ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf96f18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829101.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043F13, full insert sequence Length = 774 Score = 214 bits (108), Expect = 3e-52 Identities = 264/316 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 224 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 283 Query: 278 cggcgccgggaccggcgggacccaccggctccgccatcgcgcagtctctggagaccaaga 337 ||||||| || |||||||| |||| | ||| || | |||| | ||||||||||||| Sbjct: 284 cggcgcccgggccggcggggtccacggattcccccgccatgcaggcgctggagaccaaga 343 Query: 338 tcaaggagcagctggaggcggaccatgtcaccgtcgtcgatgcctcaggggatggccgcc 397 ||||||||||||||||||||||| |||||||||||||| | || || || ||||||| Sbjct: 344 tcaaggagcagctggaggcggacacggtcaccgtcgtcgacacatctggcgacggccgcc 403 Query: 398 acgtctgcatagacgtggtttcgaaggcgtttgaggggaaatccgctgtgaacaggcaga 457 | ||||||||||| || ||||| |||| || || ||||| || || || || |||||| Sbjct: 404 atgtctgcatagatgtagtttccaaggtattcgaagggaagtctgccgtaaatcggcaga 463 Query: 458 gaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtggaccaaa 517 ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 464 gaatggtttacaaggctatatgggaggagctccaaagcaccgtgcatgctgtggaccaaa 523 Query: 518 tgaccaccaagacgcc 533 |||| ||||||||||| Sbjct: 524 tgacgaccaagacgcc 539
>ref|NM_001064195.1| Oryza sativa (japonica cultivar-group) Os06g0484600 (Os06g0484600) mRNA, partial cds Length = 727 Score = 214 bits (108), Expect = 3e-52 Identities = 264/316 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 232 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 291 Query: 278 cggcgccgggaccggcgggacccaccggctccgccatcgcgcagtctctggagaccaaga 337 ||||||| || |||||||| |||| | ||| || | |||| | ||||||||||||| Sbjct: 292 cggcgcccgggccggcggggtccacggattcccccgccatgcaggcgctggagaccaaga 351 Query: 338 tcaaggagcagctggaggcggaccatgtcaccgtcgtcgatgcctcaggggatggccgcc 397 ||||||||||||||||||||||| |||||||||||||| | || || || ||||||| Sbjct: 352 tcaaggagcagctggaggcggacacggtcaccgtcgtcgacacatctggcgacggccgcc 411 Query: 398 acgtctgcatagacgtggtttcgaaggcgtttgaggggaaatccgctgtgaacaggcaga 457 | ||||||||||| || ||||| |||| || || ||||| || || || || |||||| Sbjct: 412 atgtctgcatagatgtagtttccaaggtattcgaagggaagtctgccgtaaatcggcaga 471 Query: 458 gaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtggaccaaa 517 ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 472 gaatggtttacaaggctatatgggaggagctccaaagcaccgtgcatgctgtggaccaaa 531 Query: 518 tgaccaccaagacgcc 533 |||| ||||||||||| Sbjct: 532 tgacgaccaagacgcc 547
>dbj|AK062871.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C06, full insert sequence Length = 727 Score = 214 bits (108), Expect = 3e-52 Identities = 264/316 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 232 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 291 Query: 278 cggcgccgggaccggcgggacccaccggctccgccatcgcgcagtctctggagaccaaga 337 ||||||| || |||||||| |||| | ||| || | |||| | ||||||||||||| Sbjct: 292 cggcgcccgggccggcggggtccacggattcccccgccatgcaggcgctggagaccaaga 351 Query: 338 tcaaggagcagctggaggcggaccatgtcaccgtcgtcgatgcctcaggggatggccgcc 397 ||||||||||||||||||||||| |||||||||||||| | || || || ||||||| Sbjct: 352 tcaaggagcagctggaggcggacacggtcaccgtcgtcgacacatctggcgacggccgcc 411 Query: 398 acgtctgcatagacgtggtttcgaaggcgtttgaggggaaatccgctgtgaacaggcaga 457 | ||||||||||| || ||||| |||| || || ||||| || || || || |||||| Sbjct: 412 atgtctgcatagatgtagtttccaaggtattcgaagggaagtctgccgtaaatcggcaga 471 Query: 458 gaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtggaccaaa 517 ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 472 gaatggtttacaaggctatatgggaggagctccaaagcaccgtgcatgctgtggaccaaa 531 Query: 518 tgaccaccaagacgcc 533 |||| ||||||||||| Sbjct: 532 tgacgaccaagacgcc 547
