No.
Definition
Score (bits)
E Value
1 ref|NM_001073145.1| Oryza sativa (japonica cultivar-group) Os12g...
238
1e-58
2 dbj|AK072331.1| Oryza sativa (japonica cultivar-group) cDNA clon...
238
1e-58
3 dbj|AK119246.1| Oryza sativa (japonica cultivar-group) cDNA clon...
180
2e-41
4 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
141
2e-29
5 emb|AL731890.2|CNS08C8U Oryza sativa chromosome 12, . BAC OJ1563...
141
2e-29
6 gb|AC184067.2| Populus trichocarpa clone Pop1-111E3, complete se...
50
0.053
7 gb|BT028194.1| Gasterosteus aculeatus clone CNB155-E03 mRNA sequ...
46
0.82
8 gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118...
46
0.82
9 gb|U00044.1| Caenorhabditis elegans cosmid K04C2, complete sequence
46
0.82
10 ref|NM_066098.3| Caenorhabditis elegans K04C2.2 (K04C2.2) mRNA, ...
46
0.82
11 gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, comp...
46
0.82
12 gb|AY727089.1| Eupatorium hyssopifolium psbM-trnD intergenic spa...
46
0.82
13 gb|AC102176.8| Mus musculus chromosome 15, clone RP23-480E14, co...
44
3.2
14 gb|AC100730.8| Mus musculus chromosome 15, clone RP24-288B1, com...
44
3.2
15 gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome...
44
3.2
16 gb|AC132252.2| Mus musculus BAC clone RP24-450A24 from chromosom...
44
3.2
17 ref|XM_447350.1| Candida glabrata CBS138 hypothetical protein (C...
44
3.2
18 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
44
3.2
19 emb|AL355392.7| Human DNA sequence from clone RP5-1187J4 on chro...
44
3.2
20 emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp...
44
3.2
21 gb|AC091391.1|AC091391 Homo sapiens chromosome X clone IE11122 m...
44
3.2
22 dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic D...
44
3.2
23 gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, co...
44
3.2
24 gb|AC154499.2| Mus musculus BAC clone RP23-205I1 from 14, comple...
44
3.2
25 gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, com...
44
3.2
>ref|NM_001073145.1 | Oryza sativa (japonica cultivar-group) Os12g0297500 (Os12g0297500)
mRNA, complete cds
Length = 4066
Score = 238 bits (120), Expect = 1e-58
Identities = 204/232 (87%)
Strand = Plus / Plus
Query: 1 aagagtattctgaagcacttctttctgtattccctgaaaatgtcaaggtccttgggaatg 60
||||||| |||||||||||||||||| ||||||||||||| || | ||| ||||||| |
Sbjct: 2023 aagagtactctgaagcacttctttctatattccctgaaaaagtaatggttattgggaaag 2082
Query: 61 cccttggaataccagagaacagtgtgagaacttacaccgaggctgaaattcgtgctggtg 120
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 2083 cccttggaataccagataacagtgtgagaacttacacagaggcagaaattcgtgctggca 2142
Query: 121 ttatttttcaggtctccaaactttgcactgtacttttgaaagctgttcgagtagtaattg 180
|| |||||||||| || ||||| ||||| |||||| |||||| |||||| |||| |||
Sbjct: 2143 ttgtttttcaggtatctaaactatgcacagtacttcagaaagcaattcgagaagtacttg 2202
Query: 181 gatcgtctggctgggatgttcttgttcctggagtagcccatggagctctgat 232
|||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 2203 gatcaactggctgggatgttcttgttcctggagtggcccatggaactctgat 2254
Score = 180 bits (91), Expect = 2e-41
Identities = 211/251 (84%)
Strand = Plus / Plus
Query: 1823 gagcttgcagaagcatcagttgaatcatctggtgctaaagctaaagcttgtggaactctt 1882
|||||| ||||||| ||||| |||||| ||||||| |||||| || || ||||||||
Sbjct: 2715 gagctttcagaagcttcagtggaatcagctggtgcaaaagctgctgcatgcagaactctt 2774
Query: 1883 tctgtgctggcctcactgtcaaataaagtctacaacgatcaaggaattccagcggcattc 1942
||||| || || ||| |||| ||||||||||| | ||||||||| ||||||| || ||
Sbjct: 2775 tctgttcttgcttcattgtctaataaagtctatagtgatcaaggagttccagcagccttt 2834
