ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf98j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_679665.1| PREDICTED: Danio rerio similar to SHC (Src homo... 44 0.68
2emb|CT030650.6| Mouse DNA sequence from clone RP23-167K8 on chro... 42 2.7
3emb|CT030146.7| Mouse DNA sequence from clone RP24-150F7 on chro... 42 2.7
4emb|CT030170.10| Mouse DNA sequence from clone RP23-45K23 on chr... 42 2.7
5gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosom... 42 2.7
6gb|AC163041.3| Mus musculus BAC clone RP23-32K16 from chromosome... 42 2.7
7gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome... 42 2.7
8gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 2.7
9gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome... 42 2.7
10gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome... 42 2.7
11gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome... 42 2.7
12gb|AC153794.6| Mus musculus BAC clone RP23-128I24 from chromosom... 42 2.7
13gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome... 42 2.7
14gb|AC131649.2| Homo sapiens chromosome 16 clone RP11-609N14, com... 42 2.7
15gb|AC124601.5| Mus musculus BAC clone RP23-27M3 from chromosome ... 42 2.7
16gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, compl... 42 2.7
17gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosom... 42 2.7
18gb|AC153663.6| Mus musculus BAC clone RP23-12J8 from chromosome ... 42 2.7
19gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome... 42 2.7
20dbj|AK023492.1| Homo sapiens cDNA FLJ13430 fis, clone PLACE1002514 42 2.7
21gb|AY124705.1| Xenopus laevis shaker-like potassium channel Kv1.... 42 2.7
22emb|CR696067.2|CNS0G01B Tetraodon nigroviridis full-length cDNA 42 2.7
23emb|CR675364.2|CNS0FK2Y Tetraodon nigroviridis full-length cDNA 42 2.7
24gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome... 42 2.7
25gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 42 2.7
26gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, co... 42 2.7
27gb|AF323750.1|AF323750 Xenopus laevis Kv1.4 potassium channel mR... 42 2.7
28gb|AC132472.3| Mus musculus BAC clone RP23-113B13 from chromosom... 42 2.7
29gb|AC114729.4| Homo sapiens BAC clone RP13-916J2 from 2, complet... 42 2.7
30gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Ho... 42 2.7
31gb|AC158366.5| Mus musculus BAC clone RP23-33N12 from chromosome... 42 2.7
32gb|AC134254.3| Mus musculus BAC clone RP23-474M18 from 12, compl... 42 2.7
33gb|AC132587.5| Mus musculus BAC clone RP24-372N16 from 12, compl... 42 2.7
34emb|CT030242.6| Mouse DNA sequence from clone RP24-66D20 on chro... 42 2.7
35gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complet... 42 2.7
36gb|AC130824.4| Mus musculus BAC clone RP23-349B5 from 12, comple... 42 2.7
37gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, compl... 42 2.7
38gb|AC164424.5| Mus musculus BAC clone RP23-151N21 from chromosom... 42 2.7

>ref|XM_679665.1| PREDICTED: Danio rerio similar to SHC (Src homology 2 domain
           containing) transforming protein 1 isoform p66Shc,
           transcript variant 1 (LOC563639), mRNA
          Length = 1799
 Score = 44.1 bits (22), Expect = 0.68
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 386 gaggaagaagaccaggaggagaagag 411
           |||||||||||| |||||||||||||
Sbjct: 735 gaggaagaagacgaggaggagaagag 710



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>emb|CT030650.6| Mouse DNA sequence from clone RP23-167K8 on chromosome 12, complete
             sequence
          Length = 90739

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 77847 cccttccccctccttcccttg 77827



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>emb|CT030146.7| Mouse DNA sequence from clone RP24-150F7 on chromosome 12, complete
             sequence
          Length = 79717

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 39317 cccttccccctccttcccttg 39337



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>emb|CT030170.10| Mouse DNA sequence from clone RP23-45K23 on chromosome 12, complete
             sequence
          Length = 130202

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 31804 cccttccccctccttcccttg 31824



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>gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosome 12, complete
             sequence
          Length = 196418

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 99112 cccttccccctccttcccttg 99092



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>gb|AC163041.3| Mus musculus BAC clone RP23-32K16 from chromosome 12, complete sequence
          Length = 254666

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 82382 cccttccccctccttcccttg 82362



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>gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome 12, complete sequence
          Length = 217016

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 211913 cccttccccctccttcccttg 211893



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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 369    cctctgctctccatcgcgagg 389
              |||||||||||||||||||||
Sbjct: 700856 cctctgctctccatcgcgagg 700876



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>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence
          Length = 177302

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 657    tacttcaaaaggctatatttc 677
              |||||||||||||||||||||
Sbjct: 161406 tacttcaaaaggctatatttc 161426



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>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence
          Length = 199958

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 39375 cccttccccctccttcccttg 39355



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 149665 cccttccccctccttcccttg 149645



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>gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome 16, complete sequence
          Length = 191975

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 576    aaacgtaaacttcccagtgtg 596
              |||||||||||||||||||||
Sbjct: 141993 aaacgtaaacttcccagtgtg 142013



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>gb|AC153794.6| Mus musculus BAC clone RP23-128I24 from chromosome 12, complete
            sequence
          Length = 208105

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 102  cccttccccctccttcccttg 122
            |||||||||||||||||||||
Sbjct: 1288 cccttccccctccttcccttg 1308



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>gb|AC124739.2| Mus musculus BAC clone RP23-344H4 from chromosome 12, complete sequence
          Length = 224632

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 128118 cccttccccctccttcccttg 128138



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>gb|AC131649.2| Homo sapiens chromosome 16 clone RP11-609N14, complete sequence
          Length = 182518

