ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P51531:SMCA2_HUMAN Probable global transcription activator SNF2L... 35 0.66
2P34909:NOT4_YEAST General negative regulator of transcription su... 33 2.5
3P06921:VE2_HPV05 Regulatory protein E2 - Human papillomavirus ty... 32 5.6
4P19679:RS2_SPICI 30S ribosomal protein S2 - Spiroplasma citri 32 5.6
5Q10384:Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 - Mycob... 32 7.3
6Q5DWW9:SSY23_ORYSA Soluble starch synthase 2-3, chloroplast prec... 32 7.3
7Q9LYJ9:RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 - Arabi... 32 7.3
8Q99558:M3K14_HUMAN Mitogen-activated protein kinase kinase kinas... 32 7.3
9P18466:HA19_CANFA DLA class I histocompatibility antigen, A9/A9 ... 32 7.3
10P51532:SMCA4_HUMAN Probable global transcription activator SNF2L... 32 9.5
11Q2GSJ9:HIR1_CHAGB Protein HIR1 - Chaetomium globosum (Soil fungus) 32 9.5
12Q9CPY3:CDCA5_MOUSE Sororin - Mus musculus (Mouse) 32 9.5

>P51531:SMCA2_HUMAN Probable global transcription activator SNF2L2 - Homo sapiens|
           (Human)
          Length = 1586
 Score = 35.4 bits (80), Expect = 0.66
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 PAPFTAAQYEELEQQALIYKYLVAGVPVPQDLLLPIR 347
           P+PF+  Q  +L  Q L YK L  G P+P+ L L ++
Sbjct: 171 PSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQ 207



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>P34909:NOT4_YEAST General negative regulator of transcription subunit 4 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 587

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 369 SRFYHHHALGYGSY--FGKKLDPEPGRC-RRTDG--KKWRCSKEAAQDSKYCERHM 521
           S  YHHH+ GYG Y  FG K D    RC  + DG     R  K A   +KYC  ++
Sbjct: 186 SEHYHHHSPGYGVYITFGSKDD--AARCIAQVDGTYMDGRLIKAAYGTTKYCSSYL 239



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>P06921:VE2_HPV05 Regulatory protein E2 - Human papillomavirus type 5|
          Length = 514

 Score = 32.3 bits (72), Expect = 5.6
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -3

Query: 711 SRKAQQCPCAAEQTPGRRSHRQWRSPDTASGCGRRRWRAAGTGSGSWRRAAFPQAFLNGC 532
           SR   + P    +  GR   R+ RSP T+S C  +R + A   S + R A   +    G 
Sbjct: 310 SRSRGRSPTTCRRGGGRSPRRRSRSPSTSSSCTTQRSQRARAESSTTRGARGSRGSRGGS 369

Query: 531 --GRGACGARSTWS 496
             GRG    RS+ S
Sbjct: 370 RGGRGRRRGRSSSS 383



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>P19679:RS2_SPICI 30S ribosomal protein S2 - Spiroplasma citri|
          Length = 359

 Score = 32.3 bits (72), Expect = 5.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +3

Query: 315 PVPQDLLLPIRRGFETLASRFYHHHALGYGSYFGKKL-DPE--PGRCRRTDGKKWRCSKE 485
           PVP D ++P         +   HH A  YG   G K+ +P+  P    R DG + R S+ 
Sbjct: 194 PVPIDYIIPANDDTSRSIAIITHHIADLYGDAMGIKMPEPQFKPSEFTRRDGDENRNSRG 253

Query: 486 AAQDSKYCERHMHRGRN 536
              D++       RGR+
Sbjct: 254 GQYDNRRMSGRNERGRD 270



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>Q10384:Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 - Mycobacterium tuberculosis|
          Length = 645

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = +2

Query: 446 PADGRQEVAVLQGGRSGLQVLRAPHAPRPQPFKKACGNAARRQLPLPVPAARHRRLPQPL 625
           P +G  ++AV++ G+      RAP    P P   A    A+  LP P P      L + +
Sbjct: 492 PREGGYQLAVIRHGQLAAAG-RAPRGVPPMPVVDAIRRGAQAILPTPAPLG--GALVEEI 548

