Clone Name | FLbaf96j12 |
---|---|
Clone Library Name | barley_pub |
>emb|CT830419.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA047F09, full insert sequence Length = 926 Score = 609 bits (307), Expect = e-171 Identities = 505/571 (88%) Strand = Plus / Plus Query: 160 ctccgctcccgcttcacccggctttacgcgctgtccagcaacgacatcaaggtggggttc 219 |||||||| || |||||||| | || |||||||||||||||||||||| |||||| | | Sbjct: 153 ctccgctctcgtctcacccgggtgtatgcgctgtccagcaacgacatcagggtgggctcc 212 Query: 220 aacctggaggtggacggcgcgccgtggaagattcttgagtttctccatgtcaaacctgga 279 ||||| ||||| ||||| || || |||||| || |||| |||||||||||||| |||||| Sbjct: 213 aacctcgaggtcgacggagctccctggaaggttattgaatttctccatgtcaagcctgga 272 Query: 280 aaaggtgccgcttttgtgaggacaaaaatgcgcaattatatcaccggcaacacagttgag 339 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 273 aaaggtgctgcttttgtaaggacaaaaatgcgtaattatatcactggcaacacagttgac 332 Query: 340 aaaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaa 399 |||||||||||||||||||||||||||| || || || |||||||||||||| || ||| Sbjct: 333 aaaacctttcgagctggaagtacgatcccagaggcatccatttcaaaggaaactaagcaa 392 Query: 400 ttcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagc 459 || |||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct: 393 tttacctacaaggatggagcccagtttgtgttcatggatctgactacctttgaagaaagt 452 Query: 460 cgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgc 519 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 453 cgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaagaaggaatggactgc 512 Query: 520 actttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctg 579 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 513 aatttgttatactggaatggacggatcattgattttgatctccccatcaccgttaggctg 572 Query: 580 accgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgca 639 || ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct: 573 actgtaactgatactgacccagggcaaggtgacagtgcacaaggaggaacaaaaccagca 632 Query: 640 actctggaaacaggagctgttgtcaatgtgccgtctttcgttgatgtaggcgacgatgtc 699 || ||||||||||||||||||||| ||||| || || || | |||||||| ||| || Sbjct: 633 accgtggaaacaggagctgttgtcacagtgccctcgtttgtgaacgtaggcgatgatatc 692 Query: 700 ctaattgactcgagaaccgggcagtatatga 730 || ||||| || ||||| || |||||||||| Sbjct: 693 ctgattgattcaagaactggccagtatatga 723
>ref|NM_001072523.1| Oryza sativa (japonica cultivar-group) Os12g0115900 (Os12g0115900) mRNA, complete cds Length = 920 Score = 609 bits (307), Expect = e-171 Identities = 505/571 (88%) Strand = Plus / Plus Query: 160 ctccgctcccgcttcacccggctttacgcgctgtccagcaacgacatcaaggtggggttc 219 |||||||| || |||||||| | |||||||| ||||||||||| |||| |||||| | | Sbjct: 147 ctccgctctcgtctcacccgggtgtacgcgctttccagcaacgatatcagggtgggctcc 206 Query: 220 aacctggaggtggacggcgcgccgtggaagattcttgagtttctccatgtcaaacctgga 279 ||||| ||||| ||||| || || |||||| ||||||| |||||||||||||| |||||| Sbjct: 207 aacctcgaggtcgacggagctccctggaaggttcttgaatttctccatgtcaagcctgga 266 Query: 280 aaaggtgccgcttttgtgaggacaaaaatgcgcaattatatcaccggcaacacagttgag 339 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 267 aaaggtgctgcttttgtaaggacaaaaatgcgtaattatatcactggcaacacagttgac 326 Query: 340 aaaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaa 399 |||||||||||||||||||||||||||| || || || |||||||||||||| || ||| Sbjct: 327 aaaacctttcgagctggaagtacgatcccagaggcatccatttcaaaggaaactaagcaa 386 Query: 400 ttcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagc 459 || |||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct: 387 tttacctacaaggatggagcccagtttgtgttcatggatctgactacctttgaagaaagt 446 Query: 460 cgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgc 519 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 447 cgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaagaaggaatggactgc 506 Query: 520 actttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctg 579 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 507 aatttgttatactggaatggacggatcattgattttgatctccccatcaccgttaggctg 566 Query: 580 accgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgca 639 || ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct: 567 actgtaactgatactgacccagggcaaggtgacagtgcacaaggaggaacaaaaccagca 626 Query: 640 actctggaaacaggagctgttgtcaatgtgccgtctttcgttgatgtaggcgacgatgtc 699 || ||||||||||||||||||||| ||||| || || || | |||||||| ||| || Sbjct: 627 accgtggaaacaggagctgttgtcacagtgccctcgtttgtgaacgtaggcgatgatatc 686 Query: 700 ctaattgactcgagaaccgggcagtatatga 730 || ||||| || ||||| || |||||||||| Sbjct: 687 ctgattgattcaagaactggccagtatatga 717
