Clone Name | FLbaf96a19 |
---|---|
Clone Library Name | barley_pub |
>emb|CT831055.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120L09, full insert sequence Length = 1252 Score = 476 bits (240), Expect = e-131 Identities = 539/636 (84%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 292 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 351 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccctgagcttgacaatgatc 439 || |||| ||||| |||||||||| |||||||| | |||||| ||| || ||||||| Sbjct: 352 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatc 411 Query: 440 cctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaag 499 |||||||||| |||||||||||| |||| |||||| ||||||||||| || || |||| Sbjct: 412 cctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaag 471 Query: 500 atgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggaggg 558 | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 472 acttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagga 530 Query: 559 aatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaag 618 || |||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 531 aaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaag 590 Query: 619 gaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtgtac 678 ||||||||||||||| |||||||||||||||||||||| ||||| || || ||||||||| Sbjct: 591 gaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtac 650 Query: 679 atccatattatcagaggggaggagctgtaccgccttgcgagggactacactagatatctg 738 |||||||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 651 atccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatctt 710 Query: 739 gttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagtttctca 798 ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| Sbjct: 711 gttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctca 770 Query: 799 gagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccacttcg 858 |||| || | |||| || ||||| || ||||| | ||||||||| || |||| || Sbjct: 771 gagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctcc 830 Query: 859 gaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcaga 918 |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || Sbjct: 831 aaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccga 890 Query: 919 gggaattggcgtccacatgcacagaagtcttagttc 954 || |||||||| || ||||| ||| ||||||||||| Sbjct: 891 ggaaattggcgcccgcatgcgcaggagtcttagttc 926
>ref|NM_001053909.1| Oryza sativa (japonica cultivar-group) Os02g0606000 (Os02g0606000) mRNA, complete cds Length = 1393 Score = 476 bits (240), Expect = e-131 Identities = 539/636 (84%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 294 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 353 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccctgagcttgacaatgatc 439 || |||| ||||| |||||||||| |||||||| | |||||| ||| || ||||||| Sbjct: 354 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatc 413 Query: 440 cctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaag 499 |||||||||| |||||||||||| |||| |||||| ||||||||||| || || |||| Sbjct: 414 cctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaag 473 Query: 500 atgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggaggg 558 | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 474 acttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagga 532 Query: 559 aatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaag 618 || |||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 533 aaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaag 592 Query: 619 gaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtgtac 678 ||||||||||||||| |||||||||||||||||||||| ||||| || || ||||||||| Sbjct: 593 gaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtac 652 Query: 679 atccatattatcagaggggaggagctgtaccgccttgcgagggactacactagatatctg 738 |||||||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 653 atccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatctt 712 Query: 739 gttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagtttctca 798 ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| Sbjct: 713 gttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctca 772 Query: 799 gagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccacttcg 858 |||| || | |||| || ||||| || ||||| | ||||||||| || |||| || Sbjct: 773 gagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctcc 832 Query: 859 gaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcaga 918 |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || Sbjct: 833 aaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccga 892 Query: 919 gggaattggcgtccacatgcacagaagtcttagttc 954 || |||||||| || ||||| ||| ||||||||||| Sbjct: 893 ggaaattggcgcccgcatgcgcaggagtcttagttc 928