>gb|BT018056.1| Zea mays clone EL01N0532C10.c mRNA sequence Length = 728 Score = 204 bits (103), Expect = 3e-49 Identities = 196/227 (86%) Strand = Plus / Plus Query: 334 aagatcaaggagcagctggaggcggaccatgtcaccgtcgtcgatgcctcaggggatggc 393 ||||||||||||||||||| |||||| ||||| || || ||| |||| || |||||| Sbjct: 316 aagatcaaggagcagctggttgcggacacagtcacggttgtggatacctctggagatggc 375 Query: 394 cgccacgtctgcatagacgtggtttcgaaggcgtttgaggggaaatccgctgtgaacagg 453 ||||| || |||||||||||| |||| ||||| |||||||| ||||| ||||| |||||| Sbjct: 376 cgccatgtttgcatagacgtgatttccaaggcatttgagggaaaatctgctgtaaacagg 435 Query: 454 cagagaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtggac 513 ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 436 cagagaatggtctacaaggctatatgggaggagcttcagagcactgtgcatgctgtggac 495 Query: 514 caaatgaccaccaagacgcccggtgaggcggctggcaactagtaatc 560 || ||||| ||||| ||||| | ||| || |||| |||| ||||||| Sbjct: 496 cagatgactaccaaaacgcctgatgaagctgctgccaacaagtaatc 542 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Plus Query: 266 cggcctgggcgtcggcgccgggaccggcggg 296 |||||||||| ||||||||||| |||||||| Sbjct: 248 cggcctgggcttcggcgccggggccggcggg 278
>gb|AY109284.1| Zea mays PCO076414 mRNA sequence Length = 532 Score = 184 bits (93), Expect = 3e-43 Identities = 153/173 (88%) Strand = Plus / Plus Query: 334 aagatcaaggagcagctggaggcggaccatgtcaccgtcgtcgatgcctcaggggatggc 393 ||||||||||||||||||||||||||| ||||| || || ||| |||| || |||||| Sbjct: 360 aagatcaaggagcagctggaggcggacacagtcacggttgtggatacctctggagatggc 419 Query: 394 cgccacgtctgcatagacgtggtttcgaaggcgtttgaggggaaatccgctgtgaacagg 453 ||||| || |||||||||||| |||| ||||| |||||||| ||||| ||||| |||||| Sbjct: 420 cgccatgtttgcatagacgtgatttccaaggcatttgagggaaaatctgctgtaaacagg 479 Query: 454 cagagaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgc 506 ||||||||||| ||||||| |||||||||||||||||||||||| |||||||| Sbjct: 480 cagagaatggtctacaaggctatatgggaggagcttcagagcactgtgcatgc 532 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Plus Query: 266 cggcctgggcgtcggcgccgggaccggcggg 296 |||||||||| ||||||||||| |||||||| Sbjct: 292 cggcctgggcttcggcgccggggccggcggg 322
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 131 bits (66), Expect = 4e-27 Identities = 78/82 (95%) Strand = Plus / Plus Query: 452 ggcagagaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtgg 511 ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct: 16294393 ggcagagaatggtttacaaggctatatgggaggagctccaaagcaccgtgcatgctgtgg 16294452 Query: 512 accaaatgaccaccaagacgcc 533 |||||||||| ||||||||||| Sbjct: 16294453 accaaatgacgaccaagacgcc 16294474 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 335 agatcaaggagcagctggaggcggaccatgtcaccgtcgtcga 377 |||||||||||||||||||||||||| |||||||||||||| Sbjct: 16291652 agatcaaggagcagctggaggcggacacggtcaccgtcgtcga 16291694 Score = 54.0 bits (27), Expect = 7e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 16291414 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 16291473 Query: 278 cggcgccgggaccggcggg 296 ||||||| || |||||||| Sbjct: 16291474 cggcgcccgggccggcggg 16291492
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 131 bits (66), Expect = 4e-27 Identities = 78/82 (95%) Strand = Plus / Plus Query: 452 ggcagagaatggtttacaaggttatatgggaggagcttcagagcaccgtgcatgctgtgg 511 ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct: 119285 ggcagagaatggtttacaaggctatatgggaggagctccaaagcaccgtgcatgctgtgg 119344 Query: 512 accaaatgaccaccaagacgcc 533 |||||||||| ||||||||||| Sbjct: 119345 accaaatgacgaccaagacgcc 119366 Score = 61.9 bits (31), Expect = 3e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 335 agatcaaggagcagctggaggcggaccatgtcaccgtcgtcga 377 |||||||||||||||||||||||||| |||||||||||||| Sbjct: 116544 agatcaaggagcagctggaggcggacacggtcaccgtcgtcga 116586 Score = 54.0 bits (27), Expect = 7e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 116306 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 116365 Query: 278 cggcgccgggaccggcggg 296 ||||||| || |||||||| Sbjct: 116366 cggcgcccgggccggcggg 116384