>ref|NM_001072120.1| Oryza sativa (japonica cultivar-group) Os11g0116400 (Os11g0116400) mRNA, complete cds Length = 946 Score = 609 bits (307), Expect = e-171 Identities = 505/571 (88%) Strand = Plus / Plus Query: 160 ctccgctcccgcttcacccggctttacgcgctgtccagcaacgacatcaaggtggggttc 219 |||||||| || |||||||| | || |||||||||||||||||||||| |||||| | | Sbjct: 155 ctccgctctcgtctcacccgggtgtatgcgctgtccagcaacgacatcagggtgggctcc 214 Query: 220 aacctggaggtggacggcgcgccgtggaagattcttgagtttctccatgtcaaacctgga 279 ||||| ||||| ||||| || || |||||| || |||| |||||||||||||| |||||| Sbjct: 215 aacctcgaggtcgacggagctccctggaaggttattgaatttctccatgtcaagcctgga 274 Query: 280 aaaggtgccgcttttgtgaggacaaaaatgcgcaattatatcaccggcaacacagttgag 339 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 275 aaaggtgctgcttttgtaaggacaaaaatgcgtaattatatcactggcaacacagttgac 334 Query: 340 aaaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaa 399 |||||||||||||||||||||||||||| || || || |||||||||||||| || ||| Sbjct: 335 aaaacctttcgagctggaagtacgatcccagaggcatccatttcaaaggaaactaagcaa 394 Query: 400 ttcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagc 459 || |||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct: 395 tttacctacaaggatggagcccagtttgtgttcatggatctgactacctttgaagaaagt 454 Query: 460 cgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgc 519 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 455 cgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaagaaggaatggactgc 514 Query: 520 actttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctg 579 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 515 aatttgttatactggaatggacggatcattgattttgatctccccatcaccgttaggctg 574 Query: 580 accgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgca 639 || ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct: 575 actgtaactgatactgacccagggcaaggtgacagtgcacaaggaggaacaaaaccagca 634 Query: 640 actctggaaacaggagctgttgtcaatgtgccgtctttcgttgatgtaggcgacgatgtc 699 || ||||||||||||||||||||| ||||| || || || | |||||||| ||| || Sbjct: 635 accgtggaaacaggagctgttgtcacagtgccctcgtttgtgaacgtaggcgatgatatc 694 Query: 700 ctaattgactcgagaaccgggcagtatatga 730 || ||||| || ||||| || |||||||||| Sbjct: 695 ctgattgattcaagaactggccagtatatga 725
>dbj|AK059833.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B05, full insert sequence Length = 946 Score = 609 bits (307), Expect = e-171 Identities = 505/571 (88%) Strand = Plus / Plus Query: 160 ctccgctcccgcttcacccggctttacgcgctgtccagcaacgacatcaaggtggggttc 219 |||||||| || |||||||| | || |||||||||||||||||||||| |||||| | | Sbjct: 155 ctccgctctcgtctcacccgggtgtatgcgctgtccagcaacgacatcagggtgggctcc 214 Query: 220 aacctggaggtggacggcgcgccgtggaagattcttgagtttctccatgtcaaacctgga 279 ||||| ||||| ||||| || || |||||| || |||| |||||||||||||| |||||| Sbjct: 215 aacctcgaggtcgacggagctccctggaaggttattgaatttctccatgtcaagcctgga 274 Query: 280 aaaggtgccgcttttgtgaggacaaaaatgcgcaattatatcaccggcaacacagttgag 339 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 275 aaaggtgctgcttttgtaaggacaaaaatgcgtaattatatcactggcaacacagttgac 334 Query: 340 aaaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaa 399 |||||||||||||||||||||||||||| || || || |||||||||||||| || ||| Sbjct: 335 aaaacctttcgagctggaagtacgatcccagaggcatccatttcaaaggaaactaagcaa 394 Query: 400 ttcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagc 459 || |||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct: 395 tttacctacaaggatggagcccagtttgtgttcatggatctgactacctttgaagaaagt 454 Query: 460 cgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgc 519 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 455 cgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaagaaggaatggactgc 514 Query: 520 actttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctg 579 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 515 aatttgttatactggaatggacggatcattgattttgatctccccatcaccgttaggctg 574 Query: 580 accgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgca 639 || ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct: 575 actgtaactgatactgacccagggcaaggtgacagtgcacaaggaggaacaaaaccagca 634 Query: 640 actctggaaacaggagctgttgtcaatgtgccgtctttcgttgatgtaggcgacgatgtc 699 || ||||||||||||||||||||| ||||| || || || | |||||||| ||| || Sbjct: 635 accgtggaaacaggagctgttgtcacagtgccctcgtttgtgaacgtaggcgatgatatc 694 Query: 700 ctaattgactcgagaaccgggcagtatatga 730 || ||||| || ||||| || |||||||||| Sbjct: 695 ctgattgattcaagaactggccagtatatga 725
>dbj|AK058318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A09, full insert sequence Length = 920 Score = 609 bits (307), Expect = e-171 Identities = 505/571 (88%) Strand = Plus / Plus Query: 160 ctccgctcccgcttcacccggctttacgcgctgtccagcaacgacatcaaggtggggttc 219 |||||||| || |||||||| | |||||||| ||||||||||| |||| |||||| | | Sbjct: 147 ctccgctctcgtctcacccgggtgtacgcgctttccagcaacgatatcagggtgggctcc 206 Query: 220 aacctggaggtggacggcgcgccgtggaagattcttgagtttctccatgtcaaacctgga 279 ||||| ||||| ||||| || || |||||| ||||||| |||||||||||||| |||||| Sbjct: 207 aacctcgaggtcgacggagctccctggaaggttcttgaatttctccatgtcaagcctgga 266 Query: 280 aaaggtgccgcttttgtgaggacaaaaatgcgcaattatatcaccggcaacacagttgag 339 |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 267 aaaggtgctgcttttgtaaggacaaaaatgcgtaattatatcactggcaacacagttgac 326 Query: 340 aaaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaa 399 |||||||||||||||||||||||||||| || || || |||||||||||||| || ||| Sbjct: 327 aaaacctttcgagctggaagtacgatcccagaggcatccatttcaaaggaaactaagcaa 386 Query: 400 ttcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagc 459 || |||||||||||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct: 387 tttacctacaaggatggagcccagtttgtgttcatggatctgactacctttgaagaaagt 446 Query: 460 cgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgc 519 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 