ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf98l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.96
2dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.96
3gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, co... 42 3.8
4gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, co... 42 3.8
5gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, compl... 42 3.8
6gb|AC182701.2| Populus trichocarpa clone Pop1-74K8, complete seq... 42 3.8
7gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's H... 42 3.8
8emb|Z68299.1| Caenorhabditis elegans Cosmid T04B2, complete sequ... 42 3.8
9emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in ... 42 3.8
10emb|AL359539.11| Human DNA sequence from clone RP11-719E16 on ch... 42 3.8
11emb|AL109843.25|HSDJ763G1 Human DNA sequence from clone RP4-763G... 42 3.8
12emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10... 42 3.8
13gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 3.8
14gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, comp... 42 3.8
15gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromos... 42 3.8
16gb|AC154488.2| Mus musculus BAC clone RP24-119K2 from chromosome... 42 3.8
17gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, comp... 42 3.8
18emb|BX323831.7| Zebrafish DNA sequence from clone CH211-12E7 in ... 42 3.8
19gb|AC108404.8| Mus musculus chromosome 18, clone RP24-491I16, co... 42 3.8
20ref|NM_209418.1| Eremothecium gossypii ADL032Wp (ADL032W), mRNA 42 3.8
21gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, co... 42 3.8

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740
 Score = 44.1 bits (22), Expect = 0.96
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 326      tttcagaaaccatgaagctagt 347
                ||||||||||||||||||||||
Sbjct: 31067724 tttcagaaaccatgaagctagt 31067703



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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 44.1 bits (22), Expect = 0.96
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 326    tttcagaaaccatgaagctagt 347
              ||||||||||||||||||||||
Sbjct: 124703 tttcagaaaccatgaagctagt 124682



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>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence
          Length = 145019

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 325   ctttcagaaaccatgaagcta 345
             |||||||||||||||||||||
Sbjct: 15972 ctttcagaaaccatgaagcta 15992



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>gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, complete sequence
          Length = 177747

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 47   ctctccacagggcaacaagag 67
            |||||||||||||||||||||
Sbjct: 3116 ctctccacagggcaacaagag 3136



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>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence
          Length = 163547

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 412    caggctctgtctgaggtgaag 432
              |||||||||||||||||||||
Sbjct: 135457 caggctctgtctgaggtgaag 135477



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>gb|AC182701.2| Populus trichocarpa clone Pop1-74K8, complete sequence
          Length = 93140

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 818   ctctcactcatgttgagatta 838
             |||||||||||||||||||||
Sbjct: 46166 ctctcactcatgttgagatta 46146



 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 818   ctctcactcatgttgagatta 838
             |||||||||||||||||||||
Sbjct: 60399 ctctcactcatgttgagatta 60379



 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 818   ctctcactcatgttgagatta 838
             |||||||||||||||||||||
Sbjct: 64515 ctctcactcatgttgagatta 64495



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>gb|AC142129.4| Rattus norvegicus  BAC CH230-183M21 (Children's Hospital Oakland
            Research Institute Rat (BN/SsNHsd/MCW) BAC library)
            complete sequence
          Length = 215272

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 865  tacgacatttcatattatttt 885
            |||||||||||||||||||||
Sbjct: 9711 tacgacatttcatattatttt 9691



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>emb|Z68299.1| Caenorhabditis elegans Cosmid T04B2, complete sequence
          Length = 20535

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 734  atcttttacttttttgagaaa 754
            |||||||||||||||||||||
Sbjct: 2566 atcttttacttttttgagaaa 2546



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>emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in linkage group 23,
              complete sequence
          Length = 229608

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 628    ttgaacagaggaaagaatctc 648
              |||||||||||||||||||||
Sbjct: 149132 ttgaacagaggaaagaatctc 149112



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>emb|AL359539.11| Human DNA sequence from clone RP11-719E16 on chromosome 6 Contains the 5'
              end of the COL19A1 gene for collagen XIX alpha 1 and a CpG
              island, complete sequence
          Length = 115224

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 490    gcatgtagtgctattgctact 510
              |||||||||||||||||||||
Sbjct: 100402 gcatgtagtgctattgctact 100382



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>emb|AL109843.25|HSDJ763G1 Human DNA sequence from clone RP4-763G1 on chromosome 1p31.2-32.1
            Contains the 5' end of the gene for interleukin-23
            receptor (IL23R), complete sequence
          Length = 114713

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 734  atcttttacttttttgagaaa 754
            |||||||||||||||||||||
Sbjct: 9881 atcttttacttttttgagaaa 9861



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>emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10 on chromosome 11p13 Contains a
             pseudogene similar to heterogeneous nuclear
             ribonucleoprotein, the gene for GA17 protein, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 107652

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 576   ccactgaacccgtccggcaaaaggcagtt 604
             |||||| ||||| ||||||||||||||||
Sbjct: 55163 ccactgcacccggccggcaaaaggcagtt 55135



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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 519    tgctggaggacaagtcgttca 539
              |||||||||||||||||||||
Sbjct: 642536 tgctggaggacaagtcgttca 642556



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>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence
          Length = 165090

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 412   caggctctgtctgaggtgaag 432
             |||||||||||||||||||||
Sbjct: 26825 caggctctgtctgaggtgaag 26845



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>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete
             sequence
          Length = 172449

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 412   caggctctgtctgaggtgaag 432
             |||||||||||||||||||||
Sbjct: 74810 caggctctgtctgaggtgaag 74790



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>gb|AC154488.2| Mus musculus BAC clone RP24-119K2 from chromosome 17, complete sequence
          Length = 162190

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    ctctccacagggcaacaagag 67
             |||||||||||||||||||||
Sbjct: 31574 ctctccacagggcaacaagag 31554



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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 576   ccactgaacccgtccggcaaaaggcagtt 604
             |||||| ||||| ||||||||||||||||
Sbjct: 10490 ccactgcacccggccggcaaaaggcagtt 10462



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>emb|BX323831.7| Zebrafish DNA sequence from clone CH211-12E7 in linkage group 23,
             complete sequence
          Length = 180638

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 628   ttgaacagaggaaagaatctc 648
             |||||||||||||||||||||
Sbjct: 49406 ttgaacagaggaaagaatctc 49426



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>gb|AC108404.8| Mus musculus chromosome 18, clone RP24-491I16, complete sequence
          Length = 196638

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 509   ctgtcttgtgtgctggaggacaagt 533
             ||||||||||| |||||||||||||
Sbjct: 55688 ctgtcttgtgtactggaggacaagt 55712



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>ref|NM_209418.1| Eremothecium gossypii ADL032Wp (ADL032W), mRNA
          Length = 2331

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 519 tgctggaggacaagtcgttca 539
           |||||||||||||||||||||
Sbjct: 95  tgctggaggacaagtcgttca 115



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>gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, complete sequence
          Length = 227840

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 509   ctgtcttgtgtgctggaggacaagt 533
             ||||||||||| |||||||||||||
Sbjct: 90563 ctgtcttgtgtactggaggacaagt 90539


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 174,189,040
Number of extensions: 9347201
Number of successful extensions: 190968
Number of sequences better than 10.0: 21
Number of HSP's gapped: 190968
Number of HSP's successfully gapped: 23
Length of query: 1001
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 978
Effective length of database: 18,503,978,556
Effective search space: 18096891027768
Effective search space used: 18096891027768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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