Query: 1943 aaagttccttccggggctgtgcttccatttggatcaatggaggatgcgctgaagaaaagt 2002
| ||| ||||| || |||||| | |||||||||||||||||||||||||| |||||||||
Sbjct: 2835 agagtcccttctggtgctgtgataccatttggatcaatggaggatgcgctcaagaaaagt 2894
Query: 2003 ggatcacttgaatcgtttacaagccttctagacaagatcgagacagctgaaatcgaaaat 2062
|||||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 2895 ggatcactggaatcctttacaagccttctagaaaagattgaaacagccaaagtcgaaaat 2954
Query: 2063 ggcgaacttga 2073
|| ||| ||||
Sbjct: 2955 ggtgaagttga 2965
Score = 178 bits (90), Expect = 9e-41
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 1332 aggtcaaagctgctggcgataatatagtgggtgttattcttctgcaagagttacctcacc 1391
|||||||||||||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 2344 aggtcaaagctgctggggataatatagttggtgttattcttcttcaggaactacctcacc 2403
Query: 1392 tatcacatcttggtgttagagctcgtcaagagcaagttgtatttgtaacttgtgaagatg 1451
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct: 2404 tttcacatcttggtgttagagctcgtcaagagaatgttgtatttgtaacttgtgaatatg 2463
Query: 1452 atgacaaaattgcagatatgaggttgcttgagggaaaa 1489
|||||| | || ||||| || |||||||||||||||
Sbjct: 2464 atgacacagttacagatgtgtatttgcttgagggaaaa 2501
Score = 107 bits (54), Expect = 3e-19
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1163 gaaagaatcattcctggatcattgccttcatccatcaaaggacctgtggttctacttgta 1222
|||||||| ||||||||||||| |||||||| |||||| ||||||||||||| |||||
Sbjct: 2262 gaaagaattcttcctggatcattaccttcatctgtcaaagaacctgtggttctaattgta 2321
Query: 1223 aataaggctgatggagatgaagaggt 1248
|||||||||||||||||||||||||
Sbjct: 2322 gataaggctgatggagatgaagaggt 2347
Score = 67.9 bits (34), Expect = 2e-07
Identities = 109/134 (81%)
Strand = Plus / Plus
Query: 2675 accttcaggcagaagttcggtcagcggctggccgccgtggggcagtacctggagcagagg 2734
||||| ||| || |||| |||||||| ||||| || | || ||||| |||||||||| |
Sbjct: 3567 acctttaggaagcagtttggtcagcgactggctgcgattggccagtatctggagcagaag 3626
Query: 2735 ttcgggagcgcccaggacgtggagggctgcatggtcggggaagacatctacatagtgcag 2794
|||||||| || ||||| ||||| || ||| |||| ||| |||| || | ||||||||
Sbjct: 3627 ttcgggagtgcacaggatgtggaaggttgcctggttgggaaagatatttttatagtgcaa 3686
Query: 2795 agcaggccacagcc 2808
||||||||||||||
Sbjct: 3687 agcaggccacagcc 3700
Score = 58.0 bits (29), Expect = 2e-04
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 2397 agccagagctatccttcgtgctccacacggtcagcccctcggaccacgacaccagggtcg 2456
||||||| || ||||||||||| || || || ||||| | ||||| ||| ||| ||| |
Sbjct: 3289 agccagatctctccttcgtgcttcatactgtttgccccgctgaccatgaccccaaggttg 3348
Query: 2457 tcgaggctgaggttgccccggggctgggcgagacccttgccgctggcacccgcggcaccc 2516
|| |||||||||| ||||| |||||||| || || ||||| | || ||||| |||||||
Sbjct: 3349 tccaggctgaggtcgcccctgggctgggtgaaacgcttgcttcaggaacccgtggcaccc 3408
Query: 2517 cgtgg 2521
|||||
Sbjct: 3409 cgtgg 3413
Score = 48.1 bits (24), Expect = 0.21
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 2144 aaaacaatcttccctcaggatggccggcttatcgtcaggtccagcgctaatgtggaggac 2203
|||| ||||||||| ||||||| |||| | || || || || || ||||||||||||||
Sbjct: 3036 aaaagaatcttcccacaggatgtccggttgattgttagatctagtgctaatgtggaggat 3095
Query: 2204 ctggccgggatgtcagctgc 2223
|||| || |||||||||||
Sbjct: 3096 ttggctggtatgtcagctgc 3115
>dbj|AK072331.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023039L19, full
insert sequence
Length = 4068
Score = 238 bits (120), Expect = 1e-58
Identities = 204/232 (87%)
Strand = Plus / Plus
Query: 1 aagagtattctgaagcacttctttctgtattccctgaaaatgtcaaggtccttgggaatg 60
||||||| |||||||||||||||||| ||||||||||||| || | ||| ||||||| |