447 cgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaagaaggaatggactgc 506 Query: 520 actttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctg 579 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 507 aatttgttatactggaatggacggatcattgattttgatctccccatcaccgttaggctg 566 Query: 580 accgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgca 639 || ||||| || ||||| || |||||||||||||||||||||||||||||||| || ||| Sbjct: 567 actgtaactgatactgacccagggcaaggtgacagtgcacaaggaggaacaaaaccagca 626 Query: 640 actctggaaacaggagctgttgtcaatgtgccgtctttcgttgatgtaggcgacgatgtc 699 || ||||||||||||||||||||| ||||| || || || | |||||||| ||| || Sbjct: 627 accgtggaaacaggagctgttgtcacagtgccctcgtttgtgaacgtaggcgatgatatc 686 Query: 700 ctaattgactcgagaaccgggcagtatatga 730 || ||||| || ||||| || |||||||||| Sbjct: 687 ctgattgattcaagaactggccagtatatga 717
>gb|AY110922.1| Zea mays CL24029_1 mRNA sequence Length = 652 Score = 202 bits (102), Expect = 2e-48 Identities = 277/337 (82%) Strand = Plus / Minus Query: 341 aaacctttcgagctggaagtacgatccaggaagcttctatttcaaaggaaaccaaacaat 400 ||||||| || |||||||||||| | |||||| | || |||||||||| ||||| |||| Sbjct: 593 aaaccttccgtgctggaagtacgctacaggaaccatccctttcaaaggagaccaagcaat 534 Query: 401 tcacctacaaggatggctcccagtttgtgttcatggatttgacgtcctttgaagaaagcc 460 | || |||||||||||||||||||| |||||||||||| |||| | ||||||||||| | Sbjct: 533 ttacatacaaggatggctcccagttcgtgttcatggatctgacaacatttgaagaaagtc 474 Query: 461 gcttaaacgagtcggatgttggcgacaggcagaagtggttgaaagaaggaatggactgca 520 | ||||| || | ||||| || |||| | ||| ||||||| || |||||||||| Sbjct: 473 ggttaaatgaagcagatgtcggtgacaaacnnnnntggctgaaagaggggatggactgca 414 Query: 521 ctttgttatactggaatggacggatcattgattttgatcttcccatcaccgttaggctga 580 |||||| ||||||||||| |||||||||||| || || || ||||| || ||||||| Sbjct: 413 atttgttgtactggaatgggaagatcattgatttcgacctcccaatcactgtgaggctga 354 Query: 581 ccgtaaccgaaactgatcctgggcaaggtgacagtgcacaaggaggaacaaagcctgcaa 640 | ||||| || ||||| || ||| | |||| ||||| |||||||||||||||||||||| Sbjct: 353 ctgtaactgatactgacccaggggcaagtgatagtgcgcaaggaggaacaaagcctgcaa 294 Query: 641 ctctggaaacaggagctgttgtcaatgtgccgtcttt 677 | |||||||| ||||||||||||| |||||| ||||| Sbjct: 293 ccctggaaactggagctgttgtcactgtgccctcttt 257
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 161 bits (81), Expect = 5e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 259 tttctccatgtcaaacctggaaaaggtgccgcttttgtgaggacaaaaatgcgcaattat 318 |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 12692 tttctccatgtcaagcctggaaaaggtgctgcttttgtaaggacaaaaatgcgtaattat 12751 Query: 319 atcaccggcaacacagttgagaaaacctttcgagctggaagtacg 363 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 12752 atcactggcaacacagttgacaaaacctttcgagctggaagtacg 12796 Score = 155 bits (78), Expect = 3e-34 Identities = 93/98 (94%) Strand = Plus / Plus Query: 446 cctttgaagaaagccgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaag 505 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 13703 cctttgaagaaagtcgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaag 13762 Query: 506 aaggaatggactgcactttgttatactggaatggacgg 543 ||||||||||||||| |||||||||||||||||||||| Sbjct: 13763 aaggaatggactgcaatttgttatactggaatggacgg 13800 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Plus Query: 543 gatcattgattttgatcttcccatcaccgttaggctgaccgtaaccgaaactgatcctgg 602 |||||||||||||||||| |||||||||||||||||||| ||||| || ||||| || || Sbjct: 13974 gatcattgattttgatctccccatcaccgttaggctgactgtaactgatactgacccagg 14033 Query: 603 gcaaggtgacagtgcacaagg 623 ||||||||||||||||||||| Sbjct: 14034 gcaaggtgacagtgcacaagg 14054 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 379 atttcaaaggaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggat 438 |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct: 13241 atttcaaaggaaactaagcaatttacctacaaggatggagcccagtttgtgttcatggat 13300 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 14150 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 14209 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 14210 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 14259 Score = 61.9 bits (31), Expect = 4e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 187 gcgctgtccagcaacgacatcaaggtggggttcaacctggaggtggacggcgcgccgtgg 246 |||||||||||||||||||||| |||||| | |||||| ||||| ||||| || || ||| Sbjct: 11833 gcgctgtccagcaacgacatcagggtgggctccaacctcgaggtcgacggagctccctgg 11892 Query: 247 aag 249 ||| Sbjct: 11893 aag 11895