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   cccctccttcccttgggcata 128
             |||||||||||||||||||||
Sbjct: 65605 cccctccttcccttgggcata 65625



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>gb|AC124601.5| Mus musculus BAC clone RP23-27M3 from chromosome 12, complete sequence
          Length = 237876

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 26766 cccttccccctccttcccttg 26786



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>gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, complete sequence
          Length = 196580

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 576    aaacgtaaacttcccagtgtg 596
              |||||||||||||||||||||
Sbjct: 164321 aaacgtaaacttcccagtgtg 164301



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>gb|AC165350.3| Mus musculus BAC clone RP23-249A17 from chromosome 12, complete sequence
          Length = 227048

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 159589 cccttccccctccttcccttg 159609



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>gb|AC153663.6| Mus musculus BAC clone RP23-12J8 from chromosome 12, complete sequence
          Length = 248166

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 58893 cccttccccctccttcccttg 58913



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 153056 cccttccccctccttcccttg 153076



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>gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome 12, complete sequence
          Length = 216041

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 158632 cccttccccctccttcccttg 158612



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>dbj|AK023492.1| Homo sapiens cDNA FLJ13430 fis, clone PLACE1002514
          Length = 2210

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 135  tcgctgggaacccacagagctgttg 159
            ||||||||||||||| |||||||||
Sbjct: 1125 tcgctgggaacccactgagctgttg 1101



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>gb|AY124705.1| Xenopus laevis shaker-like potassium channel Kv1.4 mRNA, complete
           cds
          Length = 2094

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 386 gaggaagaagaccaggaggagaaga 410
           ||||||||||| |||||||||||||
Sbjct: 317 gaggaagaagagcaggaggagaaga 341



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>emb|CR696067.2|CNS0G01B Tetraodon nigroviridis full-length cDNA
          Length = 1145

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 386 gaggaagaagaccaggaggag 406
           |||||||||||||||||||||
Sbjct: 100 gaggaagaagaccaggaggag 120



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>emb|CR675364.2|CNS0FK2Y Tetraodon nigroviridis full-length cDNA
          Length = 1126

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 386 gaggaagaagaccaggaggag 406
           |||||||||||||||||||||
Sbjct: 77  gaggaagaagaccaggaggag 97



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>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence
          Length = 234665

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 386   gaggaagaagaccaggaggagaaga 410
             |||||||||||| ||||||||||||
Sbjct: 60517 gaggaagaagacgaggaggagaaga 60493



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 277     cctgttggtgcggcacagcac 297
               |||||||||||||||||||||
Sbjct: 1794237 cctgttggtgcggcacagcac 1794257



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>gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, complete sequence
          Length = 159945

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 657    tacttcaaaaggctatatttc 677
              |||||||||||||||||||||
Sbjct: 156579 tacttcaaaaggctatatttc 156559



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>gb|AF323750.1|AF323750 Xenopus laevis Kv1.4 potassium channel mRNA, complete cds
          Length = 3273

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 386  gaggaagaagaccaggaggagaaga 410
            ||||||||||| |||||||||||||
Sbjct: 1076 gaggaagaagagcaggaggagaaga 1100



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>gb|AC132472.3| Mus musculus BAC clone RP23-113B13 from chromosome 12, complete sequence
          Length = 214333

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 111906 cccttccccctccttcccttg 111926



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>gb|AC114729.4| Homo sapiens BAC clone RP13-916J2 from 2, complete sequence
          Length = 46894

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 135   tcgctgggaacccacagagctgttg 159
             ||||||||||||||| |||||||||
Sbjct: 41830 tcgctgggaacccactgagctgttg 41806



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>gb|AC130103.4| Rattus norvegicus  BAC CH230-41L20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224716

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 657    tacttcaaaaggctatatttc 677
              |||||||||||||||||||||
Sbjct: 190656 tacttcaaaaggctatatttc 190636



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>gb|AC158366.5| Mus musculus BAC clone RP23-33N12 from chromosome 12, complete sequence
          Length = 212215

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 58118 cccttccccctccttcccttg 58098



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>gb|AC134254.3| Mus musculus BAC clone RP23-474M18 from 12, complete sequence
          Length = 191070

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 166932 cccttccccctccttcccttg 166912



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>gb|AC132587.5| Mus musculus BAC clone RP24-372N16 from 12, complete sequence
          Length = 181443

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 135412 cccttccccctccttcccttg 135432



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>emb|CT030242.6| Mouse DNA sequence from clone RP24-66D20 on chromosome 12, complete
             sequence
          Length = 193557

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 38190 cccttccccctccttcccttg 38210



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>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence
          Length = 218340

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 81146 cccttccccctccttcccttg 81126



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>gb|AC130824.4| Mus musculus BAC clone RP23-349B5 from 12, complete sequence
          Length = 178133

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 43148 cccttccccctccttcccttg 43168



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 68146 cccttccccctccttcccttg 68166



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>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence
          Length = 189692

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cccttccccctccttcccttg 122
              |||||||||||||||||||||
Sbjct: 165281 cccttccccctccttcccttg 165261



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>gb|AC164424.5| Mus musculus BAC clone RP23-151N21 from chromosome 12, complete
             sequence
          Length = 183953

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cccttccccctccttcccttg 122
             |||||||||||||||||||||
Sbjct: 83251 cccttccccctccttcccttg 83271


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 102,594,157
Number of extensions: 5297598
Number of successful extensions: 107087
Number of sequences better than 10.0: 38
Number of HSP's gapped: 107087
Number of HSP's successfully gapped: 41
Length of query: 721
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 699
Effective length of database: 18,508,616,841
Effective search space: 12937523171859
Effective search space used: 12937523171859
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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