ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf96a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os06g50510:12006.t04735:unspliced-genomic START domain c... 33 2.7
2LOC_Os02g05480:12002.t00446:unspliced-genomic OsMPK14 - puta... 33 2.7
3LOC_Os10g07290:12010.t00588:unspliced-genomic glucan endo-1,... 32 5.0
4LOC_Os12g13010:12012.t01169:unspliced-genomic transposon pro... 29 6.5
5LOC_Os02g17760:12002.t01570:unspliced-genomic cytochrome P45... 31 6.9
6LOC_Os08g29710:12008.t02724:unspliced-genomic beta-1,3-galac... 31 6.9
7LOC_Os08g23360:12008.t02108:unspliced-genomic signal recogni... 31 6.9
8LOC_Os08g04920:12008.t00386:unspliced-genomic expressed protein 31 6.9
9LOC_Os05g45950:12005.t04083:unspliced-genomic outer mitochon... 26 7.2
10LOC_Os11g29000:12011.t02510:unspliced-genomic pollen signall... 31 9.5
11LOC_Os06g32540:12006.t02952:unspliced-genomic hypothetical p... 31 9.5
12LOC_Os05g05780:12005.t00468:unspliced-genomic chromatin remo... 31 9.5

>LOC_Os06g50510:12006.t04735:unspliced-genomic START domain containing protein|
          Length = 8759
 Score = 32.7 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3 / -1

                                          
Query: 177  PWVAEDQTHRTSHCRQRCSIRAFPRSWKLD 266
            PW +  Q  R + CR  CS+ +  R+WK D
Sbjct: 7022 PWSSPQQHSRCN*CR*SCSMASLLRAWKQD 6933



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>LOC_Os02g05480:12002.t00446:unspliced-genomic OsMPK14 - putative MAPK based on amino acid sequence homology,|
            expressed
          Length = 3384

 Score = 32.7 bits (65), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3 / +3

                                          
Query: 281  FFPQCIKLPAPRKSPNTAALPTVACPMCLI 192
            F+ +C  L  P++S +   L T+ CP+C+I
Sbjct: 2820 FYRRCSYLILPKESVSPRLLSTLTCPLCMI 2909



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>LOC_Os10g07290:12010.t00588:unspliced-genomic glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed|
          Length = 2529

 Score = 31.8 bits (63), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3 / +1

                                                      
Query: 303  PLLLLGFKGLSA*SICLIFKEHWSSATIYSVLAFDMFALLLM 428
            P ++ G K      ICL+   HWS A  +S+     F LL++
Sbjct: 1972 PAIMQGKKNFQWHMICLLLFPHWSFAPFWSLAEVFPFVLLVL 2097



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>LOC_Os12g13010:12012.t01169:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 4418

 Score = 29.5 bits (58), Expect(2) = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3 / -2

                                 
Query: 174  GPWVAEDQTHRTSHCRQRCSI 236
            GP ++  Q+H+  HC Q+C I
Sbjct: 1618 GPTISGLQSHKLKHCPQQCEI 1556



 Score = 23.5 bits (45), Expect(2) = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1 / -3

                                       
Query: 526  SSVKEIDHFLPTLTGARGSWPLVNIVY 606
            +SV ++ HF   +    G+  L NIVY
Sbjct: 1224 NSVHDVRHFFNQIFYHSGNTKLTNIVY 1144



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>LOC_Os02g17760:12002.t01570:unspliced-genomic cytochrome P450 71D8, putative, expressed|
          Length = 6687

 Score = 31.3 bits (62), Expect = 6.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3 / -2

                                                       
Query: 177  PWVAEDQTHRTSHCRQRCSIRAFPRSWKLDTLREKLLTRVKSP 305
            PW   + T R S   Q C + +F    +++++++K+  +  SP
Sbjct: 5423 PWCGLEATCRRSRSTQMCQMTSFGSGLRMESVQQKVPMKPNSP 5295



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>LOC_Os08g29710:12008.t02724:unspliced-genomic beta-1,3-galactosyltransferase sqv-2, putative, expressed|
          Length = 5945

 Score = 31.3 bits (62), Expect = 6.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2 / -2

                         
Query: 663 FFFFGLSQNCCLYL 622
           FFFF LSQ CCL L
Sbjct: 79  FFFFSLSQTCCLLL 38



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>LOC_Os08g23360:12008.t02108:unspliced-genomic signal recognition particle 68 kDa protein, putative, expressed|
          Length = 11937

 Score = 31.3 bits (62), Expect = 6.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2 / -1

                                  
Query: 344  HLFDL*GTLEFCYYLLGPSF*Y 409
            H  D+  TLE C YLL PSF*+
Sbjct: 1248 HFDDIIKTLEICQYLLCPSF*F 1183



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>LOC_Os08g04920:12008.t00386:unspliced-genomic expressed protein|
          Length = 6397

 Score = 31.3 bits (62), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2 / -3

                                   
Query: 557  RH*PGRGAAGLLLISCTSCTPIK 625
            R * G+G  GL+ I C SCT +K
Sbjct: 1988 RE*QGKGMQGLMSIFCNSCTSLK 1920



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>LOC_Os05g45950:12005.t04083:unspliced-genomic outer mitochondrial membrane protein porin, putative, expressed|
          Length = 3497

 Score = 26.3 bits (51), Expect(2) = 7.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3 / -2

                                                
Query: 198 THRTSHCRQRCSIRAFPRSWKLDTLREKLLTRVKSPL 308
           TH  +HC  +CS +  P   K  T   ++L + ++ +
Sbjct: 532 THTHTHCPPKCSYQQTPTRSKPKTKPNQILVKEQNKI 422



 Score = 26.3 bits (51), Expect(2) = 7.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2 / -2

                              
Query: 506 IEVICHSHQ*KK*TIFSRH 562
           I+ IC SHQ KK T  S+H
Sbjct: 310 IQEICKSHQKKKTTSVSKH 254



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>LOC_Os11g29000:12011.t02510:unspliced-genomic pollen signalling protein with adenylyl cyclase activity, putative,|
            expressed
          Length = 2985

 Score = 30.9 bits (61), Expect = 9.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3 / +3

                                 
Query: 177  PWVAEDQTHRTSHCRQRCSIR 239
            P V EDQTH  S C  RC  R
Sbjct: 2199 PRVGEDQTHPASECLYRCGRR 2261



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>LOC_Os06g32540:12006.t02952:unspliced-genomic hypothetical protein|
          Length = 430

 Score = 30.9 bits (61), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2 / +2

                                        
Query: 207 SDVSDLQQPRDPQSDSGISPINSTDGSAD 121
           SDV+DL  P DP + S + P    DG  D
Sbjct: 245 SDVNDLNPPEDPNNISVLHPAFIDDGDID 331



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>LOC_Os05g05780:12005.t00468:unspliced-genomic chromatin remodelling complex ATPase chain, putative, expressed|
          Length = 10457

 Score = 30.9 bits (61), Expect = 9.5
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -2 / -1

                                                                  
Query: 258 SSSEEKPEYCSAADSGLSDVSDLQQPRDPQSDSGISPINSTDGSADRAADCDSGA 94
           SSS   P  CS++ S  S          P  DS  S  ++   SA  +  C S +
Sbjct: 539 SSSSSSPAPCSSSTSSSSSSPSASASSSPTLDSSSSSSSTCSPSASPSTSCSSSS 375


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 222,699,037
Number of extensions: 3219205
Number of successful extensions: 11633
Number of sequences better than 10.0: 12
Length of query: 222
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 174
Effective length of database: 52,912,542
Effective search space: 9206782308
Effective search space used: 9206782308
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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