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 161 bits (81), Expect = 5e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 259 tttctccatgtcaaacctggaaaaggtgccgcttttgtgaggacaaaaatgcgcaattat 318 |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 776872 tttctccatgtcaagcctggaaaaggtgctgcttttgtaaggacaaaaatgcgtaattat 776931 Query: 319 atcaccggcaacacagttgagaaaacctttcgagctggaagtacg 363 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 776932 atcactggcaacacagttgacaaaacctttcgagctggaagtacg 776976 Score = 155 bits (78), Expect = 3e-34 Identities = 93/98 (94%) Strand = Plus / Plus Query: 446 cctttgaagaaagccgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaag 505 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 777883 cctttgaagaaagtcgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaag 777942 Query: 506 aaggaatggactgcactttgttatactggaatggacgg 543 ||||||||||||||| |||||||||||||||||||||| Sbjct: 777943 aaggaatggactgcaatttgttatactggaatggacgg 777980 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Plus Query: 543 gatcattgattttgatcttcccatcaccgttaggctgaccgtaaccgaaactgatcctgg 602 |||||||||||||||||| |||||||||||||||||||| ||||| || ||||| || || Sbjct: 778154 gatcattgattttgatctccccatcaccgttaggctgactgtaactgatactgacccagg 778213 Query: 603 gcaaggtgacagtgcacaagg 623 ||||||||||||||||||||| Sbjct: 778214 gcaaggtgacagtgcacaagg 778234 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 379 atttcaaaggaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggat 438 |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct: 777421 atttcaaaggaaactaagcaatttacctacaaggatggagcccagtttgtgttcatggat 777480 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 778329 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 778388 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 778389 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 778438 Score = 58.0 bits (29), Expect = 6e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 184 tacgcgctgtccagcaacgacatcaaggtggggttcaacctggaggtggacggcgcgccg 243 |||||||| ||||||||||| |||| |||||| | |||||| ||||| ||||| || || Sbjct: 775876 tacgcgctttccagcaacgatatcagggtgggctccaacctcgaggtcgacggagctccc 775935 Query: 244 tggaagattcttg 256 |||||| |||||| Sbjct: 775936 tggaaggttcttg 775948
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 161 bits (81), Expect = 5e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 259 tttctccatgtcaaacctggaaaaggtgccgcttttgtgaggacaaaaatgcgcaattat 318 |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 734400 tttctccatgtcaagcctggaaaaggtgctgcttttgtaaggacaaaaatgcgtaattat 734459 Query: 319 atcaccggcaacacagttgagaaaacctttcgagctggaagtacg 363 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 734460 atcactggcaacacagttgacaaaacctttcgagctggaagtacg 734504 Score = 155 bits (78), Expect = 3e-34 Identities = 93/98 (94%) Strand = Plus / Plus Query: 446 cctttgaagaaagccgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaag 505 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 735411 cctttgaagaaagtcgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaag 735470 Query: 506 aaggaatggactgcactttgttatactggaatggacgg 543 ||||||||||||||| |||||||||||||||||||||| Sbjct: 735471 aaggaatggactgcaatttgttatactggaatggacgg 735508 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Plus Query: 543 gatcattgattttgatcttcccatcaccgttaggctgaccgtaaccgaaactgatcctgg 602 |||||||||||||||||| |||||||||||||||||||| ||||| || ||||| || || Sbjct: 735682 gatcattgattttgatctccccatcaccgttaggctgactgtaactgatactgacccagg 735741 Query: 603 gcaaggtgacagtgcacaagg 623 ||||||||||||||||||||| Sbjct: 735742 gcaaggtgacagtgcacaagg 735762 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 379 atttcaaaggaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggat 438 |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct: 734949 atttcaaaggaaactaagcaatttacctacaaggatggagcccagtttgtgttcatggat 735008 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 735858 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 735917 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 735918 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 735967 Score = 61.9 bits (31), Expect = 4e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 187 gcgctgtccagcaacgacatcaaggtggggttcaacctggaggtggacggcgcgccgtgg 246 |||||||||||||||||||||| |||||| | |||||| ||||| ||||| || || ||| Sbjct: 733541 gcgctgtccagcaacgacatcagggtgggctccaacctcgaggtcgacggagctccctgg 733600 Query: 247 aag 249 ||| Sbjct: 733601 aag 733603
>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 118211 Score = 161 bits (81), Expect = 5e-36 Identities = 99/105 (94%) Strand = Plus / Minus Query: 259 tttctccatgtcaaacctggaaaaggtgccgcttttgtgaggacaaaaatgcgcaattat 318 |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 2262 tttctccatgtcaagcctggaaaaggtgctgcttttgtaaggacaaaaatgcgtaattat 2203 Query: 319 atcaccggcaacacagttgagaaaacctttcgagctggaagtacg 363 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 2202 atcactggcaacacagttgacaaaacctttcgagctggaagtacg 2158 Score = 155 bits (78), Expect = 3e-34 Identities = 93/98 (94%) Strand = Plus / Minus Query: 446 cctttgaagaaagccgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaag 505 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 1251 cctttgaagaaagtcgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaag 1192 Query: 506 aaggaatggactgcactttgttatactggaatggacgg 543 ||||||||||||||| |||||||||||||||||||||| Sbjct: 1191 aaggaatggactgcaatttgttatactggaatggacgg 1154 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 543 gatcattgattttgatcttcccatcaccgttaggctgaccgtaaccgaaactgatcctgg 602 |||||||||||||||||| |||||||||||||||||||| ||||| || ||||| || || Sbjct: 980 gatcattgattttgatctccccatcaccgttaggctgactgtaactgatactgacccagg 921 Query: 603 gcaaggtgacagtgcacaagg 623 ||||||||||||||||||||| Sbjct: 920 gcaaggtgacagtgcacaagg 900 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 