ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 62 1e-05
2gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequ... 52 0.013
3emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chrom... 52 0.013
4gb|DQ257594.1| Hordeum vulgare subsp. vulgare clone 33-23A-RB fl... 48 0.20
5gb|DQ175932.1| Hordeum vulgare subsp. vulgare clone 33-25A-RB fl... 48 0.20
6gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 m... 48 0.20
7gb|AC158121.12| Mus musculus chromosome 5, clone RP23-440H19, co... 46 0.78
8gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, com... 46 0.78
9gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 46 0.78
10gb|AC108202.3| Homo sapiens BAC clone RP11-20M7 from 4, complete... 46 0.78
11dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone... 46 0.78
12ref|XM_001144203.1| PREDICTED: Pan troglodytes hypothetical prot... 44 3.1
13emb|CR759921.10| Zebrafish DNA sequence from clone DKEY-277D23 i... 44 3.1
14gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Can... 44 3.1
15gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene,... 44 3.1
16gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 44 3.1
17gb|AC158914.4| Mus musculus chromosome 5, clone RP24-249F11, com... 44 3.1
18gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 44 3.1
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 3.1
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 3.1
21gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, comple... 44 3.1
22emb|AJ459252.1|TAE459252 Triticum aestivum TAA1b gene for fatty ... 44 3.1
23gb|AC113464.17| Mus musculus chromosome 8, clone RP23-183P1, com... 44 3.1
24emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 44 3.1
25gb|AC004389.1|AC004389 Homo Sapiens Chromosome X clone bWXD75, c... 44 3.1
26emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chro... 44 3.1 
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425
 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 80/95 (84%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                          
Query: 3001   tggatccaaggtacaag-atatgatctgttttaattgtagttggcggagtcactatgttg 3059
              ||||||||||||||||| | |||||||| ||||| ||||||||||   | ||||| ||||
Sbjct: 170703 tggatccaaggtacaaggacatgatctgctttaactgtagttggcctgggcactacgttg 170762

                                                 
Query: 3060   gtaattgtgttgaaccgaaaaagtgtttcatctgt 3094
              | || ||  |||| || ||||||||||||||||||
Sbjct: 170763 gcaactgcattgagcccaaaaagtgtttcatctgt 170797
to top
>gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequence
          Length = 152010

 Score = 52.0 bits (26), Expect = 0.013
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 645   ggatggcggcgtcttgcccgcgtggtttgctgaggtgg 682
             |||||||||| ||||  |||||||||||||||||||||
Sbjct: 74557 ggatggcggcatcttcgccgcgtggtttgctgaggtgg 74520
to top
>emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chromosome 1, complete
             sequence
          Length = 184469

 Score = 52.0 bits (26), Expect = 0.013
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 827   ttctttatcatttcagatttttaaattagt 856
             |||||||| |||||||||||||||||||||
Sbjct: 61635 ttctttatgatttcagatttttaaattagt 61664



 Score = 52.0 bits (26), Expect = 0.013
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 1490  ttctttatcatttcagatttttaaattagt 1519
             |||||||| |||||||||||||||||||||
Sbjct: 61635 ttctttatgatttcagatttttaaattagt 61664
to top
>gb|DQ257594.1| Hordeum vulgare subsp. vulgare clone 33-23A-RB flanking T-DNA
           insertion sequence
          Length = 843

 Score = 48.1 bits (24), Expect = 0.20
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 148 gctgatgcatgcatgcatgcatgg 171
           ||||||||||||||||||||||||
Sbjct: 631 gctgatgcatgcatgcatgcatgg 608
to top
>gb|DQ175932.1| Hordeum vulgare subsp. vulgare clone 33-25A-RB flanking T-DNA
           insertion sequence
          Length = 843

 Score = 48.1 bits (24), Expect = 0.20
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 148 gctgatgcatgcatgcatgcatgg 171
           ||||||||||||||||||||||||
Sbjct: 631 gctgatgcatgcatgcatgcatgg 608
to top
>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence
          Length = 139877

 Score = 48.1 bits (24), Expect = 0.20
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 792    ttaaaatatattagccatccttat 815
              ||||||||||||||||||||||||
Sbjct: 124422 ttaaaatatattagccatccttat 124445



 Score = 48.1 bits (24), Expect = 0.20
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 1455   ttaaaatatattagccatccttat 1478
              ||||||||||||||||||||||||
Sbjct: 124422 ttaaaatatattagccatccttat 124445
to top
>gb|AC158121.12| Mus musculus chromosome 5, clone RP23-440H19, complete sequence
          Length = 202895

 Score = 46.1 bits (23), Expect = 0.78
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 1765  agaaatagaagagtaataattat 1787
             |||||||||||||||||||||||
Sbjct: 47011 agaaatagaagagtaataattat 47033
to top
>gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, complete sequence
          Length = 219488

 Score = 46.1 bits (23), Expect = 0.78
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1765  agaaatagaagagtaataattat 1787
             |||||||||||||||||||||||
Sbjct: 11668 agaaatagaagagtaataattat 11646
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 46.1 bits (23), Expect = 0.78
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 978   ctctactattaaaggggatctgcagtcgtgatggttcga 1016
             ||||||||||||| ||||||||  |||||| ||||||||
Sbjct: 39544 ctctactattaaacgggatctgtggtcgtgctggttcga 39582
to top
>gb|AC108202.3| Homo sapiens BAC clone RP11-20M7 from 4, complete sequence
          Length = 154274

