>Q9NX63:CHCH3_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 3 -|
           Homo sapiens (Human)
          Length = 227
 Score = 36.2 bits (82), Expect = 0.21
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +1

Query: 466 LEKLQKKEATMRDELTKRAKELHDKEFKLPYQNPSPCTDERAGCAECYRSNVQDPLKCAE 645
           LE+   +   +  E  ++A E  + +FK  Y++   C D +A   +CYR N    LKC+ 
Sbjct: 148 LEERSSEFYRVTTEQYQKAAEEVEAKFKR-YESHPVCADLQAKILQCYRENTHQTLKCSA 206

Query: 646 AVKRFEACV 672
              ++  CV
Sbjct: 207 LATQYMHCV 215

>Q5E9D3:CHCH3_BOVIN Coiled-coil-helix-coiled-coil-helix domain-containing protein 3 -|
           Bos taurus (Bovine)
          Length = 227

 Score = 35.8 bits (81), Expect = 0.28
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 466 LEKLQKKEATMRDELTKRAKELHDKEFKLPYQNPSPCTDERAGCAECYRSNVQDPLKCAE 645
           LE+   +   +  E  ++A E  + +FK  Y+    C D +A   +CYR N Q  L C+ 
Sbjct: 148 LEERSSEFYKVTTEQYQKAAEEVEAKFKR-YEYHPVCADLQAQILQCYRQNTQQTLSCSA 206

Query: 646 AVKRFEACV 672
              ++  CV
Sbjct: 207 LASQYMRCV 215

>Q9CRB9:CHCH3_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 3 -|
           Mus musculus (Mouse)
          Length = 227

 Score = 34.3 bits (77), Expect = 0.81
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +1

Query: 502 DELTKRAKELHDKEFKLPYQNPSPCTDERAGCAECYRSNVQDPLKCAEAVKRFEACV 672
           +E  K A+E+  K FK  Y+    C D +    +CYR N Q  L C+    ++  CV
Sbjct: 161 EEYQKAAEEVEAK-FKR-YEYHPVCADLQTKILQCYRQNTQQTLSCSALASQYMHCV 215

>Q03410:SYCP1_RAT Synaptonemal complex protein 1 - Rattus norvegicus (Rat)|
          Length = 997

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
 Frame = +1

Query: 421 EVEAIRTVVAESEKVL----------EKLQKKEATMRDELTKRAKELHDKEFKL 552
           E+E ++T++AE +K+L          E+LQ KE  +   L  R KE+HD E ++
Sbjct: 433 ELEELKTILAEDQKLLDEKKQVEKLAEELQGKEQELTFLLQTREKEIHDLEVQV 486

>Q9BRQ6:CHCH6_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 6 -|
           Homo sapiens (Human)
          Length = 235

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 466 LEKLQKKEATMRDELTKRAKELHDK-EFKLPYQNPSP-CTDERAGCAECYRSNVQDPLKC 639
           LE++++K A M    +++  E   K E  +  +   P C+  +A    CYR    + L C
Sbjct: 159 LERIERKNAEMYKLSSEQFHEAASKMESTIKPRRVEPVCSGLQAQILHCYRDRPHEVLLC 218

Query: 640 AEAVKRFEACV 672
           ++ VK ++ CV
Sbjct: 219 SDLVKAYQRCV 229

>Q59037:SMC_METJA Chromosome partition protein smc homolog - Methanococcus jannaschii|
          Length = 1169

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 421 EVEAIRTVVAESEKVLEKLQKKEATMRDELTKRAKELH 534
           E E ++  +AESE +++ L++ E  + DE+ K   EL+
Sbjct: 371 EKERLKEAIAESESIIKHLKESEMEIADEIAKNQNELY 408

>Q6BI82:VID21_DEBHA Chromatin modification-related protein VID21 - Debaryomyces|
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 1193

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 280 EQQEEPQDNGRELPTEPKSSPAPGWSLPPP 369
           +QQ++ Q+N   +P  P   P P   +PPP
Sbjct: 792 QQQKQQQNNQGNIPRPPSQGPGPNVGVPPP 821

>Q80UF4:SDCG8_MOUSE Serologically defined colon cancer antigen 8 - Mus musculus (Mouse)|
          Length = 717

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 415 IQEVEAIRTVVAESEKVLEKLQKKEATMRDELTKRAKELHDKEFKL 552
           +QE+E +R  ++ESE+ +E+ Q+K A  R E  +  + L + E +L
Sbjct: 494 VQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQL 539

>Q86SQ7:SDCG8_HUMAN Serologically defined colon cancer antigen 8 - Homo sapiens (Human)|
          Length = 713

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 418 QEVEAIRTVVAESEKVLEKLQKKEATMRDELTKRAKELHDKEFKL 552
           QE+E +R  + ES++ LE+ Q+K A  R+E  +  + L + E +L
Sbjct: 491 QEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQL 535

>Q91VN4:CHCH6_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 6 -|
           Mus musculus (Mouse)
          Length = 273

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 472 KLQKKEATMRDELTKRAKELHDK-EFKLPYQNPSP-CTDERAGCAECYRSNVQDPLKCAE 645
           ++Q+K A +    +++  E   K E  +  +   P C+  +A    CYR ++ + L C++
Sbjct: 199 RIQEKNAELYKLSSQQFHEAASKAESTIKPRRVEPVCSGLQAQILRCYRDHLHEVLLCSD 258

Query: 646 AVKRFEACV 672
            VK ++ CV
Sbjct: 259 LVKAYQHCV 267


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 131,450,897
Number of extensions: 2353337
Number of successful extensions: 8027
Number of sequences better than 10.0: 10
Number of HSP's gapped: 8012
Number of HSP's successfully gapped: 10
Length of query: 331
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 217
Effective length of database: 69,416,809
Effective search space: 15063447553
Effective search space used: 15063447553
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)