ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf98b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os10g34030:12010.t02705:unspliced-genomic zinc finger, C... 81 2e-31
2LOC_Os11g38900:12011.t03433:unspliced-genomic histone-lysine... 34 0.91
3LOC_Os11g41110:12011.t03649:unspliced-genomic transposon pro... 32 4.5
4LOC_Os09g27940:12009.t02472:unspliced-genomic aspartic prote... 32 4.5
5LOC_Os06g40680:12006.t03763:unspliced-genomic conserved hypo... 32 4.5
6LOC_Os05g04380:12005.t00334:unspliced-genomic peroxidase 1 p... 32 4.5
7LOC_Os12g42130:12012.t03887:unspliced-genomic transparent te... 31 8.4
8LOC_Os12g24500:12012.t02176:unspliced-genomic expressed protein 31 8.4
9LOC_Os07g29160:12007.t02606:unspliced-genomic transposon pro... 31 8.4
10LOC_Os12g42600:12012.t03934:unspliced-genomic ubiquitin carb... 31 8.4
11LOC_Os11g29260:12011.t02532:unspliced-genomic hypothetical p... 31 8.4
12LOC_Os08g20750:12008.t01885:unspliced-genomic conserved hypo... 31 8.4
13LOC_Os03g34040:12003.t02992:unspliced-genomic 30S ribosomal ... 31 8.4
14LOC_Os02g20930:12002.t01883:unspliced-genomic apoptosis inhi... 31 8.4
15LOC_Os01g21630:12001.t01900:unspliced-genomic carboxylic est... 31 8.4

>LOC_Os10g34030:12010.t02705:unspliced-genomic zinc finger, C3HC4 type family protein, expressed|
          Length = 5949
 Score = 81.3 bits (171), Expect(2) = 2e-31
 Identities = 33/42 (78%), Positives = 34/42 (80%)
 Frame = +3 / +1

                                                      
Query: 231  QTSETTGRGVSAEMAHVWNKAVDETLGRLVVYLSSRGW*FKH 356
            Q SET  R  S E+AHVWNK VDETLGRLV YLSSRGW*FKH
Sbjct: 5257 QPSETRSRTSSTELAHVWNKGVDETLGRLVAYLSSRGW*FKH 5382



 Score = 79.4 bits (167), Expect(2) = 2e-31
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = +3 / +1

                                                      
Query: 102  QERLLGFALGSVSMGGFVLHQRRSIYRSLADNDAVSGGASFS 227
            QERLLGFALGSVSMGGFVLHQRR+IYRSLAD DA +  + FS
Sbjct: 3838 QERLLGFALGSVSMGGFVLHQRRAIYRSLADADAAAAPSPFS 3963



 Score = 70.7 bits (148), Expect(3) = 4e-21
 Identities = 31/40 (77%), Positives = 32/40 (80%)
 Frame = -1 / -2

                                                    
Query: 355  CLNYHPRELRYTTSRPSVSSTALFHT*AISAETPLPVVSL 236
            CLNYHPRELRY TSRP VSST LFHT*A S E  L +VSL
Sbjct: 5381 CLNYHPRELRYATSRPRVSSTPLFHT*ANSVELVLLLVSL 5262



 Score = 51.5 bits (106), Expect(3) = 4e-21
 Identities = 25/45 (55%), Positives = 27/45 (60%)
 Frame = -1 / -2

                                                         
Query: 226  EKDAPPETASLSAXXXXXXXXXXRTKPPMETEPRANPRRRSCARM 92
            EK      AS SA          RT PPMETEPRANPRRRSCA++
Sbjct: 3962 EKGDGAAAASASARER*MARRWWRTNPPMETEPRANPRRRSCAQI 3828



 Score = 24.9 bits (48), Expect(3) = 4e-21
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1 / -3

                        
Query: 109  RSCARMLIIAMA 74
            R+CARMLIIA A
Sbjct: 3712 RTCARMLIIAAA 3677



 Score = 62.0 bits (129), Expect(2) = 2e-15
 Identities = 27/39 (69%), Positives = 28/39 (71%)
 Frame = -2 / -3

