Clone Name | FLbaf96d10 |
---|---|
Clone Library Name | barley_pub |
>P51531:SMCA2_HUMAN Probable global transcription activator SNF2L2 - Homo sapiens| (Human) Length = 1586 Score = 35.4 bits (80), Expect = 0.66 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +3 Query: 237 PAPFTAAQYEELEQQALIYKYLVAGVPVPQDLLLPIR 347 P+PF+ Q +L Q L YK L G P+P+ L L ++ Sbjct: 171 PSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQ 207
>P34909:NOT4_YEAST General negative regulator of transcription subunit 4 -| Saccharomyces cerevisiae (Baker's yeast) Length = 587 Score = 33.5 bits (75), Expect = 2.5 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 369 SRFYHHHALGYGSY--FGKKLDPEPGRC-RRTDG--KKWRCSKEAAQDSKYCERHM 521 S YHHH+ GYG Y FG K D RC + DG R K A +KYC ++ Sbjct: 186 SEHYHHHSPGYGVYITFGSKDD--AARCIAQVDGTYMDGRLIKAAYGTTKYCSSYL 239
>P06921:VE2_HPV05 Regulatory protein E2 - Human papillomavirus type 5| Length = 514 Score = 32.3 bits (72), Expect = 5.6 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = -3 Query: 711 SRKAQQCPCAAEQTPGRRSHRQWRSPDTASGCGRRRWRAAGTGSGSWRRAAFPQAFLNGC 532 SR + P + GR R+ RSP T+S C +R + A S + R A + G Sbjct: 310 SRSRGRSPTTCRRGGGRSPRRRSRSPSTSSSCTTQRSQRARAESSTTRGARGSRGSRGGS 369 Query: 531 --GRGACGARSTWS 496 GRG RS+ S Sbjct: 370 RGGRGRRRGRSSSS 383
>P19679:RS2_SPICI 30S ribosomal protein S2 - Spiroplasma citri| Length = 359 Score = 32.3 bits (72), Expect = 5.6 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Frame = +3 Query: 315 PVPQDLLLPIRRGFETLASRFYHHHALGYGSYFGKKL-DPE--PGRCRRTDGKKWRCSKE 485 PVP D ++P + HH A YG G K+ +P+ P R DG + R S+ Sbjct: 194 PVPIDYIIPANDDTSRSIAIITHHIADLYGDAMGIKMPEPQFKPSEFTRRDGDENRNSRG 253 Query: 486 AAQDSKYCERHMHRGRN 536 D++ RGR+ Sbjct: 254 GQYDNRRMSGRNERGRD 270
>Q10384:Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 - Mycobacterium tuberculosis| Length = 645 Score = 32.0 bits (71), Expect = 7.3 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = +2 Query: 446 PADGRQEVAVLQGGRSGLQVLRAPHAPRPQPFKKACGNAARRQLPLPVPAARHRRLPQPL 625 P +G ++AV++ G+ RAP P P A A+ LP P P L + + Sbjct: 492 PREGGYQLAVIRHGQLAAAG-RAPRGVPPMPVVDAIRRGAQAILPTPAPLG--GALVEEI 548 Query: 626 AVSGDRHWRWLLRPGV 673 A+ RWL PGV Sbjct: 549 ALIA----RWLAEPGV 560
>Q5DWW9:SSY23_ORYSA Soluble starch synthase 2-3, chloroplast precursor - Oryza sativa| (Rice) Length = 810 Score = 32.0 bits (71), Expect = 7.3 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 470 AVLQGGRSGLQVLRAPHAPRPQPFKKACGNAAR 568 A+L GR+G LRAP PRP+P ++ G R Sbjct: 38 ALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRR 70
>Q9LYJ9:RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 - Arabidopsis thaliana| (Mouse-ear cress) Length = 645 Score = 32.0 bits (71), Expect = 7.3 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -3 Query: 666 GRRSHRQWRSPDTASGCGRRRWRAAGTGSGSWRRAAFPQAFLNGCGRGACGARSTWSPER 487 G R+W +P + G GR + +G G G + GRG G R +W+P R Sbjct: 545 GMNKFRRWGTPSSGGGGGRGGYGDSGYG-GRGESGYGSRGDSGYGGRGDSGGRGSWAPSR 603
>Q99558:M3K14_HUMAN Mitogen-activated protein kinase kinase kinase 14 - Homo sapiens| (Human) Length = 947 Score = 32.0 bits (71), Expect = 7.3 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 512 APHAPRPQPFKKACGNAARRQLPLPVPAARHRRLPQPLAVSGDRHWRW 655 +P AP P+P ++ G A + Q PLP + P PL +S + W Sbjct: 694 SPRAPGPRPAEETTGRAPKLQPPLPPEPPEPNKSP-PLTLSKEESGMW 740
>P18466:HA19_CANFA DLA class I histocompatibility antigen, A9/A9 alpha chain precursor| - Canis familiaris (Dog) Length = 362 Score = 32.0 bits (71), Expect = 7.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 651 RQWRSPDTASGCGRRRWRAAGTGSGSWR 568 R W + DTA+ +R+W AAG WR Sbjct: 155 RSWTAADTAAQITQRKWEAAGVAELQWR 182
>P51532:SMCA4_HUMAN Probable global transcription activator SNF2L4 - Homo sapiens| (Human) Length = 1647 Score = 31.6 bits (70), Expect = 9.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 237 PAPFTAAQYEELEQQALIYKYLVAGVPVPQDLLLPIR 347 P PF Q +L Q + YK L G P+P L + ++ Sbjct: 169 PTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQ 205
>Q2GSJ9:HIR1_CHAGB Protein HIR1 - Chaetomium globosum (Soil fungus)| Length = 1080 Score = 31.6 bits (70), Expect = 9.5 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Frame = +3 Query: 1047 WPKDRDSWPELQDHDANNNSNAFSATKLSISMPVTSSDFSGT---TAGSRSPNGIYSR*T 1217 W + +SW L N+N ++ SA + PVT+ + +GT T + +P+ + T Sbjct: 825 WQRLSESWWALGSQYWNSNDSSISALSTTAVGPVTAKNINGTASSTTTTTTPDKPDTAAT 884 Query: 1218 ASAGLISADLPWSRRASSN 1274 A G+ + +P R +++ Sbjct: 885 AEVGVSAGIIPHLERHTTS 903
>Q9CPY3:CDCA5_MOUSE Sororin - Mus musculus (Mouse)| Length = 264 Score = 31.6 bits (70), Expect = 9.5 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 720 RRSSRKAQQCPCAAEQTPGRRSHRQWRSPDTASG 619 RRS + Q CA+ TPGRRS + PD G Sbjct: 143 RRSYSRLQSLGCASTSTPGRRSFFGFEGPDDLPG 176 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 201,729,862 Number of extensions: 4147804 Number of successful extensions: 13345 Number of sequences better than 10.0: 12 Number of HSP's gapped: 13302 Number of HSP's successfully gapped: 12 Length of query: 519 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 401 Effective length of database: 68,319,629 Effective search space: 27396171229 Effective search space used: 27396171229 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)