>emb|CT830161.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010B10, full insert sequence Length = 1008 Score = 54.0 bits (27), Expect = 7e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 218 cctggtcccctccccctcttcccggcagcgcccggaccgggggcttctcggcctgggcgt 277 ||||||||||||| |||| | | ||| ||||| ||| | |||| ||| | |||||||||| Sbjct: 232 cctggtcccctcctcctccttcgggcggcgccaggagcagggggttcgctgcctgggcgt 291 Query: 278 cggcgccgggaccggcggg 296 ||||||| || |||||||| Sbjct: 292 cggcgcccgggccggcggg 310
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 48.1 bits (24), Expect = 0.045 Identities = 27/28 (96%) Strand = Plus / Plus Query: 176 ccctatcctcctccccctcctcgtcgtc 203 ||||| |||||||||||||||||||||| Sbjct: 17 ccctagcctcctccccctcctcgtcgtc 44
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 48.1 bits (24), Expect = 0.045 Identities = 27/28 (96%) Strand = Plus / Plus Query: 176 ccctatcctcctccccctcctcgtcgtc 203 ||||| |||||||||||||||||||||| Sbjct: 24856105 ccctagcctcctccccctcctcgtcgtc 24856132
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 48.1 bits (24), Expect = 0.045 Identities = 27/28 (96%) Strand = Plus / Plus Query: 176 ccctatcctcctccccctcctcgtcgtc 203 ||||| |||||||||||||||||||||| Sbjct: 51733 ccctagcctcctccccctcctcgtcgtc 51760
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 48.1 bits (24), Expect = 0.045 Identities = 24/24 (100%) Strand = Plus / Plus Query: 276 gtcggcgccgggaccggcgggacc 299 |||||||||||||||||||||||| Sbjct: 74911 gtcggcgccgggaccggcgggacc 74934
>ref|NM_001074328.1| Oryza sativa (japonica cultivar-group) Os11g0432900 (Os11g0432900) mRNA, complete cds Length = 1734 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgtct 204 ||||||||||||||||||||||| Sbjct: 135 cctcctccccctcctcgtcgtct 157
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 tcctcctccccctcctcgtcgtc 203 ||||||||||||||||||||||| Sbjct: 17222846 tcctcctccccctcctcgtcgtc 17222824
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 182 cctcctccccctcctcgtcgtct 204 ||||||||||||||||||||||| Sbjct: 116941 cctcctccccctcctcgtcgtct 116919
>gb|AC113060.11| Mus musculus chromosome 13, clone RP23-255E18, complete sequence Length = 192264 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Plus Query: 167 ccctctcttccctatcctcctccccctcctc 197 ||||||| ||||| ||||||||||||||||| Sbjct: 90866 ccctctcctccctctcctcctccccctcctc 90896
>gb|AC140799.6| Mus musculus chromosome 15, clone RP24-147N23, complete sequence Length = 162329 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 570 atgggaaaagttcaatttggaac 592 ||||||||||||||||||||||| Sbjct: 27587 atgggaaaagttcaatttggaac 27609
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Plus Query: 171 ctcttccctatcctcctccccctcctc 197 ||||||||| ||||||||||||||||| Sbjct: 68783 ctcttccctctcctcctccccctcctc 68809
>gb|AC122274.4| Mus musculus BAC clone RP23-228J3 from 14, complete sequence Length = 192135 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcctc 197 ||||||||| ||||||||||||||||| Sbjct: 170379 ctcttccctctcctcctccccctcctc 170353
>ref|NM_176244.1| Drosophila melanogaster domino CG9696-RE, transcript variant E (dom), mRNA Length = 8567 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 tcctcctccccctcctcgtcgtc 203 ||||||||||||||||||||||| Sbjct: 6960 tcctcctccccctcctcgtcgtc 6938
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 182 cctcctccccctcctcgtcgtct 204 ||||||||||||||||||||||| Sbjct: 13400588 cctcctccccctcctcgtcgtct 13400566
>gb|AC007175.1|AC007175 Drosophila melanogaster, chromosome 2R, region 57D3-57E2, BAC clones DS01261 and BACR48K03, complete sequence Length = 188633 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 tcctcctccccctcctcgtcgtc 203 ||||||||||||||||||||||| Sbjct: 78693 tcctcctccccctcctcgtcgtc 78671