Sbjct: 2025 aagagtactctgaagcacttctttctatattccctgaaaaagtaatggttattgggaaag 2084
Query: 61 cccttggaataccagagaacagtgtgagaacttacaccgaggctgaaattcgtgctggtg 120
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 2085 cccttggaataccagataacagtgtgagaacttacacagaggcagaaattcgtgctggca 2144
Query: 121 ttatttttcaggtctccaaactttgcactgtacttttgaaagctgttcgagtagtaattg 180
|| |||||||||| || ||||| ||||| |||||| |||||| |||||| |||| |||
Sbjct: 2145 ttgtttttcaggtatctaaactatgcacagtacttcagaaagcaattcgagaagtacttg 2204
Query: 181 gatcgtctggctgggatgttcttgttcctggagtagcccatggagctctgat 232
|||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 2205 gatcaactggctgggatgttcttgttcctggagtggcccatggaactctgat 2256
Score = 180 bits (91), Expect = 2e-41
Identities = 211/251 (84%)
Strand = Plus / Plus
Query: 1823 gagcttgcagaagcatcagttgaatcatctggtgctaaagctaaagcttgtggaactctt 1882
|||||| ||||||| ||||| |||||| ||||||| |||||| || || ||||||||
Sbjct: 2717 gagctttcagaagcttcagtggaatcagctggtgcaaaagctgctgcatgcagaactctt 2776
Query: 1883 tctgtgctggcctcactgtcaaataaagtctacaacgatcaaggaattccagcggcattc 1942
||||| || || ||| |||| ||||||||||| | ||||||||| ||||||| || ||
Sbjct: 2777 tctgttcttgcttcattgtctaataaagtctatagtgatcaaggagttccagcagccttt 2836
Query: 1943 aaagttccttccggggctgtgcttccatttggatcaatggaggatgcgctgaagaaaagt 2002
| ||| ||||| || |||||| | |||||||||||||||||||||||||| |||||||||
Sbjct: 2837 agagtcccttctggtgctgtgataccatttggatcaatggaggatgcgctcaagaaaagt 2896
Query: 2003 ggatcacttgaatcgtttacaagccttctagacaagatcgagacagctgaaatcgaaaat 2062
|||||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 2897 ggatcactggaatcctttacaagccttctagaaaagattgaaacagccaaagtcgaaaat 2956
Query: 2063 ggcgaacttga 2073
|| ||| ||||
Sbjct: 2957 ggtgaagttga 2967
Score = 178 bits (90), Expect = 9e-41
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 1332 aggtcaaagctgctggcgataatatagtgggtgttattcttctgcaagagttacctcacc 1391
|||||||||||||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 2346 aggtcaaagctgctggggataatatagttggtgttattcttcttcaggaactacctcacc 2405
Query: 1392 tatcacatcttggtgttagagctcgtcaagagcaagttgtatttgtaacttgtgaagatg 1451
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct: 2406 tttcacatcttggtgttagagctcgtcaagagaatgttgtatttgtaacttgtgaatatg 2465
Query: 1452 atgacaaaattgcagatatgaggttgcttgagggaaaa 1489
|||||| | || ||||| || |||||||||||||||
Sbjct: 2466 atgacacagttacagatgtgtatttgcttgagggaaaa 2503
Score = 107 bits (54), Expect = 3e-19
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1163 gaaagaatcattcctggatcattgccttcatccatcaaaggacctgtggttctacttgta 1222
|||||||| ||||||||||||| |||||||| |||||| ||||||||||||| |||||
Sbjct: 2264 gaaagaattcttcctggatcattaccttcatctgtcaaagaacctgtggttctaattgta 2323
Query: 1223 aataaggctgatggagatgaagaggt 1248
|||||||||||||||||||||||||
Sbjct: 2324 gataaggctgatggagatgaagaggt 2349
Score = 67.9 bits (34), Expect = 2e-07
Identities = 109/134 (81%)
Strand = Plus / Plus
Query: 2675 accttcaggcagaagttcggtcagcggctggccgccgtggggcagtacctggagcagagg 2734
||||| ||| || |||| |||||||| ||||| || | || ||||| |||||||||| |
Sbjct: 3569 acctttaggaagcagtttggtcagcgactggctgcgattggccagtatctggagcagaag 3628
Query: 2735 ttcgggagcgcccaggacgtggagggctgcatggtcggggaagacatctacatagtgcag 2794
|||||||| || ||||| ||||| || ||| |||| ||| |||| || | ||||||||
Sbjct: 3629 ttcgggagtgcacaggatgtggaaggttgcctggttgggaaagatatttttatagtgcaa 3688
Query: 2795 agcaggccacagcc 2808
||||||||||||||
Sbjct: 3689 agcaggccacagcc 3702
Score = 58.0 bits (29), Expect = 2e-04
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 2397 agccagagctatccttcgtgctccacacggtcagcccctcggaccacgacaccagggtcg 2456
