>P56821:IF39_TOBAC Eukaryotic translation initiation factor 3 subunit 9 - Nicotiana|
           tabacum (Common tobacco)
          Length = 719
 Score =  165 bits (418), Expect = 1e-40
 Identities = 83/121 (68%), Positives = 94/121 (77%)
 Frame = +2

Query: 125 MALAISMEAIDARARELGIDLDSVDLDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFA 304
           MA   SM  I A A  +G+DL  +DLDSI LPPGED  I SDD+DL++ ED  E + GF 
Sbjct: 1   MADVTSMGEITAIAARIGVDLSQIDLDSIHLPPGEDCGIPSDDDDLME-EDPLEFDAGFG 59

Query: 305 NIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEYNTP 484
           NI+VVDNLPVVP EK+EKLE V+RKIY QLGVIKE GLWMP DP+T KTLGYCFIEYNTP
Sbjct: 60  NILVVDNLPVVPKEKFEKLEGVVRKIYSQLGVIKEDGLWMPVDPETHKTLGYCFIEYNTP 119

Query: 485 Q 487
           Q
Sbjct: 120 Q 120

>Q9C5Z1:IF39_ARATH Eukaryotic translation initiation factor 3 subunit 9 - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 712

 Score =  159 bits (402), Expect = 1e-38
 Identities = 79/112 (70%), Positives = 89/112 (79%)
 Frame = +2

Query: 152 IDARARELGIDLDSVDLDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFANIIVVDNLP 331
           IDARA +LGID   V+ DSI LPPGEDF I SDDE + Q +D  E + GF NIIVVD+LP
Sbjct: 6   IDARAAKLGIDWSQVNFDSIQLPPGEDFGIESDDEAVYQ-DDQSEFDTGFGNIIVVDHLP 64

Query: 332 VVPPEKYEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEYNTPQ 487
           VVP EK+EKLE V++KIY QLGVIKE GLWMP DP TK TLGYCFIE+NTPQ
Sbjct: 65  VVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116

>P55884:IF39_HUMAN Eukaryotic translation initiation factor 3 subunit 9 - Homo sapiens|
           (Human)
          Length = 814

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +2

Query: 185 LDSVDLDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFANIIVVDNLPVVPPEKYEK 358
           L++ D D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 143 LENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 202

Query: 359 LENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEYNTP 484
           L+NV+ KI+ + G I     +   D KTK   GY F+EY +P
Sbjct: 203 LKNVIHKIFSKFGKI-TNDFYPEEDGKTK---GYIFLEYASP 240

>Q4G061:IF39_RAT Eukaryotic translation initiation factor 3 subunit 9 - Rattus|
           norvegicus (Rat)
          Length = 797

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +2

Query: 185 LDSVDLDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFANIIVVDNLPVVPPEKYEK 358
           L++ + D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 126 LENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 185

Query: 359 LENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEYNTP 484
           L+NV+ KI+ + G I     +   D KTK   GY F+EY +P
Sbjct: 186 LKNVIHKIFSKFGKI-INDYYPEEDGKTK---GYIFLEYASP 223

>Q8JZQ9:IF39_MOUSE Eukaryotic translation initiation factor 3 subunit 9 - Mus musculus|
           (Mouse)
          Length = 803

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +2

Query: 185 LDSVDLDSITLPPGEDFDILSDDEDLLQN--EDIPELEMGFANIIVVDNLPVVPPEKYEK 358
           L++ + D  +    EDF     +E+LL +  +D P+   G  ++IVVDN+P V P++ EK
Sbjct: 132 LENGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEK 191

Query: 359 LENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEYNTP 484
           L+NV+ KI+ + G I     +   D KTK   GY F+EY +P
Sbjct: 192 LKNVIHKIFSKFGKI-INDYYPEEDGKTK---GYIFLEYASP 229

>P06103:IF39_YEAST Eukaryotic translation initiation factor 3 90 kDa subunit -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 763