>gb|AY051813.1| Drosophila melanogaster LD32234 full length cDNA Length = 4283 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 tcctcctccccctcctcgtcgtc 203 ||||||||||||||||||||||| Sbjct: 2618 tcctcctccccctcctcgtcgtc 2596
>gb|AF254373.1|AF254373 Drosophila melanogaster DOMINO B (domino) mRNA, complete cds, alternatively spliced Length = 8560 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 tcctcctccccctcctcgtcgtc 203 ||||||||||||||||||||||| Sbjct: 6960 tcctcctccccctcctcgtcgtc 6938
>dbj|AK069378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012E22, full insert sequence Length = 1734 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgtct 204 ||||||||||||||||||||||| Sbjct: 136 cctcctccccctcctcgtcgtct 158
>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence Length = 244565 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgtc 203 |||||||||||||||||||||| Sbjct: 121383 cctcctccccctcctcgtcgtc 121404
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 44.1 bits (22), Expect = 0.71 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 ctcttccctatcctcctccccctcct 196 ||||||||| |||||||||||||||| Sbjct: 108113 ctcttccctctcctcctccccctcct 108138
>gb|AC122522.4| Mus musculus BAC clone RP24-486D23 from chromosome 5, complete sequence Length = 186083 Score = 44.1 bits (22), Expect = 0.71 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcct 196 ||||||||| |||||||||||||||| Sbjct: 185175 ctcttccctctcctcctccccctcct 185150
>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence Length = 264425 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 182 cctcctccccctcctcgtcgtc 203 |||||||||||||||||||||| Sbjct: 231499 cctcctccccctcctcgtcgtc 231478
>gb|AC117257.4| Mus musculus BAC clone RP24-484F21 from chromosome 17, complete sequence Length = 187399 Score = 44.1 bits (22), Expect = 0.71 Identities = 28/30 (93%) Strand = Plus / Minus Query: 168 cctctcttccctatcctcctccccctcctc 197 ||||||||||| ||||||||||||||||| Sbjct: 111696 cctctcttccccctcctcctccccctcctc 111667
>gb|AC093520.4| Homo sapiens chromosome 16 clone RP11-120K18, complete sequence Length = 168064 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 182 cctcctccccctcctcgtcgtc 203 |||||||||||||||||||||| Sbjct: 110566 cctcctccccctcctcgtcgtc 110545
>gb|AC002401.2| Homo sapiens chromosome 17, clone RP5-875H18, complete sequence Length = 113128 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttccctatcctcctccccctc 194 |||||||||||||||||||||| Sbjct: 31881 cttccctatcctcctccccctc 31860
>emb|AJ325931.1|HSA325931 Homo sapiens genomic sequence surrounding NotI site, clone NL1-CP4C Length = 739 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 cttccctatcctcctccccctc 194 |||||||||||||||||||||| Sbjct: 411 cttccctatcctcctccccctc 390
>ref|XM_001182319.1| PREDICTED: Strongylocentrotus purpuratus similar to KIAA1218 protein (LOC576361), mRNA Length = 3560 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tcctcctccccctcctcgtcg 201 ||||||||||||||||||||| Sbjct: 1722 tcctcctccccctcctcgtcg 1742
>ref|XM_001178587.1| PREDICTED: Strongylocentrotus purpuratus similar to Ran-binding protein 10 (LOC579137), mRNA Length = 1890 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgtctgc 206 |||||||| |||||||||||||||| Sbjct: 1106 cctcctcctcctcctcgtcgtctgc 1130
>ref|XM_776676.2| PREDICTED: Strongylocentrotus purpuratus similar to KIAA1218 protein (LOC576361), mRNA Length = 3560 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tcctcctccccctcctcgtcg 201 ||||||||||||||||||||| Sbjct: 1722 tcctcctccccctcctcgtcg 1742
>ref|XM_779269.2| PREDICTED: Strongylocentrotus purpuratus similar to Ran-binding protein 10 (LOC579137), mRNA Length = 1890 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgtctgc 206 |||||||| |||||||||||||||| Sbjct: 1106 cctcctcctcctcctcgtcgtctgc 1130
>ref|XM_001155566.1| PREDICTED: Pan troglodytes similar to 0910001A06Rik protein, transcript variant 26 (LOC472859), mRNA Length = 2410 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 cctcctccccctcctcgtcgt 202 ||||||||||||||||||||| Sbjct: 25 cctcctccccctcctcgtcgt 45