||||||| || ||||||||||| || || || ||||| | ||||| ||| ||| ||| |
Sbjct: 3291 agccagatctctccttcgtgcttcatactgtttgccccgctgaccatgaccccaaggttg 3350
Query: 2457 tcgaggctgaggttgccccggggctgggcgagacccttgccgctggcacccgcggcaccc 2516
|| |||||||||| ||||| |||||||| || || ||||| | || ||||| |||||||
Sbjct: 3351 tccaggctgaggtcgcccctgggctgggtgaaacgcttgcttcaggaacccgtggcaccc 3410
Query: 2517 cgtgg 2521
|||||
Sbjct: 3411 cgtgg 3415
Score = 48.1 bits (24), Expect = 0.21
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 2144 aaaacaatcttccctcaggatggccggcttatcgtcaggtccagcgctaatgtggaggac 2203
|||| ||||||||| ||||||| |||| | || || || || || ||||||||||||||
Sbjct: 3038 aaaagaatcttcccacaggatgtccggttgattgttagatctagtgctaatgtggaggat 3097
Query: 2204 ctggccgggatgtcagctgc 2223
|||| || |||||||||||
Sbjct: 3098 ttggctggtatgtcagctgc 3117
>dbj|AK119246.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C04, full
insert sequence
Length = 1832
Score = 180 bits (91), Expect = 2e-41
Identities = 211/251 (84%)
Strand = Plus / Plus
Query: 1823 gagcttgcagaagcatcagttgaatcatctggtgctaaagctaaagcttgtggaactctt 1882
|||||| ||||||| ||||| |||||| ||||||| |||||| || || ||||||||
Sbjct: 647 gagctttcagaagcttcagtggaatcagctggtgcaaaagctgctgcatgcagaactctt 706
Query: 1883 tctgtgctggcctcactgtcaaataaagtctacaacgatcaaggaattccagcggcattc 1942
||||| || || ||| |||| ||||||||||| | ||||||||| ||||||| || ||
Sbjct: 707 tctgttcttgcttcattgtctaataaagtctatagtgatcaaggagttccagcagccttt 766
Query: 1943 aaagttccttccggggctgtgcttccatttggatcaatggaggatgcgctgaagaaaagt 2002
| ||| ||||| || |||||| | |||||||||||||||||||||||||| |||||||||
Sbjct: 767 agagtcccttctggtgctgtgataccatttggatcaatggaggatgcgctcaagaaaagt 826
Query: 2003 ggatcacttgaatcgtttacaagccttctagacaagatcgagacagctgaaatcgaaaat 2062
|||||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 827 ggatcactggaatcctttacaagccttctagaaaagattgaaacagccaaagtcgaaaat 886
Query: 2063 ggcgaacttga 2073
|| ||| ||||
Sbjct: 887 ggtgaagttga 897
Score = 178 bits (90), Expect = 9e-41
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 1332 aggtcaaagctgctggcgataatatagtgggtgttattcttctgcaagagttacctcacc 1391
|||||||||||||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct: 276 aggtcaaagctgctggggataatatagttggtgttattcttcttcaggaactacctcacc 335
Query: 1392 tatcacatcttggtgttagagctcgtcaagagcaagttgtatttgtaacttgtgaagatg 1451
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct: 336 tttcacatcttggtgttagagctcgtcaagagaatgttgtatttgtaacttgtgaatatg 395
Query: 1452 atgacaaaattgcagatatgaggttgcttgagggaaaa 1489
|||||| | || ||||| || |||||||||||||||
Sbjct: 396 atgacacagttacagatgtgtatttgcttgagggaaaa 433
Score = 149 bits (75), Expect = 8e-32
Identities = 129/147 (87%)
Strand = Plus / Plus
Query: 78 aacagtgtgagaacttacaccgaggctgaaattcgtgctggtgttatttttcaggtctcc 137
|||||||||||||||||||| ||||| |||||||||||||| || |||||||||| ||
Sbjct: 2 aacagtgtgagaacttacacagaggcagaaattcgtgctggcattgtttttcaggtatct 61
Query: 138 aaactttgcactgtacttttgaaagctgttcgagtagtaattggatcgtctggctgggat 197
||||| ||||| |||||| |||||| |||||| |||| ||||||| |||||||||||
Sbjct: 62 aaactatgcacagtacttcagaaagcaattcgagaagtacttggatcaactggctgggat 121
Query: 198 gttcttgttcctggagtagcccatgga 224
||||||||||||||||| |||||||||
Sbjct: 122 gttcttgttcctggagtggcccatgga 148
Score = 109 bits (55), Expect = 7e-20
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 1158 aggtagaaagaatcattcctggatcattgccttcatccatcaaaggacctgtggttctac 1217
|||| |||||||| ||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 189 aggtggaaagaattcttcctggatcattaccttcatctgtcaaagaacctgtggttctaa 248