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +2

Query: 236 DILSDDEDLLQNEDIPEL--EMGFANIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKE 409
           DI  DD D    E+  ++  E  F   IVV+  PV+P  K   L+  L  ++ + G  K 
Sbjct: 52  DIPVDDIDFSDLEEQYKVTEEFNFDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--KV 109

Query: 410 GGLWMPTDPKTKKTLGYCFIE 472
             +  P D  T KT G+ F+E
Sbjct: 110 VNMEFPIDEATGKTKGFLFVE 130

>Q10425:IF39_SCHPO Probable eukaryotic translation initiation factor 3 subunit 9 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 725

 Score = 40.0 bits (92), Expect = 0.009
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
 Frame = +2

Query: 239 ILSDDEDLLQNEDIPELEM--------GFANIIVVDNLPVVPPEKYEKLENVLR-KIYGQ 391
           I+  DE++    D+ ELE+        G+  ++V++  PVV   K +     L  K+  +
Sbjct: 13  IVVKDEEI----DVSELEVKLNVTKPVGYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAK 68

Query: 392 LGVIKEGGLWMPTDPKT--KKTLGYCFIEY 475
           +G +KE G +MP + K   K +LG  F ++
Sbjct: 69  IGKVKENGFYMPFEEKNGKKMSLGLVFADF 98

>O17850:ATX3_CAEEL Ataxin-3 homolog - Caenorhabditis elegans|
          Length = 317

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 329 PVVPPEKYEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCF 466
           P V P+K +KLE V+ K +  +G    GG   P D + +K L   F
Sbjct: 184 PKVTPKKEQKLEKVMTKFFNTVGKRLGGGSGAPPDSQEEKDLAIAF 229

>P39113:CAT8_YEAST Regulatory protein CAT8 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 1433

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 727  ASNNHLTAKKSQPLSNTTNSTKKRGVPRTKVNQDTEFKRSRDDLSHGRNAQKLQKDTESS 548
            ++NN+ +     P++NTTN  K     R K  +D +       +S G NA   Q DT+ +
Sbjct: 971  SNNNNNSEAGHSPMTNTTNGNK-----RLKYEKDAKRNAKDGGISKGENAHNFQNDTKKN 1025

>O34559:YTER_BACSU Putative glycosyl hydrolase yteR - Bacillus subtilis|
          Length = 373

 Score = 33.5 bits (75), Expect = 0.88
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 236 DILSDDE-DLLQNEDIPELEMGFANIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKEG 412
           D+L DD  +LL   D  EL+   A +I+         E+Y K    LR +YG L    EG
Sbjct: 71  DLLIDDNGNLLFRRD--ELDAIQAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEG 128

Query: 413 GLW 421
           G W
Sbjct: 129 GFW 131

>Q9Y4C8:RBM19_HUMAN Probable RNA-binding protein 19 - Homo sapiens (Human)|
          Length = 960

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +2

Query: 272 EDIPELEMGFANIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKT 451
           E+  E ++  +  + V NLP      Y   E  L K++ + G + E  L  P D  TKK 
Sbjct: 391 ENEEEEDLAESGRLFVRNLP------YTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKP 442

Query: 452 LGYCFIEYNTPQ 487
            G+ FI +  P+
Sbjct: 443 KGFAFITFMFPE 454

>P0C064:GRSB_BREBE Gramicidin S synthetase 2 - Brevibacillus brevis (Bacillus brevis)|
          Length = 4450

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 359 LENVLRKIYGQLGVIKEGGLWMPTDPK-TKKTLGY 460
           +E  +  I G LG++K GG ++P DP+  K+ +GY
Sbjct: 525 MERSVEMIVGILGILKAGGAFVPIDPEYPKERIGY 559

>P0C063:GRSB_ANEMI Gramicidin S synthetase 2 - Aneurinibacillus migulanus|
          Length = 4451

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 359 LENVLRKIYGQLGVIKEGGLWMPTDPK-TKKTLGY 460
           +E  +  I G LG++K GG ++P DP+  K+ +GY
Sbjct: 525 MERSVEMIVGILGILKAGGAFVPIDPEYPKERIGY 559