>gb|AC190524.1| Taeniopygia guttata BAC clone TGMCBa-8H12 from chromosome unknown, complete sequence Length = 142167 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 ggctacacttttcatgtaaac 679 ||||||||||||||||||||| Sbjct: 114963 ggctacacttttcatgtaaac 114983
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 tcggcctgggcgtcggcgccg 285 ||||||||||||||||||||| Sbjct: 6711920 tcggcctgggcgtcggcgccg 6711900
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence Length = 167235 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 167 ccctctcttccctatcctcctccccctcc 195 ||||||||||||| |||| |||||||||| Sbjct: 44106 ccctctcttccctctccttctccccctcc 44078
>gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete sequence Length = 126477 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 169 ctctcttccctatcctcctccccctcctc 197 ||||||||||| ||||||||| ||||||| Sbjct: 83248 ctctcttccctctcctcctcctcctcctc 83220
>gb|AC117570.11| Mus musculus chromosome 9, clone RP23-18M12, complete sequence Length = 238598 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 638 acatgaagacattcttttgta 658 ||||||||||||||||||||| Sbjct: 236280 acatgaagacattcttttgta 236260
>ref|XM_503361.1| Yarrowia lipolytica CLIB122, YALI0E00154g predicted mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 ctatcctcctccccctcctcg 198 ||||||||||||||||||||| Sbjct: 2120 ctatcctcctccccctcctcg 2100
>gb|AC140981.3| Mus musculus chromosome 9 clone RP23-282G22, complete sequence Length = 174329 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 638 acatgaagacattcttttgta 658 ||||||||||||||||||||| Sbjct: 20746 acatgaagacattcttttgta 20726
>gb|AC126048.3| Mus musculus BAC clone RP23-207O12 from 3, complete sequence Length = 188665 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 ctcttccctatcctcctccccctcc 195 ||||||||||||| ||||||||||| Sbjct: 26126 ctcttccctatccccctccccctcc 26150
>gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, complete sequence Length = 186636 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcc 195 ||||||||| ||||||||||||||| Sbjct: 177954 ctcttccctctcctcctccccctcc 177930
>ref|XM_813881.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506945.90) partial mRNA Length = 483 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 cctatcctcctccccctcctc 197 ||||||||||||||||||||| Sbjct: 165 cctatcctcctccccctcctc 145
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 171 ctcttccctatcctcctccccctcctcgtcgtc 203 |||| ||| |||||||||||||||||| ||||| Sbjct: 25287272 ctctcccccatcctcctccccctcctcctcgtc 25287304
>emb|AL022237.1|HS1191B2 Human DNA sequence from clone CTB-1191B2 on chromosome 22q13.2-13.3, complete sequence Length = 60828 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 ccagatctgcatgggaaaagt 580 ||||||||||||||||||||| Sbjct: 35934 ccagatctgcatgggaaaagt 35914
>gb|AC153659.4| Mus musculus BAC clone RP23-283A3 from chromosome 3, complete sequence Length = 220855 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcc 195 ||||||||||||| ||||||||||| Sbjct: 51745 ctcttccctatccccctccccctcc 51721
>emb|BX027681.1|CNS08TIT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA41BF09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 993 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 aagatcaaggagcagctggaggcgg 358 ||||||||||| ||||||||||||| Sbjct: 693 aagatcaaggaccagctggaggcgg 717
>emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chromosome 11 Contains the genes for two novel 7 transmembrane receptor (rhodopsin family) domain-containing proteins, a high mobility group box 1 (Hmgb1) pseudogene, the Cias1 gene for cold autoinflammatory syndrome 1 homolog (human), a novel gene (4933439C10Rik), the gene for a novel protein (D130067D09), a ribosomal protein L18 (Rpl18) pseudogene, an ariadne homolog 2 (Drosophila) (Arih2) pseudogene, the gene for a novel zinc finger domain-containing protein, the 3' end of the gene for a novel protein and one CpG island, complete sequence Length = 157300 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gcgggacccaccggctccgcc 312 ||||||||||||||||||||| Sbjct: 71108 gcgggacccaccggctccgcc 71128