Query: 626 AVSGDRHWRWLLRPGV 673
           A+      RWL  PGV
Sbjct: 549 ALIA----RWLAEPGV 560



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>Q5DWW9:SSY23_ORYSA Soluble starch synthase 2-3, chloroplast precursor - Oryza sativa|
           (Rice)
          Length = 810

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 470 AVLQGGRSGLQVLRAPHAPRPQPFKKACGNAAR 568
           A+L  GR+G   LRAP  PRP+P ++  G   R
Sbjct: 38  ALLYDGRAGRLALRAPPPPRPRPRRRDAGVVRR 70



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>Q9LYJ9:RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 645

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 666 GRRSHRQWRSPDTASGCGRRRWRAAGTGSGSWRRAAFPQAFLNGCGRGACGARSTWSPER 487
           G    R+W +P +  G GR  +  +G G G        +      GRG  G R +W+P R
Sbjct: 545 GMNKFRRWGTPSSGGGGGRGGYGDSGYG-GRGESGYGSRGDSGYGGRGDSGGRGSWAPSR 603



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>Q99558:M3K14_HUMAN Mitogen-activated protein kinase kinase kinase 14 - Homo sapiens|
           (Human)
          Length = 947

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 512 APHAPRPQPFKKACGNAARRQLPLPVPAARHRRLPQPLAVSGDRHWRW 655
           +P AP P+P ++  G A + Q PLP       + P PL +S +    W
Sbjct: 694 SPRAPGPRPAEETTGRAPKLQPPLPPEPPEPNKSP-PLTLSKEESGMW 740



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>P18466:HA19_CANFA DLA class I histocompatibility antigen, A9/A9 alpha chain precursor|
           - Canis familiaris (Dog)
          Length = 362

 Score = 32.0 bits (71), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 651 RQWRSPDTASGCGRRRWRAAGTGSGSWR 568
           R W + DTA+   +R+W AAG     WR
Sbjct: 155 RSWTAADTAAQITQRKWEAAGVAELQWR 182



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>P51532:SMCA4_HUMAN Probable global transcription activator SNF2L4 - Homo sapiens|
           (Human)
          Length = 1647

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 237 PAPFTAAQYEELEQQALIYKYLVAGVPVPQDLLLPIR 347
           P PF   Q  +L  Q + YK L  G P+P  L + ++
Sbjct: 169 PTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQ 205



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>Q2GSJ9:HIR1_CHAGB Protein HIR1 - Chaetomium globosum (Soil fungus)|
          Length = 1080

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 1047 WPKDRDSWPELQDHDANNNSNAFSATKLSISMPVTSSDFSGT---TAGSRSPNGIYSR*T 1217
            W +  +SW  L     N+N ++ SA   +   PVT+ + +GT   T  + +P+   +  T
Sbjct: 825  WQRLSESWWALGSQYWNSNDSSISALSTTAVGPVTAKNINGTASSTTTTTTPDKPDTAAT 884

Query: 1218 ASAGLISADLPWSRRASSN 1274
            A  G+ +  +P   R +++
Sbjct: 885  AEVGVSAGIIPHLERHTTS 903



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>Q9CPY3:CDCA5_MOUSE Sororin - Mus musculus (Mouse)|
          Length = 264

 Score = 31.6 bits (70), Expect = 9.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 720 RRSSRKAQQCPCAAEQTPGRRSHRQWRSPDTASG 619
           RRS  + Q   CA+  TPGRRS   +  PD   G
Sbjct: 143 RRSYSRLQSLGCASTSTPGRRSFFGFEGPDDLPG 176


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 201,729,862
Number of extensions: 4147804
Number of successful extensions: 13345
Number of sequences better than 10.0: 12
Number of HSP's gapped: 13302
Number of HSP's successfully gapped: 12
Length of query: 519
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 401
Effective length of database: 68,319,629
Effective search space: 27396171229
Effective search space used: 27396171229
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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