ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9FWT5:RIP3_ORYSJ Ripening-related protein 3 precursor - Oryza s... 31 6.5
2Q06542:Y4090_STRCO Uncharacterized protein SCO4090 - Streptomyce... 31 8.5
3P53248:PEX8_YEAST Peroxisomal biogenesis factor 8 - Saccharomyce... 31 8.5

>Q9FWT5:RIP3_ORYSJ Ripening-related protein 3 precursor - Oryza sativa subsp. japonica|
           (Rice)
          Length = 213
 Score = 31.2 bits (69), Expect = 6.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 739 PLRDLLQSAQCRNTSAVA*NSCCCNSDTQS-CFVDGI 632
           P R LLQS+ C+ + A+   S  CN+D  S C  DG+
Sbjct: 44  PHRSLLQSSSCQPSGAITGTSGDCNADNGSECCQDGV 80



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>Q06542:Y4090_STRCO Uncharacterized protein SCO4090 - Streptomyces coelicolor|
          Length = 283

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
 Frame = -3

Query: 474 RLYRPLAS----------RIRKRPG-------LSCSHVSFEPTQQHHLPIHANGQCFVTE 346
           R+Y PLA+          R  +RPG       L  S     PT    +P+H +   FVTE
Sbjct: 16  RVYEPLAAFPDEERAHWTRYARRPGRPSYQDELRRSLADLLPTPPVAVPVHESADAFVTE 75

Query: 345 QHHVPCIPP 319
              V C+ P
Sbjct: 76  VDGVVCVCP 84



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>P53248:PEX8_YEAST Peroxisomal biogenesis factor 8 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 589

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 276 LSIINFKRKTEKVVVVECRGHDAARLQNIDHLHGWEDDVVGLVQKKHGNKKVL 434
           + I+N K   +K V++EC     A + N  HL GW +  + L+     NKK+L
Sbjct: 508 IRIVNVKNPEKKNVLIECLIVQIAFINNPHHLIGWLNICLQLINTH--NKKLL 558


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 145,382,465
Number of extensions: 2904746
Number of successful extensions: 8063
Number of sequences better than 10.0: 3
Number of HSP's gapped: 8055
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 206
Effective length of database: 69,691,104
Effective search space: 14356367424
Effective search space used: 14356367424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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