Query: 1218 ttgtaaataaggctgatggagatgaagaggt 1248
||||| |||||||||||||||||||||||||
Sbjct: 249 ttgtagataaggctgatggagatgaagaggt 279
Score = 67.9 bits (34), Expect = 2e-07
Identities = 109/134 (81%)
Strand = Plus / Plus
Query: 2675 accttcaggcagaagttcggtcagcggctggccgccgtggggcagtacctggagcagagg 2734
||||| ||| || |||| |||||||| ||||| || | || ||||| |||||||||| |
Sbjct: 1499 acctttaggaagcagtttggtcagcgactggctgcgattggccagtatctggagcagaag 1558
Query: 2735 ttcgggagcgcccaggacgtggagggctgcatggtcggggaagacatctacatagtgcag 2794
|||||||| || ||||| ||||| || ||| |||| ||| |||| || | ||||||||
Sbjct: 1559 ttcgggagtgcacaggatgtggaaggttgcctggttgggaaagatatttttatagtgcaa 1618
Query: 2795 agcaggccacagcc 2808
||||||||||||||
Sbjct: 1619 agcaggccacagcc 1632
Score = 58.0 bits (29), Expect = 2e-04
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 2397 agccagagctatccttcgtgctccacacggtcagcccctcggaccacgacaccagggtcg 2456
||||||| || ||||||||||| || || || ||||| | ||||| ||| ||| ||| |
Sbjct: 1221 agccagatctctccttcgtgcttcatactgtttgccccgctgaccatgaccccaaggttg 1280
Query: 2457 tcgaggctgaggttgccccggggctgggcgagacccttgccgctggcacccgcggcaccc 2516
|| |||||||||| ||||| |||||||| || || ||||| | || ||||| |||||||
Sbjct: 1281 tccaggctgaggtcgcccctgggctgggtgaaacgcttgcttcaggaacccgtggcaccc 1340
Query: 2517 cgtgg 2521
|||||
Sbjct: 1341 cgtgg 1345
Score = 48.1 bits (24), Expect = 0.21
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 2144 aaaacaatcttccctcaggatggccggcttatcgtcaggtccagcgctaatgtggaggac 2203
|||| ||||||||| ||||||| |||| | || || || || || ||||||||||||||
Sbjct: 968 aaaagaatcttcccacaggatgtccggttgattgttagatctagtgctaatgtggaggat 1027
Query: 2204 ctggccgggatgtcagctgc 2223
|||| || |||||||||||
Sbjct: 1028 ttggctggtatgtcagctgc 1047
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
Length = 27566993
Score = 141 bits (71), Expect = 2e-29
Identities = 134/155 (86%)
Strand = Plus / Minus
Query: 1919 gatcaaggaattccagcggcattcaaagttccttccggggctgtgcttccatttggatca 1978
||||||||| ||||||| || || | ||| ||||| || |||||| | ||||||||||||
Sbjct: 11727711 gatcaaggagttccagcagcctttagagtcccttctggtgctgtgataccatttggatca 11727652
Query: 1979 atggaggatgcgctgaagaaaagtggatcacttgaatcgtttacaagccttctagacaag 2038
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 11727651 atggaggatgcgctcaagaaaagtggatcactggaatcctttacaagccttctagaaaag 11727592
Query: 2039 atcgagacagctgaaatcgaaaatggcgaacttga 2073
|| || ||||| || |||||||||| ||| ||||
Sbjct: 11727591 attgaaacagccaaagtcgaaaatggtgaagttga 11727557
Score = 133 bits (67), Expect = 5e-27
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 1323 ttatttgacaggtcaaagctgctggcgataatatagtgggtgttattcttctgcaagagt 1382
|||||||| |||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 11730656 ttatttgataggtcaaagctgctggggataatatagttggtgttattcttcttcaggaac 11730597
Query: 1383 tacctcacctatcacatcttggtgttagagctcgtcaag 1421
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 11730596 tacctcacctttcacatcttggtgttagagctcgtcaag 11730558
Score = 129 bits (65), Expect = 7e-26
Identities = 95/105 (90%)
Strand = Plus / Minus
Query: 1151 tttatttaggtagaaagaatcattcctggatcattgccttcatccatcaaaggacctgtg 1210
|||||| |||| |||||||| ||||||||||||| |||||||| |||||| |||||||
Sbjct: 11730825 tttattcaggtggaaagaattcttcctggatcattaccttcatctgtcaaagaacctgtg 11730766
Query: 1211 gttctacttgtaaataaggctgatggagatgaagaggtactttgg 1255
|||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 11730765 gttctaattgtagataaggctgatggagatgaagaggtactttgg 11730721
