443 D+ WD +F+ VDQ LF+++LA+NYL+IK Sbjct: 64 DLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIK 111 Score = 48.9 bits (115), Expect(2) = 6e-19 Identities = 21/35 (60%), Positives = 25/35 (71%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 604 MI+GK+PE+IRKTFNI NDFTP N+WA Sbjct: 124 MIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158
>P52286:SKP1_YEAST Suppressor of kinetochore protein 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 194 Score = 60.8 bits (146), Expect(2) = 5e-17 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Frame = +3 Query: 222 EDDCADNGI--PLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXED--LKNWDAEFVKV 389 +DD D+ I P+PNV S +L KVIE+ H + + +WD EF+KV Sbjct: 67 DDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV 126 Query: 390 DQATLFDLILAANYLNIK 443 DQ L+++ILAANYLNIK Sbjct: 127 DQEMLYEIILAANYLNIK 144 Score = 47.4 bits (111), Expect(2) = 5e-17 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = +2 Query: 500 MIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 604 MI+G++PEEIR+TFNI NDFTP N+WA Sbjct: 157 MIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 107,079,398 Number of extensions: 1794745 Number of successful extensions: 3514 Number of sequences better than 10.0: 14 Number of HSP's gapped: 3490 Number of HSP's successfully gapped: 28 Length of query: 294 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 182 Effective length of database: 69,965,399 Effective search space: 12733702618 Effective search space used: 12733702618 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
