ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf98b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT834023.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA012L23, full insert sequence Length = 605 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Plus Query: 80 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 107 Query: 140 catgggtggtttcgtcctccaccagcgccgctccatctaccgctcccttgccgac 194 |||||| || ||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct: 108 catgggagggttcgtcctccaccagcggcgcgccatctaccgctccctcgccgac 162 Score = 77.8 bits (39), Expect = 4e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| ||||||| || |||||| ||||| || || || ||||||| || || | Sbjct: 242 tggctcacgtatggaacaggggagtggatgagactctcggacgacttgttgcatacctca 301 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 302 gctctcgtggatggtaattcaagcatt 328
>ref|NM_001071414.1| Oryza sativa (japonica cultivar-group) Os10g0481400 (Os10g0481400) mRNA, partial cds Length = 713 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Plus Query: 80 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 160 Query: 140 catgggtggtttcgtcctccaccagcgccgctccatctaccgctcccttgccgac 194 |||||| || ||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct: 161 catgggagggttcgtcctccaccagcggcgcgccatctaccgctccctcgccgac 215 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| |||||||||| |||||| ||||| || || || ||||||| || || | Sbjct: 295 tggctcacgtatggaacaagggagtggatgagactctcggacgacttgttgcatacctca 354 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 355 gctctcgtggatggtaattcaagcatt 381
>dbj|AK121098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069E11, full insert sequence Length = 714 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Plus Query: 80 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102 cgcgatgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctc 161 Query: 140 catgggtggtttcgtcctccaccagcgccgctccatctaccgctcccttgccgac 194 |||||| || ||||||||||||||||| ||| |||||||||||||||| |||||| Sbjct: 162 catgggagggttcgtcctccaccagcggcgcgccatctaccgctccctcgccgac 216 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| |||||||||| |||||| ||||| || || || ||||||| || || | Sbjct: 296 tggctcacgtatggaacaagggagtggatgagactctcggacgacttgttgcatacctca 355 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 356 gctctcgtggatggtaattcaagcatt 382
>gb|AY107868.1| Zea mays PCO101151 mRNA sequence Length = 679 Score = 176 bits (89), Expect = 6e-41 Identities = 98/101 (97%) Strand = Plus / Plus Query: 84 atgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatg 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 112 atgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctctatg 171 Query: 144 ggtggtttcgtcctccaccagcgccgctccatctaccgctc 184 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 172 ggaggtttcgtcctccaccagcgccgcgccatctaccgctc 212 Score = 81.8 bits (41), Expect = 3e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 ||||||| || ||||||||||| ||||||||||| ||||| ||||||||||| |||| Sbjct: 287 tggctcatgtatggaacaaggcggtggacgagactcttgggaaacttgttgtgtacctta 346 Query: 331 gctctcgtggatggtaattcaagca 355 ||||||||||||||| || |||||| Sbjct: 347 gctctcgtggatggtgatccaagca 371
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 153 bits (77), Expect = 9e-34 Identities = 92/97 (94%) Strand = Plus / Plus Query: 98 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggtggtttcgtcct 157 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 36986 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggagggttcgtcct 37045 Query: 158 ccaccagcgccgctccatctaccgctcccttgccgac 194 ||||||||| ||| |||||||||||||||| |||||| Sbjct: 37046 ccaccagcggcgcgccatctaccgctccctcgccgac 37082 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| |||||||||| |||||| ||||| || || || ||||||| || || | Sbjct: 38449 tggctcacgtatggaacaagggagtggatgagactctcggacgacttgttgcatacctca 38508 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 38509 gctctcgtggatggtaattcaagcatt 38535 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 80 cgcgatgatcagcatcctcgcgcagg 105 |||||||||||||||||||||||||| Sbjct: 36835 cgcgatgatcagcatcctcgcgcagg 36860