                                                   
Query: 357  NA*ITIHES*DTQQAGQVSRPLPCSTREPSQLKLLYRWF 241
            NA*ITIHES*  QQ  + S PLPCS REP QL L Y WF
Sbjct: 5383 NA*ITIHES*GMQQVVRESHPLPCSIREPIQLSLFYFWF 5267



 Score = 44.6 bits (91), Expect(2) = 2e-15
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = -3 / -1

                               
Query: 158  EDETTHGDGAQGEPEEALL 102
            EDE +HGDGAQGEPEEALL
Sbjct: 3894 EDEPSHGDGAQGEPEEALL 3838



 Score = 56.1 bits (116), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 27/39 (69%)
 Frame = +1 / +2

                                                   
Query: 241  KPPVEEFQLRWLTCGTRQWTRHLAGLLCILALVDGNSSI 357
            KP VE+ QL WLT GTR+W R    LL   ALVDGNSSI
Sbjct: 5267 KPEVEQAQLNWLTYGTREWMRLSDDLLHTSALVDGNSSI 5383



 Score = 53.3 bits (110), Expect = 1e-06
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +2 / +3

                                                   
Query: 242  NHR*RSFS*DGSRVEQGSGRDTWPACCVS*LSWMVIQAL 358
            N +*   +* GSR+EQGSG D+   CC+  LSWMVIQAL
Sbjct: 5268 NQK*NKLN*IGSRMEQGSG*DSRTTCCIPQLSWMVIQAL 5384



 Score = 43.7 bits (89), Expect = 0.001
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -3 / -1

                                                
Query: 338  TRAKIHNKPAKCLVHCLVPHVSHLS*NSSTGGFACL 231
            TRA++ NK ++ L+H LVP+VS  S*  ST GF  L
Sbjct: 5364 TRAEVCNKSSESLIHSLVPYVSQFS*ACSTSGFTRL 5257



to top

>LOC_Os11g38900:12011.t03433:unspliced-genomic histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1,|
            putative, expressed
          Length = 5785

 Score = 34.1 bits (68), Expect = 0.91
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2 / -2

                                            
Query: 371  YSLITRCCAKLRYMCSAISQYQWLIIMLSFAF 466
            Y  IT CC    Y+CS +   +W++++++  F
Sbjct: 5118 YIYITLCCFWSYYLCSTLESSKWIVVLMNKYF 5023



to top

>LOC_Os11g41110:12011.t03649:unspliced-genomic transposon protein, putative, Ac/Ds sub-class|
          Length = 2633

 Score = 31.8 bits (63), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2 / -1

                                               
Query: 338  WMVIQALRVKHYSLITRCCAKLRYMCSAISQYQWL 442
            W++I+     ++SL T+CCA ++  C++    Q L
Sbjct: 2042 WVLIKLSLSFNFSLFTKCCADIQLKCNSFGCLQCL 1938



to top

>LOC_Os09g27940:12009.t02472:unspliced-genomic aspartic proteinase nepenthesin-1 precursor, putative, expressed|
          Length = 3081

 Score = 31.8 bits (63), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1 / -1

                                         
Query: 151  KPPMETEPRANPRRRSCARMLIIAMAAGG 65
            +PP    PR+  RRR C+R    A AA G
Sbjct: 1155 RPPPRPAPRSTRRRRGCSRWRTAASAATG 1069



to top

>LOC_Os06g40680:12006.t03763:unspliced-genomic conserved hypothetical protein|
          Length = 7321

 Score = 31.8 bits (63), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2 / -1

                                               
Query: 338  WMVIQALRVKHYSLITRCCAKLRYMCSAISQYQWL 442
            W++I+     ++SL T+CCA ++  C++    Q L
Sbjct: 7156 WVLIKLSLSFNFSLFTKCCADIQLKCNSFGCLQCL 7052



to top

>LOC_Os05g04380:12005.t00334:unspliced-genomic peroxidase 1 precursor, putative, expressed|
          Length = 4974

 Score = 31.8 bits (63), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2 / +1