>dbj|AK101400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037F09, full insert sequence Length = 1272 Score = 476 bits (240), Expect = e-131 Identities = 539/636 (84%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 274 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 333 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccctgagcttgacaatgatc 439 || |||| ||||| |||||||||| |||||||| | |||||| ||| || ||||||| Sbjct: 334 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatc 393 Query: 440 cctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaag 499 |||||||||| |||||||||||| |||| |||||| ||||||||||| || || |||| Sbjct: 394 cctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaag 453 Query: 500 atgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggaggg 558 | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 454 acttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagga 512 Query: 559 aatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaag 618 || |||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 513 aaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaag 572 Query: 619 gaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtgtac 678 ||||||||||||||| |||||||||||||||||||||| ||||| || || ||||||||| Sbjct: 573 gaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtac 632 Query: 679 atccatattatcagaggggaggagctgtaccgccttgcgagggactacactagatatctg 738 |||||||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 633 atccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatctt 692 Query: 739 gttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagtttctca 798 ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| Sbjct: 693 gttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctca 752 Query: 799 gagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccacttcg 858 |||| || | |||| || ||||| || ||||| | ||||||||| || |||| || Sbjct: 753 gagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctcc 812 Query: 859 gaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcaga 918 |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || Sbjct: 813 aaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccga 872 Query: 919 gggaattggcgtccacatgcacagaagtcttagttc 954 || |||||||| || ||||| ||| ||||||||||| Sbjct: 873 ggaaattggcgcccgcatgcgcaggagtcttagttc 908
>dbj|AK060085.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F03, full insert sequence Length = 1037 Score = 476 bits (240), Expect = e-131 Identities = 539/636 (84%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 287 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 346 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccctgagcttgacaatgatc 439 || |||| ||||| |||||||||| |||||||| | |||||| ||| || ||||||| Sbjct: 347 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatc 406 Query: 440 cctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaag 499 |||||||||| |||||||||||| |||| |||||| ||||||||||| || || |||| Sbjct: 407 cctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaag 466 Query: 500 atgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggaggg 558 | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 467 acttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagga 525 Query: 559 aatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaag 618 || |||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 526 aaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaag 585 Query: 619 gaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtgtac 678 ||||||||||||||| |||||||||||||||||||||| ||||| || || ||||||||| Sbjct: 586 gaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtac 645 Query: 679 atccatattatcagaggggaggagctgtaccgccttgcgagggactacactagatatctg 738 |||||||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 646 atccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatctt 705 Query: 739 gttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagtttctca 798 ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| Sbjct: 706 gttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctca 765 Query: 799 gagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccacttcg 858 |||| || | |||| || ||||| || ||||| | ||||||||| || |||| || Sbjct: 766 gagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctcc 825 Query: 859 gaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcaga 918 |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || Sbjct: 826 aaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccga 885 Query: 919 gggaattggcgtccacatgcacagaagtcttagttc 954 || |||||||| || ||||| ||| ||||||||||| Sbjct: 886 ggaaattggcgcccgcatgcgcaggagtcttagttc 921