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 153 bits (77), Expect = 9e-34 Identities = 92/97 (94%) Strand = Plus / Minus Query: 98 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggtggtttcgtcct 157 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 17637645 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggagggttcgtcct 17637586 Query: 158 ccaccagcgccgctccatctaccgctcccttgccgac 194 ||||||||| ||| |||||||||||||||| |||||| Sbjct: 17637585 ccaccagcggcgcgccatctaccgctccctcgccgac 17637549 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| |||||||||| |||||| ||||| || || || ||||||| || || | Sbjct: 17636182 tggctcacgtatggaacaagggagtggatgagactctcggacgacttgttgcatacctca 17636123 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 17636122 gctctcgtggatggtaattcaagcatt 17636096 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 80 cgcgatgatcagcatcctcgcgcagg 105 |||||||||||||||||||||||||| Sbjct: 17637796 cgcgatgatcagcatcctcgcgcagg 17637771 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 cgcctcgccgccggcggccat 79 ||||||||||||||||||||| Sbjct: 8663016 cgcctcgccgccggcggccat 8662996
>dbj|AK122183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150B12, full insert sequence Length = 1987 Score = 153 bits (77), Expect = 9e-34 Identities = 92/97 (94%) Strand = Plus / Plus Query: 98 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggtggtttcgtcct 157 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 254 cgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatgggagggttcgtcct 313 Query: 158 ccaccagcgccgctccatctaccgctcccttgccgac 194 ||||||||| ||| |||||||||||||||| |||||| Sbjct: 314 ccaccagcggcgcgccatctaccgctccctcgccgac 350 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 |||||||||| |||||||||| |||||| ||||| || || || ||||||| || || | Sbjct: 1716 tggctcacgtatggaacaagggagtggatgagactctcggacgacttgttgcatacctca 1775 Query: 331 gctctcgtggatggtaattcaagcatt 357 ||||||||||||||||||||||||||| Sbjct: 1776 gctctcgtggatggtaattcaagcatt 1802 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 80 cgcgatgatcagcatcctcgcgcagg 105 |||||||||||||||||||||||||| Sbjct: 103 cgcgatgatcagcatcctcgcgcagg 128
>gb|AY107226.1| Zea mays PCO129068 mRNA sequence Length = 716 Score = 147 bits (74), Expect = 5e-32 Identities = 92/98 (93%) Strand = Plus / Plus Query: 84 atgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggctccgtctccatg 143 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 198 atgatcagcatcctcgcgcaggagcgcctcctcgggttcgccctgggttccgtctccatc 257 Query: 144 ggtggtttcgtcctccaccagcgccgctccatctaccg 181 || || |||||||||||||||||||| |||||||||| Sbjct: 258 ggcggcttcgtcctccaccagcgccgggccatctaccg 295 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 271 tggctcacgtgtggaacaaggcagtggacgagacacttggccggcttgttgtgtatctta 330 ||||||| || ||||||||||||||||||||||| ||||| || ||||||||||| |||| Sbjct: 373 tggctcatgtatggaacaaggcagtggacgagacccttgggcgacttgttgtgtacctta 432 Query: 331 gctctcgtggatggtaattcaagc 354 | || ||||| |||| |||||||| Sbjct: 433 gttcgcgtgggtggtgattcaagc 456
>ref|NM_001052759.1| Oryza sativa (japonica cultivar-group) Os02g0201300 (Os02g0201300) mRNA, partial cds Length = 812 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggcc 77 |||||||||||||||||||||| Sbjct: 431 cgccgcctcgccgccggcggcc 452
>gb|BT018564.1| Zea mays clone EL01N0441D12.d mRNA sequence Length = 1506 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 tctcgccgcctcgccgccggcg 74 |||||||||||||||||||||| Sbjct: 41 tctcgccgcctcgccgccggcg 62
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 tcgcgatgatcagcatcctcgc 100 |||||||||||||||||||||| Sbjct: 3833476 tcgcgatgatcagcatcctcgc 3833497
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 cgccgcctcgccgccggcggcc 77 |||||||||||||||||||||| Sbjct: 5654816 cgccgcctcgccgccggcggcc 5654795
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 cgccgcctcgccgccggcggcc 77 |||||||||||||||||||||| Sbjct: 82552 cgccgcctcgccgccggcggcc 82531
>dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full insert sequence Length = 813 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggcc 77 |||||||||||||||||||||| Sbjct: 432 cgccgcctcgccgccggcggcc 453
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 899769 cgccgcctcgccgccggcggc 899789
>ref|NM_001058272.1| Oryza sativa (japonica cultivar-group) Os03g0822800 (Os03g0822800) mRNA, complete cds Length = 1234 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 205 cgccgcctcgccgccggcggc 225
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 4628087 cgccgcctcgccgccggcggc 4628067
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 58 ccgcctcgccgccggcggccatcgc 82 |||||||||||||||| |||||||| Sbjct: 550173 ccgcctcgccgccggccgccatcgc 550149
>gb|AY459340.1| Oryza sativa (japonica cultivar-group) clone CL000798.1 R2R3-MYB gene region Length = 12635 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 atggttgatcataatgctttc 456 ||||||||||||||||||||| Sbjct: 2935 atggttgatcataatgctttc 2955
>dbj|AK124911.1| Homo sapiens cDNA FLJ42921 fis, clone BRSSN1000056 Length = 2200 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 tttcttttgcttttaaaatgg 473 ||||||||||||||||||||| Sbjct: 1205 tttcttttgcttttaaaatgg 1185
