Clone Name | FLbaf98j18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_679665.1| PREDICTED: Danio rerio similar to SHC (Src homology 2 domain containing) transforming protein 1 isoform p66Shc, transcript variant 1 (LOC563639), mRNA Length = 1799 Score = 44.1 bits (22), Expect = 0.68 Identities = 25/26 (96%) Strand = Plus / Minus Query: 386 gaggaagaagaccaggaggagaagag 411 |||||||||||| ||||||||||||| Sbjct: 735 gaggaagaagacgaggaggagaagag 710
>emb|CT030650.6| Mouse DNA sequence from clone RP23-167K8 on chromosome 12, complete sequence Length = 90739 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 77847 cccttccccctccttcccttg 77827
>emb|CT030146.7| Mouse DNA sequence from clone RP24-150F7 on chromosome 12, complete sequence Length = 79717 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 39317 cccttccccctccttcccttg 39337
>emb|CT030170.10| Mouse DNA sequence from clone RP23-45K23 on chromosome 12, complete sequence Length = 130202 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 31804 cccttccccctccttcccttg 31824
>gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosome 12, complete sequence Length = 196418 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 99112 cccttccccctccttcccttg 99092
>gb|AC163041.3| Mus musculus BAC clone RP23-32K16 from chromosome 12, complete sequence Length = 254666 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 82382 cccttccccctccttcccttg 82362
>gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome 12, complete sequence Length = 217016 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 211913 cccttccccctccttcccttg 211893
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 cctctgctctccatcgcgagg 389 ||||||||||||||||||||| Sbjct: 700856 cctctgctctccatcgcgagg 700876
>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence Length = 177302 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 tacttcaaaaggctatatttc 677 ||||||||||||||||||||| Sbjct: 161406 tacttcaaaaggctatatttc 161426
>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence Length = 199958 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 39375 cccttccccctccttcccttg 39355 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 149665 cccttccccctccttcccttg 149645
>gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome 16, complete sequence Length = 191975 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 576 aaacgtaaacttcccagtgtg 596 ||||||||||||||||||||| Sbjct: 141993 aaacgtaaacttcccagtgtg 142013
>gb|AC153794.6| Mus musculus BAC clone RP23-128I24 from chromosome 12, complete sequence Length = 208105 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 1288 cccttccccctccttcccttg 1308
>gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome 12, complete sequence Length = 224632 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 128118 cccttccccctccttcccttg 128138
>gb|AC131649.2| Homo sapiens chromosome 16 clone RP11-609N14, complete sequence Length = 182518 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cccctccttcccttgggcata 128 ||||||||||||||||||||| Sbjct: 65605 cccctccttcccttgggcata 65625
>gb|AC124601.5| Mus musculus BAC clone RP23-27M3 from chromosome 12, complete sequence Length = 237876 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 26766 cccttccccctccttcccttg 26786
>gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, complete sequence Length = 196580 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 aaacgtaaacttcccagtgtg 596 ||||||||||||||||||||| Sbjct: 164321 aaacgtaaacttcccagtgtg 164301
>gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosome 12, complete sequence Length = 227048 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 159589 cccttccccctccttcccttg 159609
>gb|AC153663.6| Mus musculus BAC clone RP23-12J8 from chromosome 12, complete sequence Length = 248166 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 58893 cccttccccctccttcccttg 58913 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 153056 cccttccccctccttcccttg 153076
>gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome 12, complete sequence Length = 216041 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 158632 cccttccccctccttcccttg 158612
>dbj|AK023492.1| Homo sapiens cDNA FLJ13430 fis, clone PLACE1002514 Length = 2210 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 tcgctgggaacccacagagctgttg 159 ||||||||||||||| ||||||||| Sbjct: 1125 tcgctgggaacccactgagctgttg 1101