379 atttcaaaggaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggat 438 |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct: 1713 atttcaaaggaaactaagcaatttacctacaaggatggagcccagtttgtgttcatggat 1654 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 805 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 746 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 745 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 696 Score = 58.0 bits (29), Expect = 6e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 184 tacgcgctgtccagcaacgacatcaaggtggggttcaacctggaggtggacggcgcgccg 243 |||||||| ||||||||||| |||| |||||| | |||||| ||||| ||||| || || Sbjct: 3258 tacgcgctttccagcaacgatatcagggtgggctccaacctcgaggtcgacggagctccc 3199 Query: 244 tggaagattcttg 256 |||||| |||||| Sbjct: 3198 tggaaggttcttg 3186
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 161 bits (81), Expect = 5e-36 Identities = 99/105 (94%) Strand = Plus / Minus Query: 259 tttctccatgtcaaacctggaaaaggtgccgcttttgtgaggacaaaaatgcgcaattat 318 |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct: 8572 tttctccatgtcaagcctggaaaaggtgctgcttttgtaaggacaaaaatgcgtaattat 8513 Query: 319 atcaccggcaacacagttgagaaaacctttcgagctggaagtacg 363 ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 8512 atcactggcaacacagttgacaaaacctttcgagctggaagtacg 8468 Score = 155 bits (78), Expect = 3e-34 Identities = 93/98 (94%) Strand = Plus / Minus Query: 446 cctttgaagaaagccgcttaaacgagtcggatgttggcgacaggcagaagtggttgaaag 505 ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 7561 cctttgaagaaagtcgcttaaatgagtcagatgttggcgacaggcagaaatggttgaaag 7502 Query: 506 aaggaatggactgcactttgttatactggaatggacgg 543 ||||||||||||||| |||||||||||||||||||||| Sbjct: 7501 aaggaatggactgcaatttgttatactggaatggacgg 7464 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 543 gatcattgattttgatcttcccatcaccgttaggctgaccgtaaccgaaactgatcctgg 602 |||||||||||||||||| |||||||||||||||||||| ||||| || ||||| || || Sbjct: 7290 gatcattgattttgatctccccatcaccgttaggctgactgtaactgatactgacccagg 7231 Query: 603 gcaaggtgacagtgcacaagg 623 ||||||||||||||||||||| Sbjct: 7230 gcaaggtgacagtgcacaagg 7210 Score = 79.8 bits (40), Expect = 2e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 379 atttcaaaggaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggat 438 |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct: 8023 atttcaaaggaaactaagcaatttacctacaaggatggagcccagtttgtgttcatggat 7964 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 7114 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 7055 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 7054 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 7005 Score = 61.9 bits (31), Expect = 4e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 187 gcgctgtccagcaacgacatcaaggtggggttcaacctggaggtggacggcgcgccgtgg 246 |||||||||||||||||||||| |||||| | |||||| ||||| ||||| || || ||| Sbjct: 9431 gcgctgtccagcaacgacatcagggtgggctccaacctcgaggtcgacggagctccctgg 9372 Query: 247 aag 249 ||| Sbjct: 9371 aag 9369
>ref|NM_111708.2| Arabidopsis thaliana translation elongation factor (AT3G08740) mRNA, complete cds Length = 940 Score = 71.9 bits (36), Expect = 4e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttgac 443 ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 437 gaaaccaaacaattcacatacaaagatgggtctcagtttgttttcatggatttgac 492 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 251 ttcttgagtttctccatgtcaaacctggaaaaggtgccgcttttgtgag 299 ||||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 300 ttcttgagtttcttcatgttaaaccaggaaaaggtgcggcatttgtgag 348 Score = 44.1 bits (22), Expect = 0.88 Identities = 28/30 (93%) Strand = Plus / Plus Query: 496 tggttgaaagaaggaatggactgcactttg 525 |||||||||||||||||||| |||| |||| Sbjct: 545 tggttgaaagaaggaatggattgcattttg 574
>gb|AY117274.1| Arabidopsis thaliana putative elongation factor P (EF-P) (At3g08740) mRNA, complete cds Length = 742 Score = 71.9 bits (36), Expect = 4e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttgac 443 ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 355 gaaaccaaacaattcacatacaaagatgggtctcagtttgttttcatggatttgac 410 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 251 ttcttgagtttctccatgtcaaacctggaaaaggtgccgcttttgtgag 299 ||||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 218 ttcttgagtttcttcatgttaaaccaggaaaaggtgcggcatttgtgag 266 Score = 44.1 bits (22), Expect = 0.88 Identities = 28/30 (93%) Strand = Plus / Plus Query: 496 tggttgaaagaaggaatggactgcactttg 525 |||||||||||||||||||| |||| |||| Sbjct: 463 tggttgaaagaaggaatggattgcattttg 492
>gb|AY063783.1| Arabidopsis thaliana putative elongation factor P (EF-P) (At3g08740) mRNA, complete cds Length = 908 Score = 71.9 bits (36), Expect = 4e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttgac 443 ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 388 gaaaccaaacaattcacatacaaagatgggtctcagtttgttttcatggatttgac 443 Score = 58.0 bits (29), Expect = 6e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 251 ttcttgagtttctccatgtcaaacctggaaaaggtgccgcttttgtgag 299 ||||||||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 251 ttcttgagtttcttcatgttaaaccaggaaaaggtgcggcatttgtgag 299 Score = 44.1 bits (22), Expect = 0.88 Identities = 28/30 (93%) Strand = Plus / Plus Query: 496 tggttgaaagaaggaatggactgcactttg 525 |||||||||||||||||||| |||| |||| Sbjct: 496 tggttgaaagaaggaatggattgcattttg 525