Score = 115 bits (58), Expect = 1e-21
Identities = 115/134 (85%)
Strand = Plus / Minus
Query: 124 tttttcaggtctccaaactttgcactgtacttttgaaagctgttcgagtagtaattggat 183
|||||||||| || ||||| ||||| |||||| |||||| |||||| |||| ||||||
Sbjct: 11731999 tttttcaggtatctaaactatgcacagtacttcagaaagcaattcgagaagtacttggat 11731940
Query: 184 cgtctggctgggatgttcttgttcctggagtagcccatggagctctgatacaggtatctt 243
| |||||||||||||||||||||||||||| ||||||||| ||||||| | ||||| ||
Sbjct: 11731939 caactggctgggatgttcttgttcctggagtggcccatggaactctgatgcgggtatttt 11731880
Query: 244 ctggaactatgcag 257
||| ||||| ||||
Sbjct: 11731879 ctgtaactaagcag 11731866
Score = 101 bits (51), Expect = 2e-17
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 52 ttgggaatgcccttggaataccagagaacagtgtgagaacttacaccgaggctgaaattc 111
||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct: 11732164 ttgggaaagcccttggaataccagataacagtgtgagaacttacacagaggcagaaattc 11732105
Query: 112 gtgctgg 118
|||||||
Sbjct: 11732104 gtgctgg 11732098
Score = 67.9 bits (34), Expect = 2e-07
Identities = 109/134 (81%)
Strand = Plus / Minus
Query: 2675 accttcaggcagaagttcggtcagcggctggccgccgtggggcagtacctggagcagagg 2734
||||| ||| || |||| |||||||| ||||| || | || ||||| |||||||||| |
Sbjct: 11726955 acctttaggaagcagtttggtcagcgactggctgcgattggccagtatctggagcagaag 11726896
Query: 2735 ttcgggagcgcccaggacgtggagggctgcatggtcggggaagacatctacatagtgcag 2794
|||||||| || ||||| ||||| || ||| |||| ||| |||| || | ||||||||
Sbjct: 11726895 ttcgggagtgcacaggatgtggaaggttgcctggttgggaaagatatttttatagtgcaa 11726836
Query: 2795 agcaggccacagcc 2808
||||||||||||||
Sbjct: 11726835 agcaggccacagcc 11726822
Score = 65.9 bits (33), Expect = 9e-07
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 1427 gttgtatttgtaacttgtgaagatgatgacaaaattgcagatatgaggttgcttgaggga 1486
||||||||||||||||||||| ||||||||| | || ||||| || ||||||||||||
Sbjct: 11730477 gttgtatttgtaacttgtgaatatgatgacacagttacagatgtgtatttgcttgaggga 11730418
Query: 1487 aaacatgtcaggt 1499
||| || ||||||
Sbjct: 11730417 aaatatatcaggt 11730405
Score = 63.9 bits (32), Expect = 3e-06
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 aagagtattctgaagcacttctttctgtattccctgaaaa 40
||||||| |||||||||||||||||| |||||||||||||
Sbjct: 11733682 aagagtactctgaagcacttctttctatattccctgaaaa 11733643
Score = 58.0 bits (29), Expect = 2e-04
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 2397 agccagagctatccttcgtgctccacacggtcagcccctcggaccacgacaccagggtcg 2456
||||||| || ||||||||||| || || || ||||| | ||||| ||| ||| ||| |
Sbjct: 11727233 agccagatctctccttcgtgcttcatactgtttgccccgctgaccatgaccccaaggttg 11727174
Query: 2457 tcgaggctgaggttgccccggggctgggcgagacccttgccgctggcacccgcggcaccc 2516
|| |||||||||| ||||| |||||||| || || ||||| | || ||||| |||||||
Sbjct: 11727173 tccaggctgaggtcgcccctgggctgggtgaaacgcttgcttcaggaacccgtggcaccc 11727114
Query: 2517 cgtgg 2521
|||||
Sbjct: 11727113 cgtgg 11727109
Score = 48.1 bits (24), Expect = 0.21
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 2144 aaaacaatcttccctcaggatggccggcttatcgtcaggtccagcgctaatgtggaggac 2203
|||| ||||||||| ||||||| |||| | || || || || || ||||||||||||||
Sbjct: 11727486 aaaagaatcttcccacaggatgtccggttgattgttagatctagtgctaatgtggaggat 11727427
Query: 2204 ctggccgggatgtcagctgc 2223
|||| || |||||||||||
Sbjct: 11727426 ttggctggtatgtcagctgc 11727407
Score = 48.1 bits (24), Expect = 0.21
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 1823 gagcttgcagaagcatcagttgaatcatctggtgctaaagctaaagcttgtggaactctt 1882
|||||| ||||||| ||||| |||||| ||||||| |||||| || || ||||||||
