Clone Name | FLbaf98b09 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os10g34030:12010.t02705:unspliced-genomic zinc finger, C3HC4 type family protein, expressed| Length = 5949 Score = 81.3 bits (171), Expect(2) = 2e-31 Identities = 33/42 (78%), Positives = 34/42 (80%) Frame = +3 / +1 Query: 231 QTSETTGRGVSAEMAHVWNKAVDETLGRLVVYLSSRGW*FKH 356 Q SET R S E+AHVWNK VDETLGRLV YLSSRGW*FKH Sbjct: 5257 QPSETRSRTSSTELAHVWNKGVDETLGRLVAYLSSRGW*FKH 5382 Score = 79.4 bits (167), Expect(2) = 2e-31 Identities = 34/42 (80%), Positives = 37/42 (88%) Frame = +3 / +1 Query: 102 QERLLGFALGSVSMGGFVLHQRRSIYRSLADNDAVSGGASFS 227 QERLLGFALGSVSMGGFVLHQRR+IYRSLAD DA + + FS Sbjct: 3838 QERLLGFALGSVSMGGFVLHQRRAIYRSLADADAAAAPSPFS 3963 Score = 70.7 bits (148), Expect(3) = 4e-21 Identities = 31/40 (77%), Positives = 32/40 (80%) Frame = -1 / -2 Query: 355 CLNYHPRELRYTTSRPSVSSTALFHT*AISAETPLPVVSL 236 CLNYHPRELRY TSRP VSST LFHT*A S E L +VSL Sbjct: 5381 CLNYHPRELRYATSRPRVSSTPLFHT*ANSVELVLLLVSL 5262 Score = 51.5 bits (106), Expect(3) = 4e-21 Identities = 25/45 (55%), Positives = 27/45 (60%) Frame = -1 / -2 Query: 226 EKDAPPETASLSAXXXXXXXXXXRTKPPMETEPRANPRRRSCARM 92 EK AS SA RT PPMETEPRANPRRRSCA++ Sbjct: 3962 EKGDGAAAASASARER*MARRWWRTNPPMETEPRANPRRRSCAQI 3828 Score = 24.9 bits (48), Expect(3) = 4e-21 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -1 / -3 Query: 109 RSCARMLIIAMA 74 R+CARMLIIA A Sbjct: 3712 RTCARMLIIAAA 3677 Score = 62.0 bits (129), Expect(2) = 2e-15 Identities = 27/39 (69%), Positives = 28/39 (71%) Frame = -2 / -3 Query: 357 NA*ITIHES*DTQQAGQVSRPLPCSTREPSQLKLLYRWF 241 NA*ITIHES* QQ + S PLPCS REP QL L Y WF Sbjct: 5383 NA*ITIHES*GMQQVVRESHPLPCSIREPIQLSLFYFWF 5267 Score = 44.6 bits (91), Expect(2) = 2e-15 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = -3 / -1 Query: 158 EDETTHGDGAQGEPEEALL 102 EDE +HGDGAQGEPEEALL Sbjct: 3894 EDEPSHGDGAQGEPEEALL 3838 Score = 56.1 bits (116), Expect = 2e-07 Identities = 25/39 (64%), Positives = 27/39 (69%) Frame = +1 / +2 Query: 241 KPPVEEFQLRWLTCGTRQWTRHLAGLLCILALVDGNSSI 357 KP VE+ QL WLT GTR+W R LL ALVDGNSSI Sbjct: 5267 KPEVEQAQLNWLTYGTREWMRLSDDLLHTSALVDGNSSI 5383 Score = 53.3 bits (110), Expect = 1e-06 Identities = 23/39 (58%), Positives = 28/39 (71%) Frame = +2 / +3 Query: 242 NHR*RSFS*DGSRVEQGSGRDTWPACCVS*LSWMVIQAL 358 N +* +* GSR+EQGSG D+ CC+ LSWMVIQAL Sbjct: 5268 NQK*NKLN*IGSRMEQGSG*DSRTTCCIPQLSWMVIQAL 5384 Score = 43.7 bits (89), Expect = 0.001 Identities = 19/36 (52%), Positives = 25/36 (69%) Frame = -3 / -1 Query: 338 TRAKIHNKPAKCLVHCLVPHVSHLS*NSSTGGFACL 231 TRA++ NK ++ L+H LVP+VS S* ST GF L Sbjct: 5364 TRAEVCNKSSESLIHSLVPYVSQFS*ACSTSGFTRL 5257
>LOC_Os11g38900:12011.t03433:unspliced-genomic histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1,| putative, expressed Length = 5785 Score = 34.1 bits (68), Expect = 0.91 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = +2 / -2 Query: 371 YSLITRCCAKLRYMCSAISQYQWLIIMLSFAF 466 Y IT CC Y+CS + +W++++++ F Sbjct: 5118 YIYITLCCFWSYYLCSTLESSKWIVVLMNKYF 5023
>LOC_Os11g41110:12011.t03649:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 2633 Score = 31.8 bits (63), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +2 / -1 Query: 338 WMVIQALRVKHYSLITRCCAKLRYMCSAISQYQWL 442 W++I+ ++SL T+CCA ++ C++ Q L Sbjct: 2042 WVLIKLSLSFNFSLFTKCCADIQLKCNSFGCLQCL 1938
>LOC_Os09g27940:12009.t02472:unspliced-genomic aspartic proteinase nepenthesin-1 precursor, putative, expressed| Length = 3081 Score = 31.8 bits (63), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 / -1 Query: 151 KPPMETEPRANPRRRSCARMLIIAMAAGG 65 +PP PR+ RRR C+R A AA G Sbjct: 1155 RPPPRPAPRSTRRRRGCSRWRTAASAATG 1069
