Clone Name | FLbaf98l21 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.96 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 tttcagaaaccatgaagctagt 347 |||||||||||||||||||||| Sbjct: 31067724 tttcagaaaccatgaagctagt 31067703
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 44.1 bits (22), Expect = 0.96 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 tttcagaaaccatgaagctagt 347 |||||||||||||||||||||| Sbjct: 124703 tttcagaaaccatgaagctagt 124682
>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence Length = 145019 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 ctttcagaaaccatgaagcta 345 ||||||||||||||||||||| Sbjct: 15972 ctttcagaaaccatgaagcta 15992
>gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, complete sequence Length = 177747 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 ctctccacagggcaacaagag 67 ||||||||||||||||||||| Sbjct: 3116 ctctccacagggcaacaagag 3136
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence Length = 163547 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 caggctctgtctgaggtgaag 432 ||||||||||||||||||||| Sbjct: 135457 caggctctgtctgaggtgaag 135477
>gb|AC182701.2| Populus trichocarpa clone Pop1-74K8, complete sequence Length = 93140 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 818 ctctcactcatgttgagatta 838 ||||||||||||||||||||| Sbjct: 46166 ctctcactcatgttgagatta 46146 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 818 ctctcactcatgttgagatta 838 ||||||||||||||||||||| Sbjct: 60399 ctctcactcatgttgagatta 60379 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 818 ctctcactcatgttgagatta 838 ||||||||||||||||||||| Sbjct: 64515 ctctcactcatgttgagatta 64495
>gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 215272 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 865 tacgacatttcatattatttt 885 ||||||||||||||||||||| Sbjct: 9711 tacgacatttcatattatttt 9691
>emb|Z68299.1| Caenorhabditis elegans Cosmid T04B2, complete sequence Length = 20535 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 734 atcttttacttttttgagaaa 754 ||||||||||||||||||||| Sbjct: 2566 atcttttacttttttgagaaa 2546
>emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in linkage group 23, complete sequence Length = 229608 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 ttgaacagaggaaagaatctc 648 ||||||||||||||||||||| Sbjct: 149132 ttgaacagaggaaagaatctc 149112
>emb|AL359539.11| Human DNA sequence from clone RP11-719E16 on chromosome 6 Contains the 5' end of the COL19A1 gene for collagen XIX alpha 1 and a CpG island, complete sequence Length = 115224 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 gcatgtagtgctattgctact 510 ||||||||||||||||||||| Sbjct: 100402 gcatgtagtgctattgctact 100382
>emb|AL109843.25|HSDJ763G1 Human DNA sequence from clone RP4-763G1 on chromosome 1p31.2-32.1 Contains the 5' end of the gene for interleukin-23 receptor (IL23R), complete sequence Length = 114713 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 734 atcttttacttttttgagaaa 754 ||||||||||||||||||||| Sbjct: 9881 atcttttacttttttgagaaa 9861
>emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10 on chromosome 11p13 Contains a pseudogene similar to heterogeneous nuclear ribonucleoprotein, the gene for GA17 protein, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 107652 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 576 ccactgaacccgtccggcaaaaggcagtt 604 |||||| ||||| |||||||||||||||| Sbjct: 55163 ccactgcacccggccggcaaaaggcagtt 55135
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 519 tgctggaggacaagtcgttca 539 ||||||||||||||||||||| Sbjct: 642536 tgctggaggacaagtcgttca 642556
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 caggctctgtctgaggtgaag 432 ||||||||||||||||||||| Sbjct: 26825 caggctctgtctgaggtgaag 26845
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete sequence Length = 172449 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 412 caggctctgtctgaggtgaag 432 ||||||||||||||||||||| Sbjct: 74810 caggctctgtctgaggtgaag 74790
>gb|AC154488.2| Mus musculus BAC clone RP24-119K2 from chromosome 17, complete sequence Length = 162190 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 ctctccacagggcaacaagag 67 ||||||||||||||||||||| Sbjct: 31574 ctctccacagggcaacaagag 31554
>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence Length = 138141 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 576 ccactgaacccgtccggcaaaaggcagtt 604 |||||| ||||| |||||||||||||||| Sbjct: 10490 ccactgcacccggccggcaaaaggcagtt 10462
>emb|BX323831.7| Zebrafish DNA sequence from clone CH211-12E7 in linkage group 23, complete sequence Length = 180638 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 628 ttgaacagaggaaagaatctc 648 ||||||||||||||||||||| Sbjct: 49406 ttgaacagaggaaagaatctc 49426
>gb|AC108404.8| Mus musculus chromosome 18, clone RP24-491I16, complete sequence Length = 196638 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 509 ctgtcttgtgtgctggaggacaagt 533 ||||||||||| ||||||||||||| Sbjct: 55688 ctgtcttgtgtactggaggacaagt 55712
>ref|NM_209418.1| Eremothecium gossypii ADL032Wp (ADL032W), mRNA Length = 2331 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 519 tgctggaggacaagtcgttca 539 ||||||||||||||||||||| Sbjct: 95 tgctggaggacaagtcgttca 115
>gb|AC101682.8| Mus musculus chromosome 18, clone RP23-183C23, complete sequence Length = 227840 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 ctgtcttgtgtgctggaggacaagt 533 ||||||||||| ||||||||||||| Sbjct: 90563 ctgtcttgtgtactggaggacaagt 90539 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 174,189,040 Number of extensions: 9347201 Number of successful extensions: 190968 Number of sequences better than 10.0: 21 Number of HSP's gapped: 190968 Number of HSP's successfully gapped: 23 Length of query: 1001 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 978 Effective length of database: 18,503,978,556 Effective search space: 18096891027768 Effective search space used: 18096891027768 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)