>gb|AY124705.1| Xenopus laevis shaker-like potassium channel Kv1.4 mRNA, complete cds Length = 2094 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 386 gaggaagaagaccaggaggagaaga 410 ||||||||||| ||||||||||||| Sbjct: 317 gaggaagaagagcaggaggagaaga 341
>emb|CR696067.2|CNS0G01B Tetraodon nigroviridis full-length cDNA Length = 1145 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 gaggaagaagaccaggaggag 406 ||||||||||||||||||||| Sbjct: 100 gaggaagaagaccaggaggag 120
>emb|CR675364.2|CNS0FK2Y Tetraodon nigroviridis full-length cDNA Length = 1126 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 gaggaagaagaccaggaggag 406 ||||||||||||||||||||| Sbjct: 77 gaggaagaagaccaggaggag 97
>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence Length = 234665 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 386 gaggaagaagaccaggaggagaaga 410 |||||||||||| |||||||||||| Sbjct: 60517 gaggaagaagacgaggaggagaaga 60493
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 cctgttggtgcggcacagcac 297 ||||||||||||||||||||| Sbjct: 1794237 cctgttggtgcggcacagcac 1794257
>gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, complete sequence Length = 159945 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 tacttcaaaaggctatatttc 677 ||||||||||||||||||||| Sbjct: 156579 tacttcaaaaggctatatttc 156559
>gb|AF323750.1|AF323750 Xenopus laevis Kv1.4 potassium channel mRNA, complete cds Length = 3273 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 386 gaggaagaagaccaggaggagaaga 410 ||||||||||| ||||||||||||| Sbjct: 1076 gaggaagaagagcaggaggagaaga 1100
>gb|AC132472.3| Mus musculus BAC clone RP23-113B13 from chromosome 12, complete sequence Length = 214333 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 111906 cccttccccctccttcccttg 111926
>gb|AC114729.4| Homo sapiens BAC clone RP13-916J2 from 2, complete sequence Length = 46894 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 tcgctgggaacccacagagctgttg 159 ||||||||||||||| ||||||||| Sbjct: 41830 tcgctgggaacccactgagctgttg 41806
>gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224716 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 tacttcaaaaggctatatttc 677 ||||||||||||||||||||| Sbjct: 190656 tacttcaaaaggctatatttc 190636
>gb|AC158366.5| Mus musculus BAC clone RP23-33N12 from chromosome 12, complete sequence Length = 212215 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 58118 cccttccccctccttcccttg 58098
>gb|AC134254.3| Mus musculus BAC clone RP23-474M18 from 12, complete sequence Length = 191070 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 166932 cccttccccctccttcccttg 166912
>gb|AC132587.5| Mus musculus BAC clone RP24-372N16 from 12, complete sequence Length = 181443 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 135412 cccttccccctccttcccttg 135432
>emb|CT030242.6| Mouse DNA sequence from clone RP24-66D20 on chromosome 12, complete sequence Length = 193557 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 38190 cccttccccctccttcccttg 38210
>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence Length = 218340 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 81146 cccttccccctccttcccttg 81126
>gb|AC130824.4| Mus musculus BAC clone RP23-349B5 from 12, complete sequence Length = 178133 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 43148 cccttccccctccttcccttg 43168 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 68146 cccttccccctccttcccttg 68166
>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence Length = 189692 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 165281 cccttccccctccttcccttg 165261
>gb|AC164424.5| Mus musculus BAC clone RP23-151N21 from chromosome 12, complete sequence Length = 183953 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccttccccctccttcccttg 122 ||||||||||||||||||||| Sbjct: 83251 cccttccccctccttcccttg 83271 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 102,594,157 Number of extensions: 5297598 Number of successful extensions: 107087 Number of sequences better than 10.0: 38 Number of HSP's gapped: 107087 Number of HSP's successfully gapped: 41 Length of query: 721 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 699 Effective length of database: 18,508,616,841 Effective search space: 12937523171859 Effective search space used: 12937523171859 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)