>dbj|AK058232.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-C02, full insert sequence Length = 1393 Score = 476 bits (240), Expect = e-131 Identities = 539/636 (84%), Gaps = 2/636 (0%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 294 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 353 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccctgagcttgacaatgatc 439 || |||| ||||| |||||||||| |||||||| | |||||| ||| || ||||||| Sbjct: 354 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatc 413 Query: 440 cctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaag 499 |||||||||| |||||||||||| |||| |||||| ||||||||||| || || |||| Sbjct: 414 cctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaag 473 Query: 500 atgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggaggg 558 | || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 474 acttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagga 532 Query: 559 aatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaag 618 || |||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct: 533 aaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaag 592 Query: 619 gaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtgtac 678 ||||||||||||||| |||||||||||||||||||||| ||||| || || ||||||||| Sbjct: 593 gaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtac 652 Query: 679 atccatattatcagaggggaggagctgtaccgccttgcgagggactacactagatatctg 738 |||||||| |||||||| ||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 653 atccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatctt 712 Query: 739 gttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagtttctca 798 ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| Sbjct: 713 gttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctca 772 Query: 799 gagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccacttcg 858 |||| || | |||| || ||||| || ||||| | ||||||||| || |||| || Sbjct: 773 gagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctcc 832 Query: 859 gaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcaga 918 |||||| ||||||||||||||||||||||||||||||||||||||||| || ||| || Sbjct: 833 aaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccga 892 Query: 919 gggaattggcgtccacatgcacagaagtcttagttc 954 || |||||||| || ||||| ||| ||||||||||| Sbjct: 893 ggaaattggcgcccgcatgcgcaggagtcttagttc 928
>gb|AY105069.1| Zea mays PCO099796 mRNA sequence Length = 802 Score = 283 bits (143), Expect = 7e-73 Identities = 227/255 (89%) Strand = Plus / Plus Query: 526 ctgagagaacaagcatctggtggaggtggagggaatggaaacaggcgtggaggcaatggt 585 |||||||||||||| ||||||||||| |||||||||| || | |||||||||| |||| Sbjct: 96 ctgagagaacaagcgtctggtggaggcagagggaatgggaatcgccgtggaggcagtggt 155 Query: 586 ggttccggtggcccagaagatgaatcattcaaggaatcattggatgaagtagtccaagtt 645 ||||| ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||| Sbjct: 156 ggttctggtggcccagatgatgaatcgttcaaggaaacattggatgaagtagtgcaagtt 215 Query: 646 atcttagcaactgttgcttttatacttgtgtacatccatattatcagaggggaggagctg 705 |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 216 atcttagccactgttgctttcatacttgtgtacatccacataatcagaggggaggagctt 275 Query: 706 taccgccttgcgagggactacactagatatctggttaccggtaagcgaactgcccggctg 765 ||||| ||||| ||||||||||| |||||||| || ||||||||| | |||||||| ||| Sbjct: 276 taccgtcttgccagggactacaccagatatctcgtcaccggtaagaggactgcccgactg 335 Query: 766 aagcgctccatgcaa 780 ||||| |||||||| Sbjct: 336 aagcgtgccatgcaa 350 Score = 75.8 bits (38), Expect = 3e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 868 tggtggcaacagcctcaaaagtttgttcatcttatggaggagctttgcagagggaattgg 927 ||||||||||||||||| || ||||| ||| || ||||||| |||||||| || || ||| Sbjct: 438 tggtggcaacagcctcagaaatttgtgcattttgtggaggacctttgcaggggaaactgg 497 Query: 928 cgtccacatgcacagaagtcttagtt 953 ||||| ||||| ||| |||||||||| Sbjct: 498 cgtccccatgctcaggagtcttagtt 523 Score = 56.0 bits (28), Expect = 3e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 453 tttgaagaaggctatggctgatgcaaaaaagccacgacccatacaaga 500 ||||||||| ||| ||||||||||||||||||| || |||||||||| Sbjct: 23 tttgaagaaagctgtggctgatgcaaaaaagccccgttccatacaaga 70