>gb|AY086204.1| Arabidopsis thaliana clone 2242 mRNA, complete sequence Length = 939 Score = 71.9 bits (36), Expect = 4e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttgac 443 ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 437 gaaaccaaacaattcacatacaaagatgggtctcagtttgttttcatggatttgac 492 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 251 ttcttgagtttctccatgtcaaacctggaaaaggtgccgcttttgtgaggac 302 ||||||||||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct: 300 ttcttgagtttcttcatgttaaaccaggaaaaggtgcggcatttgtgaggac 351 Score = 44.1 bits (22), Expect = 0.88 Identities = 28/30 (93%) Strand = Plus / Plus Query: 496 tggttgaaagaaggaatggactgcactttg 525 |||||||||||||||||||| |||| |||| Sbjct: 545 tggttgaaagaaggaatggattgcattttg 574
>gb|AC146784.30| Medicago truncatula clone mth2-172c4, complete sequence Length = 114858 Score = 69.9 bits (35), Expect = 2e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 256 gagtttctccatgtcaaacctggaaaaggtgccgcttttgtgaggac 302 |||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 6090 gagtttcttcatgtgaaacctggaaaaggtgccgcatttgtgaggac 6136 Score = 42.1 bits (21), Expect = 3.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 493 aagtggttgaaagaaggaatggactgcactttg 525 |||||| ||||||| ||||||||||||| |||| Sbjct: 8571 aagtggctgaaagagggaatggactgcaatttg 8603
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence, complete sequence Length = 90721 Score = 67.9 bits (34), Expect = 6e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttg 441 ||||||||||||||||| ||||| ||||| || |||||||| |||||||||||| Sbjct: 66371 gaaaccaaacaattcacatacaaagatgggtctcagtttgttttcatggatttg 66318 Score = 48.1 bits (24), Expect = 0.057 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 gagtttctccatgtcaaacctggaaaaggtgccgcttttgtgag 299 |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 66592 gagtttcttcatgttaaaccaggaaaaggtgcggcatttgtgag 66549 Score = 44.1 bits (22), Expect = 0.88 Identities = 28/30 (93%) Strand = Plus / Minus Query: 496 tggttgaaagaaggaatggactgcactttg 525 |||||||||||||||||||| |||| |||| Sbjct: 66148 tggttgaaagaaggaatggattgcattttg 66119
>emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 12281 Score = 67.9 bits (34), Expect = 6e-08 Identities = 91/110 (82%) Strand = Plus / Plus Query: 621 aggaggaacaaagcctgcaactctggaaacaggagctgttgtcaatgtgccgtctttcgt 680 |||||||||||| || ||||| ||||||||||||||||||||| ||||| || || || Sbjct: 101 aggaggaacaaaaccagcaaccgtggaaacaggagctgttgtcacagtgccctcgtttgt 160 Query: 681 tgatgtaggcgacgatgtcctaattgactcgagaaccgggcagtatatga 730 | |||||||| ||| |||| ||||| || ||||| || |||||||||| Sbjct: 161 gaacgtaggcgatgatatcctgattgattcaagaactggccagtatatga 210
>gb|AC189368.1| Brassica rapa subsp. pekinensis clone KBrB047A09, complete sequence Length = 142540 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 388 gaaaccaaacaattcacctacaaggatggctcccagtttgtgttcatggatttg 441 ||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||| Sbjct: 109816 gaaaccaaacagttcacatacaaagacggctctcagtttgttttcatggatttg 109763 Score = 48.1 bits (24), Expect = 0.057 Identities = 39/44 (88%) Strand = Plus / Minus Query: 256 gagtttctccatgtcaaacctggaaaaggtgccgcttttgtgag 299 |||||||| |||||||| || ||||||||||| || |||||||| Sbjct: 110029 gagtttcttcatgtcaagccaggaaaaggtgcggcctttgtgag 109986
>ref|XM_001168451.1| PREDICTED: Pan troglodytes cartilage associated protein, transcript variant 4 (CRTAP), mRNA Length = 6656 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4894 ttctatttcaaaggaaaccaaac 4916
>ref|XM_001099225.1| PREDICTED: Macaca mulatta cartilage associated protein, transcript variant 2 (CRTAP), mRNA Length = 6521 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4785 ttctatttcaaaggaaaccaaac 4807
>ref|XM_001099332.1| PREDICTED: Macaca mulatta cartilage associated protein, transcript variant 3 (CRTAP), mRNA Length = 6481 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4745 ttctatttcaaaggaaaccaaac 4767
>ref|XM_001099124.1| PREDICTED: Macaca mulatta cartilage associated protein, transcript variant 1 (CRTAP), mRNA Length = 6559 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4823 ttctatttcaaaggaaaccaaac 4845
>ref|XM_001099429.1| PREDICTED: Macaca mulatta cartilage associated protein, transcript variant 4 (CRTAP), mRNA Length = 6610 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4874 ttctatttcaaaggaaaccaaac 4896
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence Length = 169321 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 826 acaacattgtcttttcttcttct 848 ||||||||||||||||||||||| Sbjct: 162231 acaacattgtcttttcttcttct 162209
>gb|AC161187.5| Mus musculus chromosome 5, clone RP23-297H22, complete sequence Length = 171367 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 826 acaacattgtcttttcttcttct 848 ||||||||||||||||||||||| Sbjct: 24869 acaacattgtcttttcttcttct 24847