Sbjct: 11728312 gagctttcagaagcttcagtggaatcagctggtgcaaaagctgctgcatgcagaactctt 11728253
Query: 1883 tctgtgctggcctcactgtcaaataaag 1910
||||| || || ||| |||| |||||||
Sbjct: 11728252 tctgttcttgcttcattgtctaataaag 11728225
>emb|AL731890.2 |CNS08C8U Oryza sativa chromosome 12, . BAC OJ1563_B02 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 101314
Score = 141 bits (71), Expect = 2e-29
Identities = 134/155 (86%)
Strand = Plus / Plus
Query: 1919 gatcaaggaattccagcggcattcaaagttccttccggggctgtgcttccatttggatca 1978
||||||||| ||||||| || || | ||| ||||| || |||||| | ||||||||||||
Sbjct: 28955 gatcaaggagttccagcagcctttagagtcccttctggtgctgtgataccatttggatca 29014
Query: 1979 atggaggatgcgctgaagaaaagtggatcacttgaatcgtttacaagccttctagacaag 2038
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 29015 atggaggatgcgctcaagaaaagtggatcactggaatcctttacaagccttctagaaaag 29074
Query: 2039 atcgagacagctgaaatcgaaaatggcgaacttga 2073
|| || ||||| || |||||||||| ||| ||||
Sbjct: 29075 attgaaacagccaaagtcgaaaatggtgaagttga 29109
Score = 133 bits (67), Expect = 5e-27
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 1323 ttatttgacaggtcaaagctgctggcgataatatagtgggtgttattcttctgcaagagt 1382
|||||||| |||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct: 26010 ttatttgataggtcaaagctgctggggataatatagttggtgttattcttcttcaggaac 26069
Query: 1383 tacctcacctatcacatcttggtgttagagctcgtcaag 1421
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 26070 tacctcacctttcacatcttggtgttagagctcgtcaag 26108
Score = 129 bits (65), Expect = 7e-26
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1151 tttatttaggtagaaagaatcattcctggatcattgccttcatccatcaaaggacctgtg 1210
|||||| |||| |||||||| ||||||||||||| |||||||| |||||| |||||||
Sbjct: 25841 tttattcaggtggaaagaattcttcctggatcattaccttcatctgtcaaagaacctgtg 25900
Query: 1211 gttctacttgtaaataaggctgatggagatgaagaggtactttgg 1255
|||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 25901 gttctaattgtagataaggctgatggagatgaagaggtactttgg 25945
Score = 115 bits (58), Expect = 1e-21
Identities = 115/134 (85%)
Strand = Plus / Plus
Query: 124 tttttcaggtctccaaactttgcactgtacttttgaaagctgttcgagtagtaattggat 183
|||||||||| || ||||| ||||| |||||| |||||| |||||| |||| ||||||
Sbjct: 24667 tttttcaggtatctaaactatgcacagtacttcagaaagcaattcgagaagtacttggat 24726
Query: 184 cgtctggctgggatgttcttgttcctggagtagcccatggagctctgatacaggtatctt 243
| |||||||||||||||||||||||||||| ||||||||| ||||||| | ||||| ||
Sbjct: 24727 caactggctgggatgttcttgttcctggagtggcccatggaactctgatgcgggtatttt 24786
Query: 244 ctggaactatgcag 257
||| ||||| ||||
Sbjct: 24787 ctgtaactaagcag 24800
Score = 101 bits (51), Expect = 2e-17
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 52 ttgggaatgcccttggaataccagagaacagtgtgagaacttacaccgaggctgaaattc 111
||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct: 24502 ttgggaaagcccttggaataccagataacagtgtgagaacttacacagaggcagaaattc 24561
Query: 112 gtgctgg 118
|||||||
Sbjct: 24562 gtgctgg 24568
Score = 67.9 bits (34), Expect = 2e-07
Identities = 109/134 (81%)
Strand = Plus / Plus
Query: 2675 accttcaggcagaagttcggtcagcggctggccgccgtggggcagtacctggagcagagg 2734
||||| ||| || |||| |||||||| ||||| || | || ||||| |||||||||| |
Sbjct: 29711 acctttaggaagcagtttggtcagcgactggctgcgattggccagtatctggagcagaag 29770
Query: 2735 ttcgggagcgcccaggacgtggagggctgcatggtcggggaagacatctacatagtgcag 2794
|||||||| || ||||| ||||| || ||| |||| ||| |||| || | ||||||||
Sbjct: 29771 ttcgggagtgcacaggatgtggaaggttgcctggttgggaaagatatttttatagtgcaa 29830
Query: 2795 agcaggccacagcc 2808
||||||||||||||
Sbjct: 29831 agcaggccacagcc 29844