                                                
Query: 365  KHYSLITRCCAKLRYMCSAISQYQWLIIMLSFAFKM 472
            KHY+L+      L ++C   SQ Q L+++L  A  M
Sbjct: 1327 KHYALVVSLFPLLSFLCMGASQMQLLLMLL*LASNM 1434



to top

>LOC_Os12g42130:12012.t03887:unspliced-genomic transparent testa 12 protein, putative, expressed|
          Length = 2553

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3 / -1

                                 
Query: 338 TRAKIHNKPAKCLVHCLVPHVS 273
           T  K H +PA   VHCL P +S
Sbjct: 156 THPKTHRRPAMATVHCLFPPLS 91



to top

>LOC_Os12g24500:12012.t02176:unspliced-genomic expressed protein|
          Length = 4677

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3 / +2

                            
Query: 480  RIIVRLDQWRLPATHC 527
            +I+VR DQW LP T+C
Sbjct: 1766 QILVRYDQWYLPLTYC 1813



to top

>LOC_Os07g29160:12007.t02606:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 1325

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3 / -3

                                               
Query: 456 LLLLKWAWRIIVRLDQWRLPATHCSPDVSWIQGLQP 563
           L LL+W W+I    DQ  +  T  SPD S +    P
Sbjct: 528 LTLLRWGWQIFS*NDQRLVDTTQPSPDHSALTSFPP 421



to top

>LOC_Os12g42600:12012.t03934:unspliced-genomic ubiquitin carboxyl-terminal hydrolase family protein, expressed|
          Length = 6364

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2 / +1

                                   
Query: 14  RGKPKRKEETSQQSRRLAAGGHRD 85
           + K K+K E    SRR AA GHRD
Sbjct: 61  KSKKKKKGEIPHASRRRAAPGHRD 132



to top

>LOC_Os11g29260:12011.t02532:unspliced-genomic hypothetical protein|
          Length = 414

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1 / -1

                                                  
Query: 214 PPETASLSAXXXXXXXXXXRTKPPMETEPRANPRRRSCA 98
           PP + SLSA           T PP  T   A P RR+ A
Sbjct: 219 PPPSTSLSAPTLVTEPRRAATGPPRRTATTAGPPRRAAA 103



to top

>LOC_Os08g20750:12008.t01885:unspliced-genomic conserved hypothetical protein|
          Length = 1314

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1 / -2

                                              
Query: 214 AHPSPIRQAKPPVEEFQLRWLTCGTRQWTRHLAGL 318
           A PS  + A PP       WLT GTR  T HL  L
Sbjct: 977 ARPSLSKSASPPNRSPLFLWLTGGTRGPTCHLLPL 873



to top

>LOC_Os03g34040:12003.t02992:unspliced-genomic 30S ribosomal protein S5, putative, expressed|
          Length = 4187

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1 / -2

                                                                  
Query: 220  PSPIRQAKPPVEEFQLRWLTCGTRQWTRHLAGLLCILALVDGNSSIESEALLAD 381
            PSP R ++  ++  Q++     T  W  H   LLC+L   + +  I   A++ D
Sbjct: 3670 PSPARPSQLHLQLHQIQGKQAST*PWLLHSLHLLCLLCRTNQDEIILRIAIIVD 3509



to top

>LOC_Os02g20930:12002.t01883:unspliced-genomic apoptosis inhibitor 5, putative, expressed|
          Length = 9729

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1 / -3

                          
Query: 151 KPPMETEPRANPRRR 107
           +PP +T+PR NPRRR
Sbjct: 286 RPPSKTKPRQNPRRR 242



to top

>LOC_Os01g21630:12001.t01900:unspliced-genomic carboxylic ester hydrolase, putative, expressed|
          Length = 6089

 Score = 30.9 bits (61), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1 / +1

                                   
Query: 271  WLTCGTRQWTRHLAGLLCILALV 339
            WL+C   Q T HLA L+C+  +V
Sbjct: 5338 WLSCSPEQGTFHLA*LVCVHVIV 5406


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 221,444,110
Number of extensions: 3500323
Number of successful extensions: 15370
Number of sequences better than 10.0: 15
Length of query: 202
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 154
Effective length of database: 52,912,542
Effective search space: 8148531468
Effective search space used: 8148531468
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top