>O43040:CTF1_SCHPO Cleavage and termination factor 1 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 363

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 287 LEMGFANIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCF 466
           + M   N++ V N+P      Y+  E  + +I+ Q+G +K   L +  DP+T    GY F
Sbjct: 1   MSMTAGNVVFVGNIP------YDVSEQQMTEIFNQVGPVKTFKLVL--DPETGSGKGYGF 52

Query: 467 IEY 475
            E+
Sbjct: 53  CEF 55

>Q08965:BMS1_YEAST Ribosome biogenesis protein BMS1 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 1183

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 673 NSTKKRGVPRTKVNQDTEFKRSRDDLSHGRNAQKLQKDTES 551
           N+T ++G  +  +  D+EF+ S D+ S  R A    K TES
Sbjct: 502 NNTGEQGAEKLALETDSEFEESEDEFSWERTAANKLKKTES 542

>P75378:ACPH_MYCPN Acyl carrier protein homolog - Mycoplasma pneumoniae|
          Length = 84

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = +2

Query: 179 IDLDSVDLDSITLPPGEDFDILSDDEDLLQNEDIPEL 289
           + +DS+D+ S+ +   ++FDI+ +DE L+Q  ++ EL
Sbjct: 35  LKIDSLDMFSVIVSLEKEFDIMFEDEKLMQLNNLAEL 71

>Q8VCV9:NAGTA_MOUSE Sodium-dependent glucose transporter 1A - Mus musculus (Mouse)|
          Length = 425

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +3

Query: 414 GFGCLQTRRRRRPWATASLSIILRRFVAS-CQLHLFTYLHDGMRQWLDSVSFCNFCAFLP 590
           G  C +  R+++P A+A  +   +   A  C L LF + + G      S  F      + 
Sbjct: 201 GLFCKKHSRQKKPRASAEGARRAKYHRALLCLLFLFFFFYVGAEITYGSYIFSFATTHVG 260

Query: 591 *ERSSLLRLNSVSWLTFV--RGTPLFLVEFV 677
            E S    LNS+ W TF   RG  +F   F+
Sbjct: 261 MEESEAAGLNSIFWGTFAACRGLAIFFATFL 291

>Q8JZM8:MUC4_MOUSE Mucin-4 precursor - Mus musculus (Mouse)|
          Length = 3443

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 724 SNNHLTAKKSQPLSNTTNSTKKRGVPRTKVNQDTEFKRSRDDLSHGRNAQKLQKDTE 554
           S   LT+  SQ + +   S+K +    TKVN  T    SRD +    ++Q+     E
Sbjct: 435 STQELTSSYSQHIQSKGTSSKSQTTTNTKVNTSTPSASSRDKIQTETSSQRTNSPGE 491

>Q640A2:HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like - Xenopus tropicalis|
           (Western clawed frog) (Silurana tropicalis)
          Length = 297

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 338 PPEKY-------EKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEY 475
           PP+K        E  E  +++ +G  G I+   + +P D KT +  G+CF+ Y
Sbjct: 109 PPKKVFVGGLSPETTEEQIKQYFGGFGEIEN--IELPMDTKTNERRGFCFVTY 159

>Q6NU14:HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B - Xenopus laevis|
           (African clawed frog)
          Length = 291

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 338 PPEKY-------EKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEY 475
           PP+K        E  E  +++ +G  G I+   + +P D KT +  G+CF+ Y
Sbjct: 117 PPKKVFVGGLSPETTEEQIKQYFGGFGEIEN--IELPMDTKTNERRGFCFVTY 167

>Q7ZX83:HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A - Xenopus laevis|
           (African clawed frog)
          Length = 293

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 338 PPEKY-------EKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEY 475
           PP+K        E  E  +++ +G  G I+   + +P D KT +  G+CF+ Y
Sbjct: 109 PPKKVFVGGLSPETTEEQIKQYFGGFGEIEN--IELPIDTKTNERRGFCFVTY 159

