ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf98d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY210453.1| Alcyonidium diaphanum 28S ribosomal RNA gene, par... 50 0.019
2gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, comple... 46 0.30
3gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, com... 44 1.2
4gb|AC024697.6| Homo sapiens BAC clone RP11-9D6 from 2, complete ... 44 1.2
5gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, compl... 44 1.2
6ref|XM_363935.1| Magnaporthe grisea 70-15 predicted protein (MG0... 42 4.6
7gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 4.6
8gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, com... 42 4.6
9dbj|AK047834.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 4.6
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 4.6
11emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 i... 42 4.6
12gb|AC007969.3| Homo sapiens BAC clone RP11-471A5 from 2, complet... 42 4.6
13emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on ch... 42 4.6

>gb|AY210453.1| Alcyonidium diaphanum 28S ribosomal RNA gene, partial sequence
          Length = 3390
 Score = 50.1 bits (25), Expect = 0.019
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 166 acgggccgccggcggcgccgcccga 190
           |||||||||||||||||||||||||
Sbjct: 481 acgggccgccggcggcgccgcccga 505



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>gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, complete sequence
          Length = 100732

 Score = 46.1 bits (23), Expect = 0.30
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 1177  tattcaaatttttatggtcattttaaa 1203
             |||||||||||||||||| ||||||||
Sbjct: 96814 tattcaaatttttatggttattttaaa 96840



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>gb|AC101922.12| Mus musculus chromosome 3, clone RP24-182A8, complete sequence
          Length = 173400

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1186   ttttatggtcattttaaagttg 1207
              ||||||||||||||||||||||
Sbjct: 146840 ttttatggtcattttaaagttg 146819



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>gb|AC024697.6| Homo sapiens BAC clone RP11-9D6 from 2, complete sequence
          Length = 149050

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1184   atttttatggtcattttaaagt 1205
              ||||||||||||||||||||||
Sbjct: 115584 atttttatggtcattttaaagt 115563



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>gb|AC099584.8| Mus musculus chromosome 3, clone RP23-1A12, complete sequence
          Length = 217366

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1186   ttttatggtcattttaaagttg 1207
              ||||||||||||||||||||||
Sbjct: 168513 ttttatggtcattttaaagttg 168534



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>ref|XM_363935.1| Magnaporthe grisea 70-15 predicted protein (MG01861.4) partial mRNA
          Length = 522

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 cgggccgccggcggcgccgcc 187
           |||||||||||||||||||||
Sbjct: 426 cgggccgccggcggcgccgcc 406



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 214     gtcggcgctcagtttcacgcccatcgcca 242
               |||| ||| ||||||||||||||||||||
Sbjct: 1323235 gtcgtcgcccagtttcacgcccatcgcca 1323207



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>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence
          Length = 122682

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    taggaagaagcgaggagggac 75
             |||||||||||||||||||||
Sbjct: 51012 taggaagaagcgaggagggac 50992



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>dbj|AK047834.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130002P21 product:unclassifiable, full
           insert sequence
          Length = 2160

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 55  taggaagaagcgaggagggac 75
           |||||||||||||||||||||
Sbjct: 387 taggaagaagcgaggagggac 367



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 171     ccgccggcggcgccgcccgag 191
               |||||||||||||||||||||
Sbjct: 1600015 ccgccggcggcgccgcccgag 1599995



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>emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 in linkage group 20,
             complete sequence
          Length = 173818

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1174  aaatattcaaatttttatggt 1194
             |||||||||||||||||||||
Sbjct: 62131 aaatattcaaatttttatggt 62111



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>gb|AC007969.3| Homo sapiens BAC clone RP11-471A5 from 2, complete sequence
          Length = 162760

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1170  tctcaaatattcaaattttta 1190
             |||||||||||||||||||||
Sbjct: 70175 tctcaaatattcaaattttta 70155



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>emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on chromosome 11, complete
             sequence
          Length = 196938

 Score = 42.1 bits (21), Expect = 4.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    taggaagaagcgaggagggac 75
             |||||||||||||||||||||
Sbjct: 24201 taggaagaagcgaggagggac 24181


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 205,556,102
Number of extensions: 10642508
Number of successful extensions: 228203
Number of sequences better than 10.0: 13
Number of HSP's gapped: 228203
Number of HSP's successfully gapped: 13
Length of query: 1221
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1198
Effective length of database: 18,503,978,556
Effective search space: 22167766310088
Effective search space used: 22167766310088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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