 Score = 46.1 bits (23), Expect = 0.78
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1492  ctttatcatttcagatttttaaattag 1518
             ||||||||||||||||||| |||||||
Sbjct: 83591 ctttatcatttcagattttaaaattag 83565



 Score = 46.1 bits (23), Expect = 0.78
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 829   ctttatcatttcagatttttaaattag 855
             ||||||||||||||||||| |||||||
Sbjct: 83591 ctttatcatttcagattttaaaattag 83565
to top
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216,
             complete sequence
          Length = 95667

 Score = 46.1 bits (23), Expect = 0.78
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1794  ctaagagcatctccaatacaagg 1816
             |||||||||||||||||||||||
Sbjct: 65561 ctaagagcatctccaatacaagg 65539
to top
>ref|XM_001144203.1| PREDICTED: Pan troglodytes hypothetical protein LOC741551
           (LOC741551), mRNA
          Length = 1112

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 306 tgtgatcctggctgtggctgtgcagt 331
           |||| |||||||||||||||||||||
Sbjct: 581 tgtgttcctggctgtggctgtgcagt 606
to top
>emb|CR759921.10| Zebrafish DNA sequence from clone DKEY-277D23 in linkage group 25,
              complete sequence
          Length = 170745

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 149    ctgatgcatgcatgcatgcatg 170
              ||||||||||||||||||||||
Sbjct: 143720 ctgatgcatgcatgcatgcatg 143699
to top
>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 211343

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 459   ctgtgctctccttccctctcct 480
             ||||||||||||||||||||||
Sbjct: 52610 ctgtgctctccttccctctcct 52589
to top
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed
             globulin (Glo-2) gene, complete cds; HMW-glutenin
             (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and
             HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds
          Length = 102842

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 645   ggatggcggcgtcttgcccgcgtggtttgctgaggtgg 682
             |||||||||| | ||  |||||||||||||||||||||
Sbjct: 54595 ggatggcggcattttcgccgcgtggtttgctgaggtgg 54558
to top
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
              sequence
          Length = 164705

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 152    atgcatgcatgcatgcatggct 173
              ||||||||||||||||||||||
Sbjct: 153650 atgcatgcatgcatgcatggct 153671
to top
>gb|AC158914.4| Mus musculus chromosome 5, clone RP24-249F11, complete sequence
          Length = 155216

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 149    ctgatgcatgcatgcatgcatg 170
              ||||||||||||||||||||||
Sbjct: 117405 ctgatgcatgcatgcatgcatg 117384
to top
>gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-16i24, complete
             sequence
          Length = 123655

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1079  accagccaataaaccagttgat 1100
             ||||||||||||||||||||||
Sbjct: 18958 accagccaataaaccagttgat 18979
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 150      tgatgcatgcatgcatgcatgg 171
                ||||||||||||||||||||||
Sbjct: 35252063 tgatgcatgcatgcatgcatgg 35252042
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 152      atgcatgcatgcatgcatggct 173
                ||||||||||||||||||||||
Sbjct: 15342410 atgcatgcatgcatgcatggct 15342389
to top
>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence
          Length = 198961

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 306    tgtgatcctggctgtggctgtgcagt 331
              |||| |||||||||||||||||||||
Sbjct: 107446 tgtgttcctggctgtggctgtgcagt 107471
to top
>emb|AJ459252.1|TAE459252 Triticum aestivum TAA1b gene for fatty acyl coA reductase
          Length = 4308

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 152  atgcatgcatgcatgcatggct 173
            ||||||||||||||||||||||
Sbjct: 1494 atgcatgcatgcatgcatggct 1515
to top
>gb|AC113464.17| Mus musculus chromosome 8, clone RP23-183P1, complete sequence
          Length = 191444

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 150   tgatgcatgcatgcatgcatgg 171
             ||||||||||||||||||||||
Sbjct: 59833 tgatgcatgcatgcatgcatgg 59854
to top
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 150   tgatgcatgcatgcatgcatgg 171
             ||||||||||||||||||||||
Sbjct: 47908 tgatgcatgcatgcatgcatgg 47887
to top
>gb|AC004389.1|AC004389 Homo Sapiens Chromosome X clone bWXD75, complete sequence
          Length = 89673

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1184  tgaaattttttaaaaagaagca 1205
             ||||||||||||||||||||||
Sbjct: 35944 tgaaattttttaaaaagaagca 35965
to top
>emb|AL672005.7| Mouse DNA sequence from clone RP23-401A9 on chromosome X, complete
             sequence
          Length = 123180

 Score = 44.1 bits (22), Expect = 3.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 833   atcatttcagatttttaaattagttg 858
             ||||||||||||||||||||| ||||
Sbjct: 40743 atcatttcagatttttaaatttgttg 40768



 Score = 44.1 bits (22), Expect = 3.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1496  atcatttcagatttttaaattagttg 1521
             ||||||||||||||||||||| ||||
Sbjct: 40743 atcatttcagatttttaaatttgttg 40768


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 570,389,263
Number of extensions: 32770738
Number of successful extensions: 217897
Number of sequences better than 10.0: 26
Number of HSP's gapped: 217881
Number of HSP's successfully gapped: 30
Length of query: 3160
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 3137
Effective length of database: 18,503,978,556
Effective search space: 58046980730172
Effective search space used: 58046980730172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
to top