>ref|NM_006371.3| Homo sapiens cartilage associated protein (CRTAP), mRNA Length = 6622 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 4852 ttctatttcaaaggaaaccaaac 4874
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 46.1 bits (23), Expect = 0.22 Identities = 32/35 (91%) Strand = Plus / Plus Query: 622 ggaggaacaaagcctgcaactctggaaacaggagc 656 ||||||||||||||||||| ||||||||||||| Sbjct: 1320837 ggaggaacaaagcctgcaatcttggaaacaggagc 1320871
>gb|AC123900.2| Homo sapiens chromosome 3 clone RP11-640D6, complete sequence Length = 166485 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 21200 ttctatttcaaaggaaaccaaac 21222
>ref|NM_064606.3| Caenorhabditis elegans K10H10.1 (K10H10.1) mRNA, complete cds Length = 1654 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 834 gtcttttcttcttcttctcattt 856 ||||||||||||||||||||||| Sbjct: 1465 gtcttttcttcttcttctcattt 1487
>gb|AC112211.2| Homo sapiens chromosome 3 clone RP11-627J17, complete sequence Length = 182509 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 181891 ttctatttcaaaggaaaccaaac 181913
>emb|Z83236.1|CEK10H10 Caenorhabditis elegans Cosmid K10H10, complete sequence Length = 30033 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 834 gtcttttcttcttcttctcattt 856 ||||||||||||||||||||||| Sbjct: 4216 gtcttttcttcttcttctcattt 4238
>dbj|AK027235.1| Homo sapiens cDNA: FLJ23582 fis, clone LNG13759 Length = 1980 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 375 ttctatttcaaaggaaaccaaac 397 ||||||||||||||||||||||| Sbjct: 178 ttctatttcaaaggaaaccaaac 200
>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence Length = 45702 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 43 cgccacctcgccggcgccaccca 65 ||||||||||||||||||||||| Sbjct: 32335 cgccacctcgccggcgccaccca 32357
>emb|AL391840.6| Human DNA sequence from clone RP11-342L8 on chromosome 6 Contains a gene for a novel protein and a CpG island, complete sequence Length = 109737 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Plus Query: 835 tcttttcttcttcttctcattt 856 |||||||||||||||||||||| Sbjct: 14885 tcttttcttcttcttctcattt 14906
>gb|AF269362.1|AF269362 Staphylococcus epidermidis strain SR1 clone step.1002f03 genomic sequence Length = 3710 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Plus Query: 510 aatggactgcactttgttatac 531 |||||||||||||||||||||| Sbjct: 2138 aatggactgcactttgttatac 2159
>gb|AC084601.1|CBRG43I20 Caenorhabditis briggsae cosmid G43I20, complete sequence Length = 41510 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Minus Query: 837 ttttcttcttcttctcatttat 858 |||||||||||||||||||||| Sbjct: 466 ttttcttcttcttctcatttat 445
>gb|AC012155.17|AC012155 Homo sapiens 6 BAC RP11-114J19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174285 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Minus Query: 835 tcttttcttcttcttctcattt 856 |||||||||||||||||||||| Sbjct: 62741 tcttttcttcttcttctcattt 62720
>gb|AF270368.1|AF270368 Staphylococcus epidermidis strain SR1 clone step.4027f09a genomic sequence Length = 2389 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Plus Query: 510 aatggactgcactttgttatac 531 |||||||||||||||||||||| Sbjct: 60 aatggactgcactttgttatac 81
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Minus Query: 510 aatggactgcactttgttatac 531 |||||||||||||||||||||| Sbjct: 133397 aatggactgcactttgttatac 133376
>ref|NM_001008000.1| Xenopus tropicalis cpne3 protein (cpne3), mRNA gb|BC080879.1| Xenopus tropicalis cpne3 protein, mRNA (cDNA clone MGC:79464 IMAGE:5382901), complete cds Length = 1855 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Minus Query: 837 ttttcttcttcttctcatttat 858 |||||||||||||||||||||| Sbjct: 831 ttttcttcttcttctcatttat 810
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 44.1 bits (22), Expect = 0.88 Identities = 22/22 (100%) Strand = Plus / Plus Query: 510 aatggactgcactttgttatac 531 |||||||||||||||||||||| Sbjct: 2354466 aatggactgcactttgttatac 2354487
>ref|XM_421837.2| PREDICTED: Gallus gallus hypothetical LOC423978 (LOC423978), mRNA Length = 4580 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 830 cattgtcttttcttcttcttc 850 ||||||||||||||||||||| Sbjct: 1917 cattgtcttttcttcttcttc 1897
>ref|NM_001049341.1| Oryza sativa (japonica cultivar-group) Os01g0296700 (Os01g0296700) mRNA, partial cds Length = 1830 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggaggtggacggcgcgccgtggaag 249 ||||||||||||||||||| ||||| Sbjct: 1341 ggaggtggacggcgcgccgcggaag 1365
>gb|AC189510.1| Brassica rapa subsp. pekinensis clone KBrB089D07, complete sequence Length = 135640 Score = 42.1 bits (21), Expect = 3.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 809 ttaccgttgaaaagtccacaacattgtct 837 ||||||||||||| | ||||||||||||| Sbjct: 22180 ttaccgttgaaaatttcacaacattgtct 22208
>gb|AC186344.2| Gallus gallus BAC clone CH261-182C23 from chromosome z, complete sequence Length = 182319 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 gggcaaggtgacagtgcacaa 621 ||||||||||||||||||||| Sbjct: 80522 gggcaaggtgacagtgcacaa 80542
>ref|NM_119042.3| Arabidopsis thaliana CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase (CAK1AT) mRNA, complete cds Length = 1748 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 1652 tgaagagctagttttcttgtt 1672