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 202 bits (102), Expect = 2e-48 Identities = 206/238 (86%), Gaps = 2/238 (0%) Strand = Plus / Plus Query: 439 ccctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaa 498 ||||||||||| |||||||||||| |||| |||||| ||||||||||| || || ||| Sbjct: 23766976 ccctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaa 23767035 Query: 499 gatgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggagg 557 || || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 23767036 gacttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagg 23767094 Query: 558 gaatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaa 617 || |||| | |||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct: 23767095 aaaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaa 23767154 Query: 618 ggaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtg 675 |||||||||||||||| |||||||||||||||||||||| ||||| || || |||||| Sbjct: 23767155 ggaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtg 23767212 Score = 198 bits (100), Expect = 3e-47 Identities = 235/280 (83%) Strand = Plus / Plus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct: 23767600 gtacatccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagata 23767659 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagttt 794 ||| ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||| Sbjct: 23767660 tcttgttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaattt 23767719 Query: 795 ctcagagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccac 854 |||||||| || | |||| || ||||| || ||||| | ||||||||| || |||| Sbjct: 23767720 ctcagagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccac 23767779 Query: 855 ttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttg 914 || |||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 23767780 ctccaaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctg 23767839 Query: 915 cagagggaattggcgtccacatgcacagaagtcttagttc 954 | |||| |||||||| || ||||| ||| ||||||||||| Sbjct: 23767840 ccgaggaaattggcgcccgcatgcgcaggagtcttagttc 23767879 Score = 85.7 bits (43), Expect = 3e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 23766210 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 23766269 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccc 422 || |||| ||||| |||||||||| |||||||| | |||||| Sbjct: 23766270 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaaccc 23766312
>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1058_F07 Length = 95841 Score = 202 bits (102), Expect = 2e-48 Identities = 206/238 (86%), Gaps = 2/238 (0%) Strand = Plus / Plus Query: 439 ccctttatggatcatttgaagaaggctatggctgatgcaaaaaagccacgacccatacaa 498 ||||||||||| |||||||||||| |||| |||||| ||||||||||| || || ||| Sbjct: 77560 ccctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaa 77619 Query: 499 gatgtgttgaaagagaaatttagc-aagctgagagaacaagcatctggtggaggtggagg 557 || || ||||||| | | |||| |||||||||||||||| |||||||||||||||||| Sbjct: 77620 gacttgctgaaaga-acagatagctaagctgagagaacaaggatctggtggaggtggagg 77678 Query: 558 gaatggaaacaggcgtggaggcaatggtggttccggtggcccagaagatgaatcattcaa 617 || |||| | |||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct: 77679 aaaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaa 77738 Query: 618 ggaatcattggatgaagtagtccaagttatcttagcaactgttgcttttatacttgtg 675 |||||||||||||||| |||||||||||||||||||||| ||||| || || |||||| Sbjct: 77739 ggaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtg 77796 Score = 198 bits (100), Expect = 3e-47 Identities = 235/280 (83%) Strand = Plus / Plus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct: 78184 gtacatccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagata 78243 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatgcaacaatggcgcagttt 794 ||| ||||| || ||||| ||||| ||| |||| || |||||||| ||||||||| ||| Sbjct: 78244 tcttgttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaattt 78303 Query: 795 ctcagagaaattcacacaaaacgagggctctcaggaagagcggtatgaaaggccaaccac 854 |||||||| || | |||| || ||||| || ||||| | ||||||||| || |||| Sbjct: 78304 ctcagagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccac 78363 Query: 855 ttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctttg 914 || |||||| ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 78364 ctccaaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctg 78423 Query: 915 cagagggaattggcgtccacatgcacagaagtcttagttc 954 | |||| |||||||| || ||||| ||| ||||||||||| Sbjct: 78424 ccgaggaaattggcgcccgcatgcgcaggagtcttagttc 78463 Score = 85.7 bits (43), Expect = 3e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 320 gatttcgcaagcttgataagcatatctacccacgacttgttcttgttgctgctagccaca 379 |||||| ||||||| | ||||| | ||||| |||||||||||||||||||||||||| | Sbjct: 76794 gatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccaga 76853 Query: 380 caaggcttactcctgtatgtgcctcaagtggaaaagggaaccc 422 || |||| ||||| |||||||||| |||||||| | |||||| Sbjct: 76854 aaaagcttcctcctctatgtgcctcgagtggaaaggtgaaccc 76896
>emb|CT829934.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M07, full insert sequence Length = 1178 Score = 123 bits (62), Expect = 1e-24 Identities = 155/186 (83%) Strand = Plus / Plus Query: 592 ggtggcccagaagatgaatcattcaaggaatcattggatgaagtagtccaagttatctta 651 |||||| |||| || ||||| || | ||| ||||| ||||| | ||||||||| | || Sbjct: 590 ggtggctcagaggacgaatctttgacggagtcattatatgaaatggtccaagttttgttg 649 Query: 652 gcaactgttgcttttatacttgtgtacatccatattatcagaggggaggagctgtaccgc 711 |||||| |||| |||||||| ||||||||||||| || ||||| |||||| | |||||| Sbjct: 650 gcaactattgcctttatactcatgtacatccatataataagaggagaggagttataccgc 709 Query: 712 cttgcgagggactacactagatatctggttaccggtaagcgaactgcccggctgaagcgc 771 ||||||||||||||||||||||| |||||||| |||||| ||||| || | ||||| ||| Sbjct: 710 cttgcgagggactacactagatacctggttactggtaagagaacttccagactgaaacgc 769 Query: 772 tccatg 777 ||||| Sbjct: 770 gccatg 775 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 194 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 249 Score = 58.0 bits (29), Expect = 7e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 345 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 404 Query: 406 agtggaaaagggaaccctgagcttgacaatgatccct 442 ||||| ||||| ||| |||||| || ||||||||||| Sbjct: 405 agtgggaaaggaaactctgagcgtgtcaatgatccct 441 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 848 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 907 Query: 913 tgcagagg 920 | |||||| Sbjct: 908 tacagagg 915
>ref|NM_001059718.1| Oryza sativa (japonica cultivar-group) Os04g0493300 (Os04g0493300) mRNA, partial cds Length = 1518 Score = 123 bits (62), Expect = 1e-24 Identities = 155/186 (83%) Strand = Plus / Plus Query: 592 ggtggcccagaagatgaatcattcaaggaatcattggatgaagtagtccaagttatctta 651 |||||| |||| || ||||| || | ||| ||||| ||||| | ||||||||| | || Sbjct: 625 ggtggctcagaggacgaatctttgacggagtcattatatgaaatggtccaagttttgttg 684 Query: 652 gcaactgttgcttttatacttgtgtacatccatattatcagaggggaggagctgtaccgc 711 |||||| |||| |||||||| ||||||||||||| || ||||| |||||| | |||||| Sbjct: 685 gcaactattgcctttatactcatgtacatccatataataagaggagaggagttataccgc 744 Query: 712 cttgcgagggactacactagatatctggttaccggtaagcgaactgcccggctgaagcgc 771 ||||||||||||||||||||||| |||||||| |||||| ||||| || | ||||| ||| Sbjct: 745 cttgcgagggactacactagatacctggttactggtaagagaacttccagactgaaacgc 804 Query: 772 tccatg 777 ||||| Sbjct: 805 gccatg 810 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 228 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 283 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 379 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 438 Query: 406 agtggaaaagggaaccctgagcttgacaatgatccctt 443 ||||| ||||| ||| |||||| || |||||||||||| Sbjct: 439 agtgggaaaggaaactctgagcgtgtcaatgatccctt 476 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 883 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 942 Query: 913 tgcagagg 920 | |||||| Sbjct: 943 tacagagg 950
>dbj|AK064114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H12, full insert sequence Length = 1519 Score = 123 bits (62), Expect = 1e-24 Identities = 155/186 (83%) Strand = Plus / Plus Query: 592 ggtggcccagaagatgaatcattcaaggaatcattggatgaagtagtccaagttatctta 651 |||||| |||| || ||||| || | ||| ||||| ||||| | ||||||||| | || Sbjct: 626 ggtggctcagaggacgaatctttgacggagtcattatatgaaatggtccaagttttgttg 685 Query: 652 gcaactgttgcttttatacttgtgtacatccatattatcagaggggaggagctgtaccgc 711 |||||| |||| |||||||| ||||||||||||| || ||||| |||||| | |||||| Sbjct: 686 gcaactattgcctttatactcatgtacatccatataataagaggagaggagttataccgc 745 Query: 712 cttgcgagggactacactagatatctggttaccggtaagcgaactgcccggctgaagcgc 771 ||||||||||||||||||||||| |||||||| |||||| ||||| || | ||||| ||| Sbjct: 746 cttgcgagggactacactagatacctggttactggtaagagaacttccagactgaaacgc 805 Query: 772 tccatg 777 ||||| Sbjct: 806 gccatg 811 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 229 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 284 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 380 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 439 Query: 406 agtggaaaagggaaccctgagcttgacaatgatccctt 443 ||||| ||||| ||| |||||| || |||||||||||| Sbjct: 440 agtgggaaaggaaactctgagcgtgtcaatgatccctt 477 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 884 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 943 Query: 913 tgcagagg 920 | |||||| Sbjct: 944 tacagagg 951
>dbj|AK062853.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A06, full insert sequence Length = 1185 Score = 123 bits (62), Expect = 1e-24 Identities = 155/186 (83%) Strand = Plus / Plus Query: 592 ggtggcccagaagatgaatcattcaaggaatcattggatgaagtagtccaagttatctta 651 |||||| |||| || ||||| || | ||| ||||| ||||| | ||||||||| | || Sbjct: 597 ggtggctcagaggacgaatctttgacggagtcattatatgaaatggtccaagttttgttg 656 Query: 652 gcaactgttgcttttatacttgtgtacatccatattatcagaggggaggagctgtaccgc 711 |||||| |||| |||||||| ||||||||||||| || ||||| |||||| | |||||| Sbjct: 657 gcaactattgcctttatactcatgtacatccatataataagaggagaggagttataccgc 716 Query: 712 cttgcgagggactacactagatatctggttaccggtaagcgaactgcccggctgaagcgc 771 ||||||||||||||||||||||| |||||||| |||||| ||||| || | ||||| ||| Sbjct: 717 cttgcgagggactacactagatacctggttactggtaagagaacttccagactgaaacgc 776 Query: 772 tccatg 777 ||||| Sbjct: 777 gccatg 782 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 200 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 255 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 351 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 410 Query: 406 agtggaaaagggaaccctgagcttgacaatgatccctt 443 ||||| ||||| ||| |||||| || |||||||||||| Sbjct: 411 agtgggaaaggaaactctgagcgtgtcaatgatccctt 448 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 855 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 914 Query: 913 tgcagagg 920 | |||||| Sbjct: 915 tacagagg 922
>emb|CR855187.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103O01, complete sequence Length = 105035 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 18196 gtacatccatataataagaggagaggagttataccgccttgcgagggactacactagata 18137 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatg 777 |||||||| |||||| ||||| || | ||||| ||| ||||| Sbjct: 18136 cctggttactggtaagagaacttccagactgaaacgcgccatg 18094 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 20180 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 20125 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 18021 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 17962 Query: 913 tgcagagg 920 | |||||| Sbjct: 17961 tacagagg 17954 Score = 50.1 bits (25), Expect = 0.018 Identities = 76/93 (81%) Strand = Plus / Minus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 20029 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 19970 Query: 406 agtggaaaagggaaccctgagcttgacaatgat 438 ||||| ||||| ||| |||||| || ||||||| Sbjct: 19969 agtgggaaaggaaactctgagcgtgtcaatgat 19937
>emb|AL512542.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0522A01, complete sequence Length = 97077 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 82296 gtacatccatataataagaggagaggagttataccgccttgcgagggactacactagata 82237 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatg 777 |||||||| |||||| ||||| || | ||||| ||| ||||| Sbjct: 82236 cctggttactggtaagagaacttccagactgaaacgcgccatg 82194 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 84280 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 84225 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 82121 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 82062 Query: 913 tgcagagg 920 | |||||| Sbjct: 82061 tacagagg 82054 Score = 50.1 bits (25), Expect = 0.018 Identities = 76/93 (81%) Strand = Plus / Minus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 84129 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 84070 Query: 406 agtggaaaagggaaccctgagcttgacaatgat 438 ||||| ||||| ||| |||||| || ||||||| Sbjct: 84069 agtgggaaaggaaactctgagcgtgtcaatgat 84037