>O68008:BACC_BACLI Bacitracin synthetase 3 - Bacillus licheniformis|
          Length = 6359

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 380 IYGQLGVIKEGGLWMPTDPKTKK 448
           I G +G++K GG ++P DP+T K
Sbjct: 523 IIGIIGILKAGGAYLPIDPETPK 545

>O68006:BACA_BACLI Bacitracin synthetase 1 - Bacillus licheniformis|
          Length = 5255

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 380 IYGQLGVIKEGGLWMPTDPKTKK 448
           I G +G++K GG ++P DP+T K
Sbjct: 101 IIGIIGILKAGGAYLPIDPETPK 123

>P47529:ACPH_MYCGE Acyl carrier protein homolog - Mycoplasma genitalium|
          Length = 84

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +2

Query: 131 LAISMEAIDARARELGIDLDSVDLDSITLPPGEDFDILSDDEDLLQNEDIPELEMGFANI 310
           L +  + I+   REL ID  S+D+ SI +    +F I  DDE L+  +++ +L +   N+
Sbjct: 21  LNLDEKTINQPLRELKID--SLDMFSIVVSLENEFGISFDDEKLMNLKNLADLVLEVKNL 78

Query: 311 I 313
           +
Sbjct: 79  L 79

>Q97R63:Y967_STRPN Putative metalloprotease SP_0967 - Streptococcus pneumoniae|
          Length = 165

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 161 RARELGIDLDSVD--LDSITLPPGEDFDILSDDEDLLQNEDIPELEMGF 301
           R+ EL ++  + D   D I+L    + +I  D+EDLL+N ++ E+   F
Sbjct: 47  RSHELNLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEF 95

>Q42404:RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 427

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 350 YEKLENVLRKIYGQLGVIKEGGLWMPTDPKTKKTLGYCFIEY 475
           YE  E+ +++ +   G IK   + + TD  T K  GY FIEY
Sbjct: 147 YESSESKIKREFESYGPIKR--VHLVTDQLTNKPKGYAFIEY 186

>Q9VD51:PIT_DROME Probable ATP-dependent RNA helicase pitchoune - Drosophila|
           melanogaster (Fruit fly)
          Length = 680

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 107 PPNSVKMALAISMEAIDARARELGIDLDSVDLDSITLPPGEDFDILSDDEDLLQNEDIPE 286
           PP   ++ +A S    D   +E   D DS DLD +     ED D  S+D+D  ++ED  E
Sbjct: 82  PPKKQQIQVANSDSESDDDEQEDEADEDS-DLDEVAEVDEEDVDSGSEDDDQQEDEDEEE 140

>Q70LM5:LGRC_BREPA Linear gramicidin synthetase subunit C [Includes: ATP-dependent|
            valine adenylase - Brevibacillus parabrevis
          Length = 7756

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 359  LENVLRKIYGQLGVIKEGGLWMPTDP 436
            +E     I GQLG++K GG ++P DP
Sbjct: 6753 VERSSEMIVGQLGILKAGGAFVPMDP 6778

>Q58773:CARB1_METJA Carbamoyl-phosphate synthase large chain, N-terminal section -|
           Methanococcus jannaschii
          Length = 482

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 272 EDIPELEMGFANIIVVDNLPVVPPEKYEKLENVLRKIYGQLGVIKEGG 415
           E+I  + +     IVV  +  +P E Y+KL N   KI   LG+  EGG
Sbjct: 232 ENIDPMGIHTGESIVVSPIQTLPDEFYQKLRNAAIKIIRHLGI--EGG 277


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 113,077,357
Number of extensions: 2385508
Number of successful extensions: 8071
Number of sequences better than 10.0: 29
Number of HSP's gapped: 8059
Number of HSP's successfully gapped: 29
Length of query: 246
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 136
Effective length of database: 70,513,989
Effective search space: 9589902504
Effective search space used: 9589902504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)