>LOC_Os06g40680:12006.t03763:unspliced-genomic conserved hypothetical protein| Length = 7321 Score = 31.8 bits (63), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +2 / -1 Query: 338 WMVIQALRVKHYSLITRCCAKLRYMCSAISQYQWL 442 W++I+ ++SL T+CCA ++ C++ Q L Sbjct: 7156 WVLIKLSLSFNFSLFTKCCADIQLKCNSFGCLQCL 7052
>LOC_Os05g04380:12005.t00334:unspliced-genomic peroxidase 1 precursor, putative, expressed| Length = 4974 Score = 31.8 bits (63), Expect = 4.5 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +2 / +1 Query: 365 KHYSLITRCCAKLRYMCSAISQYQWLIIMLSFAFKM 472 KHY+L+ L ++C SQ Q L+++L A M Sbjct: 1327 KHYALVVSLFPLLSFLCMGASQMQLLLMLL*LASNM 1434
>LOC_Os12g42130:12012.t03887:unspliced-genomic transparent testa 12 protein, putative, expressed| Length = 2553 Score = 30.9 bits (61), Expect = 8.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -3 / -1 Query: 338 TRAKIHNKPAKCLVHCLVPHVS 273 T K H +PA VHCL P +S Sbjct: 156 THPKTHRRPAMATVHCLFPPLS 91
>LOC_Os12g24500:12012.t02176:unspliced-genomic expressed protein| Length = 4677 Score = 30.9 bits (61), Expect = 8.4 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 / +2 Query: 480 RIIVRLDQWRLPATHC 527 +I+VR DQW LP T+C Sbjct: 1766 QILVRYDQWYLPLTYC 1813
>LOC_Os07g29160:12007.t02606:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 1325 Score = 30.9 bits (61), Expect = 8.4 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 / -3 Query: 456 LLLLKWAWRIIVRLDQWRLPATHCSPDVSWIQGLQP 563 L LL+W W+I DQ + T SPD S + P Sbjct: 528 LTLLRWGWQIFS*NDQRLVDTTQPSPDHSALTSFPP 421
>LOC_Os12g42600:12012.t03934:unspliced-genomic ubiquitin carboxyl-terminal hydrolase family protein, expressed| Length = 6364 Score = 30.9 bits (61), Expect = 8.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 / +1 Query: 14 RGKPKRKEETSQQSRRLAAGGHRD 85 + K K+K E SRR AA GHRD Sbjct: 61 KSKKKKKGEIPHASRRRAAPGHRD 132
>LOC_Os11g29260:12011.t02532:unspliced-genomic hypothetical protein| Length = 414 Score = 30.9 bits (61), Expect = 8.4 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -1 / -1 Query: 214 PPETASLSAXXXXXXXXXXRTKPPMETEPRANPRRRSCA 98 PP + SLSA T PP T A P RR+ A Sbjct: 219 PPPSTSLSAPTLVTEPRRAATGPPRRTATTAGPPRRAAA 103
>LOC_Os08g20750:12008.t01885:unspliced-genomic conserved hypothetical protein| Length = 1314 Score = 30.9 bits (61), Expect = 8.4 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = +1 / -2 Query: 214 AHPSPIRQAKPPVEEFQLRWLTCGTRQWTRHLAGL 318 A PS + A PP WLT GTR T HL L Sbjct: 977 ARPSLSKSASPPNRSPLFLWLTGGTRGPTCHLLPL 873
>LOC_Os03g34040:12003.t02992:unspliced-genomic 30S ribosomal protein S5, putative, expressed| Length = 4187 Score = 30.9 bits (61), Expect = 8.4 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 / -2 Query: 220 PSPIRQAKPPVEEFQLRWLTCGTRQWTRHLAGLLCILALVDGNSSIESEALLAD 381 PSP R ++ ++ Q++ T W H LLC+L + + I A++ D Sbjct: 3670 PSPARPSQLHLQLHQIQGKQAST*PWLLHSLHLLCLLCRTNQDEIILRIAIIVD 3509
>LOC_Os02g20930:12002.t01883:unspliced-genomic apoptosis inhibitor 5, putative, expressed| Length = 9729 Score = 30.9 bits (61), Expect = 8.4 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = -1 / -3 Query: 151 KPPMETEPRANPRRR 107 +PP +T+PR NPRRR Sbjct: 286 RPPSKTKPRQNPRRR 242
>LOC_Os01g21630:12001.t01900:unspliced-genomic carboxylic ester hydrolase, putative, expressed| Length = 6089 Score = 30.9 bits (61), Expect = 8.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 / +1 Query: 271 WLTCGTRQWTRHLAGLLCILALV 339 WL+C Q T HLA L+C+ +V Sbjct: 5338 WLSCSPEQGTFHLA*LVCVHVIV 5406 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 221,444,110 Number of extensions: 3500323 Number of successful extensions: 15370 Number of sequences better than 10.0: 15 Length of query: 202 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 154 Effective length of database: 52,912,542 Effective search space: 8148531468 Effective search space used: 8148531468 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)