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 24643309 gtacatccatataataagaggagaggagttataccgccttgcgagggactacactagata 24643250 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatg 777 |||||||| |||||| ||||| || | ||||| ||| ||||| Sbjct: 24643249 cctggttactggtaagagaacttccagactgaaacgcgccatg 24643207 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 24645294 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 24645239 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 24643134 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 24643075 Query: 913 tgcagagg 920 | |||||| Sbjct: 24643074 tacagagg 24643067 Score = 50.1 bits (25), Expect = 0.018 Identities = 76/93 (81%) Strand = Plus / Minus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 24645143 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 24645084 Query: 406 agtggaaaagggaaccctgagcttgacaatgat 438 ||||| ||||| ||| |||||| || ||||||| Sbjct: 24645083 agtgggaaaggaaactctgagcgtgtcaatgat 24645051
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 101 bits (51), Expect = 5e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 675 gtacatccatattatcagaggggaggagctgtaccgccttgcgagggactacactagata 734 |||||||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 32832 gtacatccatataataagaggagaggagttataccgccttgcgagggactacactagata 32773 Query: 735 tctggttaccggtaagcgaactgcccggctgaagcgctccatg 777 |||||||| |||||| ||||| || | ||||| ||| ||||| Sbjct: 32772 cctggttactggtaagagaacttccagactgaaacgcgccatg 32730 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 189 catgagctacttccaagctacaacttgcaagcctcatactgggctcattgtggaca 244 ||||||||| ||||| |||||||| | ||||||||||| |||| |||||||||||| Sbjct: 34817 catgagctatttccaggctacaacatacaagcctcataatgggatcattgtggaca 34762 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 853 acttcggaaccaatgtggtggcaacagcctcaaaagtttgttcatcttatggaggagctt 912 ||||| ||||||||||||||||| ||||| | ||||||||| |||| || ||||| ||| Sbjct: 32657 acttctgaaccaatgtggtggcagcagcccctaaagtttgtccatcgcattgaggaactt 32598 Query: 913 tgcagagg 920 | |||||| Sbjct: 32597 tacagagg 32590 Score = 50.1 bits (25), Expect = 0.018 Identities = 76/93 (81%) Strand = Plus / Minus Query: 346 tacccacgacttgttcttgttgctgctagccacacaaggcttactcctgtatgtgcctca 405 |||||| | ||| |||||||||||||| |||| | ||| || |||||| | ||||||| Sbjct: 34666 tacccaaggcttcttcttgttgctgcttgccataacaggattggtcctgtgtatgcctca 34607 Query: 406 agtggaaaagggaaccctgagcttgacaatgat 438 ||||| ||||| ||| |||||| || ||||||| Sbjct: 34606 agtgggaaaggaaactctgagcgtgtcaatgat 34574
>emb|AL512326.25| Human DNA sequence from clone RP11-345I18 on chromosome 1 Contains the 5' end of the ABL2 gene for v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene), a ubiquinol-cytochrome c reductase (6.4kD) subunit (UQCR) pseudogene, a pseudogene similar to mouse SET translocation, a eukaryotic translation initiation factor 4A, isoform 1 pseudogene, a UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 (B3GALT3) pseudogene, a cytochrome c oxidase subunit Vb (COX5B) pseudogene, the 5' end of the SOAT1 gene for sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1, complete sequence Length = 187270 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Plus Query: 662 cttttatacttgtgtacatccat 684 ||||||||||||||||||||||| Sbjct: 149734 cttttatacttgtgtacatccat 149756
>gb|AY106874.1| Zea mays PCO131340 mRNA sequence Length = 508 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Plus Query: 190 atgagctacttccaagctacaacttgcaagcctca 224 |||||| |||||||||| || |||||||||||||| Sbjct: 251 atgagcaacttccaagccactacttgcaagcctca 285 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 384 gcttactcctgtatgtgcctcaagtggaaaagg 416 ||||||| |||||||||||| |||||| ||||| Sbjct: 431 gcttacttctgtatgtgccttaagtgggaaagg 463
>gb|AC187504.2| Rhesus macaque BAC clone CH250-41H12 from chromosome unknown, complete sequence Length = 164721 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 gggtcttgggaagacctgcag 275 ||||||||||||||||||||| Sbjct: 10769 gggtcttgggaagacctgcag 10749
>emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chromosome 9, complete sequence Length = 193947 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 tccactgtccttttttgacac 981 ||||||||||||||||||||| Sbjct: 125515 tccactgtccttttttgacac 125535
>gb|AC146910.16| Medicago truncatula clone mth2-59i21, complete sequence Length = 109724 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 atttagcaagctgagagaaca 536 ||||||||||||||||||||| Sbjct: 89262 atttagcaagctgagagaaca 89282