>gb|AY245248.1| Homo sapiens BCL2-interacting killer (apoptosis-inducing) (BIK) gene, complete cds Length = 21560 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 ccagatctgcatgggaaaagt 580 ||||||||||||||||||||| Sbjct: 11911 ccagatctgcatgggaaaagt 11891
>dbj|AK122147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138G15, full insert sequence Length = 3697 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcctcgtcgtc 203 |||| ||| |||||||||||||||||| ||||| Sbjct: 271 ctctcccccatcctcctccccctcctcctcgtc 239
>ref|XM_316190.2| Anopheles gambiae str. PEST ENSANGP00000017082 (ENSANGG00000014593), partial mRNA Length = 1587 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 aagatcaaggagcagctggaggcgg 358 ||||||||||| ||||||||||||| Sbjct: 583 aagatcaaggaccagctggaggcgg 607
>emb|AJ323865.1|HSA323865 Homo sapiens genomic sequence surrounding NotI site, clone NB1-812C Length = 982 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 cggcctgggcgtcggcgccgg 286 ||||||||||||||||||||| Sbjct: 143 cggcctgggcgtcggcgccgg 123
>gb|AY589217.1| Poa secunda x Poa pratensis voucher PI 578808 clone 6 CDO504 gene, partial sequence Length = 758 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 atcctcctccccctcctcgtc 200 ||||||||||||||||||||| Sbjct: 62 atcctcctccccctcctcgtc 82
>gb|AY589216.1| Poa secunda voucher PI 578851 clone 3 CDO504 gene, partial sequence Length = 688 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 atcctcctccccctcctcgtc 200 ||||||||||||||||||||| Sbjct: 28 atcctcctccccctcctcgtc 48
>gb|AY589214.1| Poa secunda clone 3 CDO504 gene, partial sequence Length = 687 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 atcctcctccccctcctcgtc 200 ||||||||||||||||||||| Sbjct: 28 atcctcctccccctcctcgtc 48
>gb|AY589213.1| Poa arida voucher PI 578806 clone 3 CDO504 gene, partial sequence Length = 666 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 atcctcctccccctcctcgtc 200 ||||||||||||||||||||| Sbjct: 18 atcctcctccccctcctcgtc 38
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tcctcctccccctcctcgtcg 201 ||||||||||||||||||||| Sbjct: 95109 tcctcctccccctcctcgtcg 95129
>gb|AC137708.16| Mus musculus chromosome 3, clone RP24-277H8, complete sequence Length = 154779 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 ctcttccctatcctcctccccctcc 195 ||||||||| ||||||||||||||| Sbjct: 133457 ctcttccctctcctcctccccctcc 133481
>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158927 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 171 ctcttccctatcctcctccccctcctcgtcgtc 203 |||| ||| |||||||||||||||||| ||||| Sbjct: 49918 ctctcccccatcctcctccccctcctcctcgtc 49886
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 ctatcctcctccccctcctcg 198 ||||||||||||||||||||| Sbjct: 4238 ctatcctcctccccctcctcg 4258
>dbj|AB051441.1| Homo sapiens mRNA for KIAA1654 protein, partial cds Length = 5147 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 ccagatctgcatgggaaaagt 580 ||||||||||||||||||||| Sbjct: 2088 ccagatctgcatgggaaaagt 2108 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 102,347,699 Number of extensions: 5691445 Number of successful extensions: 146710 Number of sequences better than 10.0: 66 Number of HSP's gapped: 146707 Number of HSP's successfully gapped: 75 Length of query: 743 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 721 Effective length of database: 18,508,616,841 Effective search space: 13344712742361 Effective search space used: 13344712742361 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