>ref|NM_179137.2| Arabidopsis thaliana CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase (CAK1AT) mRNA, complete cds Length = 2070 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 1974 tgaagagctagttttcttgtt 1994
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence Length = 252420 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 836 cttttcttcttcttctcattt 856 ||||||||||||||||||||| Sbjct: 180419 cttttcttcttcttctcattt 180399
>gb|AC140469.2| Mus musculus BAC clone RP24-396D20 from chromosome 19, complete sequence Length = 180376 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 831 attgtcttttcttcttcttct 851 ||||||||||||||||||||| Sbjct: 121810 attgtcttttcttcttcttct 121790
>gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, complete sequence Length = 210189 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 826 acaacattgtcttttcttctt 846 ||||||||||||||||||||| Sbjct: 185325 acaacattgtcttttcttctt 185305
>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence Length = 211931 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 826 acaacattgtcttttcttctt 846 ||||||||||||||||||||| Sbjct: 202413 acaacattgtcttttcttctt 202433
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 832 ttgtcttttcttcttcttctc 852 ||||||||||||||||||||| Sbjct: 489097 ttgtcttttcttcttcttctc 489077
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 11362725 agtttgtgttcatggatttga 11362745
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 5511044 agtttgtgttcatggatttga 5511064
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 19153164 agtttgtgttcatggatttga 19153184
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggaggtggacggcgcgccgtggaag 249 ||||||||||||||||||| ||||| Sbjct: 10871849 ggaggtggacggcgcgccgcggaag 10871873
>ref|XM_647050.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (130.t00012) partial mRNA Length = 2058 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 837 ttttcttcttcttctcatttatcat 861 ||||||||||||||| ||||||||| Sbjct: 1631 ttttcttcttcttctaatttatcat 1607
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggaggtggacggcgcgccgtggaag 249 ||||||||||||||||||| ||||| Sbjct: 58865 ggaggtggacggcgcgccgcggaag 58889
>gb|AY042816.1| Arabidopsis thaliana Cdk-activating kinase CAK1At (F19B15.10) mRNA, complete cds Length = 1736 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 1643 tgaagagctagttttcttgtt 1663
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 18684 tgaagagctagttttcttgtt 18704
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 43715 tgaagagctagttttcttgtt 43735
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 2211 tgaagagctagttttcttgtt 2231
>dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0475A09 Length = 143417 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 100330 agtttgtgttcatggatttga 100350
>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0043B22 Length = 158857 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 56649 agtttgtgttcatggatttga 56669
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 agtttgtgttcatggatttga 442 ||||||||||||||||||||| Sbjct: 24129 agtttgtgttcatggatttga 24149
>dbj|AB009399.1| Arabidopsis thaliana mRNA for Cdk-activating kinase 1At, complete cds Length = 1742 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 1646 tgaagagctagttttcttgtt 1666
>dbj|AK105791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H06, full insert sequence Length = 1830 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 ggaggtggacggcgcgccgtggaag 249 ||||||||||||||||||| ||||| Sbjct: 1341 ggaggtggacggcgcgccgcggaag 1365
>emb|BX828327.1|CNS0A32W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZA10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1699 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 tgaagagctagttttcttgtt 789 ||||||||||||||||||||| Sbjct: 1652 tgaagagctagttttcttgtt 1672
>gb|AY743219.1| Petunia x hybrida decreased apical dominance protein (Dad1) gene, complete cds Length = 5238 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 tcattgattttgatcttccca 565 ||||||||||||||||||||| Sbjct: 1159 tcattgattttgatcttccca 1139
>gb|AY746977.1| Petunia x hybrida Dad1/CCD8 mRNA, complete cds Length = 1689 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 tcattgattttgatcttccca 565 ||||||||||||||||||||| Sbjct: 110 tcattgattttgatcttccca 90
>gb|AC109168.10| Mus musculus chromosome 19, clone RP23-480L24, complete sequence Length = 190309 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 831 attgtcttttcttcttcttct 851 ||||||||||||||||||||| Sbjct: 129799 attgtcttttcttcttcttct 129819 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 169,592,722 Number of extensions: 10205532 Number of successful extensions: 263341 Number of sequences better than 10.0: 72 Number of HSP's gapped: 263341 Number of HSP's successfully gapped: 110 Length of query: 927 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 904 Effective length of database: 18,503,978,556 Effective search space: 16727596614624 Effective search space used: 16727596614624 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)