>gb|AC130651.2| Homo sapiens chromosome 16 clone CTA-972D3, complete sequence Length = 168190 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 ggcttactcctgtatgtgcctcaag 407 |||||||||||| |||||||||||| Sbjct: 29026 ggcttactcctgcatgtgcctcaag 29050
>gb|AC024120.5| Homo sapiens chromosome 16 clone CTA-1000C7, complete sequence Length = 59150 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 383 ggcttactcctgtatgtgcctcaag 407 |||||||||||| |||||||||||| Sbjct: 44062 ggcttactcctgcatgtgcctcaag 44086
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 tcgcctctttcccttcttctc 46 ||||||||||||||||||||| Sbjct: 22356858 tcgcctctttcccttcttctc 22356878
>emb|AL591708.10| Human DNA sequence from clone RP13-634N5 on chromosome Xq21.1-21.22, complete sequence Length = 93667 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 aaatttagcaagctgagagaa 534 ||||||||||||||||||||| Sbjct: 53790 aaatttagcaagctgagagaa 53810
>emb|AL513533.15| Human DNA sequence from clone RP11-341B24 on chromosome 10 Contains the 3' end of the LIPA gene for lipase A lysosomal acid cholesterol esterase (Wolman disease), a novel zinc finger pseudogene and the CH25 gene for cholesterol 25-hydroxylase, complete sequence Length = 148151 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 agctacttccaagctacaact 213 ||||||||||||||||||||| Sbjct: 50857 agctacttccaagctacaact 50837
>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the 5' end of the FLT3 gene for fms-related tyrosine kinase 3, a novel gene, a eukaryotic translation elongation factor 1 alpha 1 pseudogene, a novel pseudogene and two CpG islands, complete sequence Length = 194520 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 gggtcttgggaagacctgcag 275 ||||||||||||||||||||| Sbjct: 2948 gggtcttgggaagacctgcag 2968
>gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome 9, complete sequence Length = 156478 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 961 tccactgtccttttttgacac 981 ||||||||||||||||||||| Sbjct: 100887 tccactgtccttttttgacac 100907
>gb|AC096777.1| Mus musculus clone RP23-106L19, complete sequence Length = 209671 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1103 tatttttgtctctggtttgtt 1123 ||||||||||||||||||||| Sbjct: 144448 tatttttgtctctggtttgtt 144468
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 646 atcttagcaactgttgctttt 666 ||||||||||||||||||||| Sbjct: 933696 atcttagcaactgttgctttt 933716
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 856 tcggaaccaatgtggtggcaa 876 ||||||||||||||||||||| Sbjct: 69655 tcggaaccaatgtggtggcaa 69675
>emb|BX322608.21| Zebrafish DNA sequence from clone DKEYP-38G8 in linkage group 4, complete sequence Length = 161099 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 492 catacaagatgtgttgaaagagaaa 516 ||||||||||||||||| ||||||| Sbjct: 16933 catacaagatgtgttgacagagaaa 16909
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 tcgcctctttcccttcttctc 46 ||||||||||||||||||||| Sbjct: 54128 tcgcctctttcccttcttctc 54148
>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence Length = 228713 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 660 tgcttttatacttgtgtacat 680 ||||||||||||||||||||| Sbjct: 213624 tgcttttatacttgtgtacat 213644
>gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, complete sequence Length = 176680 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 tgagagaacaagcatctggtg 547 ||||||||||||||||||||| Sbjct: 84103 tgagagaacaagcatctggtg 84123
>gb|AC040163.3|AC040163 Homo sapiens chromosome 16 clone RP11-1M1, complete sequence Length = 176845 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 602 aagatgaatcattcaaggaatcatt 626 |||||||||||||||| |||||||| Sbjct: 45946 aagatgaatcattcaatgaatcatt 45970
>gb|U91323.1|HUU91323 Human Chromosome 16 BAC clone CIT987SK-A-972D3, complete sequence Length = 167880 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 383 ggcttactcctgtatgtgcctcaag 407 |||||||||||| |||||||||||| Sbjct: 138854 ggcttactcctgcatgtgcctcaag 138830 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 215,603,533 Number of extensions: 12066620 Number of successful extensions: 244613 Number of sequences better than 10.0: 37 Number of HSP's gapped: 244598 Number of HSP's successfully gapped: 75 Length of query: 1156 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1133 Effective length of database: 18,503,978,556 Effective search space: 20965007703948 Effective search space used: 20965007703948 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)