Score = 65.9 bits (33), Expect = 9e-07
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1427 gttgtatttgtaacttgtgaagatgatgacaaaattgcagatatgaggttgcttgaggga 1486
||||||||||||||||||||| ||||||||| | || ||||| || ||||||||||||
Sbjct: 26189 gttgtatttgtaacttgtgaatatgatgacacagttacagatgtgtatttgcttgaggga 26248
Query: 1487 aaacatgtcaggt 1499
||| || ||||||
Sbjct: 26249 aaatatatcaggt 26261
Score = 63.9 bits (32), Expect = 3e-06
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 aagagtattctgaagcacttctttctgtattccctgaaaa 40
||||||| |||||||||||||||||| |||||||||||||
Sbjct: 22984 aagagtactctgaagcacttctttctatattccctgaaaa 23023
Score = 58.0 bits (29), Expect = 2e-04
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 2397 agccagagctatccttcgtgctccacacggtcagcccctcggaccacgacaccagggtcg 2456
||||||| || ||||||||||| || || || ||||| | ||||| ||| ||| ||| |
Sbjct: 29433 agccagatctctccttcgtgcttcatactgtttgccccgctgaccatgaccccaaggttg 29492
Query: 2457 tcgaggctgaggttgccccggggctgggcgagacccttgccgctggcacccgcggcaccc 2516
|| |||||||||| ||||| |||||||| || || ||||| | || ||||| |||||||
Sbjct: 29493 tccaggctgaggtcgcccctgggctgggtgaaacgcttgcttcaggaacccgtggcaccc 29552
Query: 2517 cgtgg 2521
|||||
Sbjct: 29553 cgtgg 29557
Score = 48.1 bits (24), Expect = 0.21
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 1823 gagcttgcagaagcatcagttgaatcatctggtgctaaagctaaagcttgtggaactctt 1882
|||||| ||||||| ||||| |||||| ||||||| |||||| || || ||||||||
Sbjct: 28354 gagctttcagaagcttcagtggaatcagctggtgcaaaagctgctgcatgcagaactctt 28413
Query: 1883 tctgtgctggcctcactgtcaaataaag 1910
||||| || || ||| |||| |||||||
Sbjct: 28414 tctgttcttgcttcattgtctaataaag 28441
Score = 48.1 bits (24), Expect = 0.21
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 2144 aaaacaatcttccctcaggatggccggcttatcgtcaggtccagcgctaatgtggaggac 2203
|||| ||||||||| ||||||| |||| | || || || || || ||||||||||||||
Sbjct: 29180 aaaagaatcttcccacaggatgtccggttgattgttagatctagtgctaatgtggaggat 29239
Query: 2204 ctggccgggatgtcagctgc 2223
|||| || |||||||||||
Sbjct: 29240 ttggctggtatgtcagctgc 29259
>emb|AL355392.7 | Human DNA sequence from clone RP5-1187J4 on chromosome 20q11.1-11.23
Contains the gene for a novel protein similar to mouse von
Ebner salivary gland protein, a novel pseudogene, the gene
for a novel protein similar to rat RYF3, the CDK5RAP1 gene
for CDK5 regulatory subunit associated protein 1, the
SNTA1 gene for alpha syntrophin (dystrophin-associated
protein A1, 59kD, acidic component) and two CpG islands,
complete sequence
Length = 159440
Score = 44.1 bits (22), Expect = 3.2
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2928 tgattctaaataatgttttgaa 2949
||||||||||||||||||||||
Sbjct: 85823 tgattctaaataatgttttgaa 85802
>gb|AC000114.1 |HSAC000114 Human PAC clone DJ527C21 from Xq23, complete sequence
Length = 172151
Score = 44.1 bits (22), Expect = 3.2
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1541 caagaatttgattgaaggtgac 1562
||||||||||||||||||||||
Sbjct: 29078 caagaatttgattgaaggtgac 29099
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 636,814,943
Number of extensions: 34452363
Number of successful extensions: 179266
Number of sequences better than 10.0: 25
Number of HSP's gapped: 179266
Number of HSP's successfully gapped: 64
Length of query: 3338
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3314
Effective length of database: 18,499,340,271
Effective search space: 61306813658094
Effective search space used: 61306813658094
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)