>dbj|AK126876.1| Homo sapiens cDNA FLJ44928 fis, clone BRAMY3015111 Length = 4849 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 tttcttttgcttttaaaatgg 473 ||||||||||||||||||||| Sbjct: 3855 tttcttttgcttttaaaatgg 3835
>gb|AC010282.6| Homo sapiens chromosome 5 clone CTC-555I19, complete sequence Length = 191131 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 tttcttttgcttttaaaatgg 473 ||||||||||||||||||||| Sbjct: 145404 tttcttttgcttttaaaatgg 145424
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 cgcctcgccgccggcggccat 79 ||||||||||||||||||||| Sbjct: 53617 cgcctcgccgccggcggccat 53597
>emb|CT010552.2| Xenopus tropicalis finished cDNA, clone TEgg049a17 Length = 1770 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aggagcgcctcctcgggttcg 123 ||||||||||||||||||||| Sbjct: 1029 aggagcgcctcctcgggttcg 1009
>ref|XM_750391.1| Aspergillus fumigatus Af293 MFS monosaccharide transporter (Afu2g11520) partial mRNA Length = 1683 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 cgtctccatgggtggtttcgt 154 ||||||||||||||||||||| Sbjct: 174 cgtctccatgggtggtttcgt 194
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0093I09, from Chromosome 10, complete sequence Length = 172434 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 cgcctcgccgccggcggccat 79 ||||||||||||||||||||| Sbjct: 144113 cgcctcgccgccggcggccat 144093
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 atggttgatcataatgctttc 456 ||||||||||||||||||||| Sbjct: 1197672 atggttgatcataatgctttc 1197692 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 16544451 cgccgcctcgccgccggcggc 16544431
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 34326307 cgccgcctcgccgccggcggc 34326327
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 ccgcctcgccgccggcggcca 78 ||||||||||||||||||||| Sbjct: 3260829 ccgcctcgccgccggcggcca 3260809
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 99163 cgccgcctcgccgccggcggc 99143
>dbj|AK099592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043N03, full insert sequence Length = 1235 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 206 cgccgcctcgccgccggcggc 226
>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155947 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 29339 cgccgcctcgccgccggcggc 29359
>emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129944 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 cgccgcctcgccgccggcggc 76 ||||||||||||||||||||| Sbjct: 126315 cgccgcctcgccgccggcggc 126335
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 atggttgatcataatgctttc 456 ||||||||||||||||||||| Sbjct: 95110 atggttgatcataatgctttc 95090
>gb|AC192748.2| Gallus gallus BAC clone CH261-166H21 from chromosome z, complete sequence Length = 226699 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgtgctctgctatttctcagtac 433 |||||||||||| ||||||||||| Sbjct: 191205 atgtgctctgctctttctcagtac 191182
>emb|CT833291.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN090L16, full insert sequence Length = 1860 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atctcgccgcctcgccgccg 71 |||||||||||||||||||| Sbjct: 210 atctcgccgcctcgccgccg 191
>dbj|AK238083.1| Sus scrofa mRNA, clone:TCH010040A02, expressed in trachea Length = 1897 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 ataatgctttcttttgcttttaaa 469 |||||||||| ||||||||||||| Sbjct: 1696 ataatgctttattttgcttttaaa 1719
>ref|NM_001074166.1| Oryza sativa (japonica cultivar-group) Os11g0256200 (Os11g0256200) mRNA, complete cds Length = 832 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cgcctcgccgccggcggcca 78 |||||||||||||||||||| Sbjct: 53 cgcctcgccgccggcggcca 72
>ref|NM_001070151.1| Oryza sativa (japonica cultivar-group) Os09g0507500 (Os09g0507500) mRNA, complete cds Length = 1210 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ctcgccgcctcgccgccggc 73 |||||||||||||||||||| Sbjct: 166 ctcgccgcctcgccgccggc 147
>ref|NM_001066717.1| Oryza sativa (japonica cultivar-group) Os07g0598400 (Os07g0598400) mRNA, complete cds Length = 1782 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gccgcctcgccgccggcggc 76 |||||||||||||||||||| Sbjct: 141 gccgcctcgccgccggcggc 122
>ref|NM_001061245.1| Oryza sativa (japonica cultivar-group) Os05g0158500 (Os05g0158500) mRNA, complete cds Length = 1822 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atctcgccgcctcgccgccg 71 |||||||||||||||||||| Sbjct: 205 atctcgccgcctcgccgccg 186
>gb|CP000442.1| Burkholderia cepacia AMMD chromosome 3, complete sequence Length = 1281472 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ccatcgcgatgatcagcatc 95 |||||||||||||||||||| Sbjct: 885962 ccatcgcgatgatcagcatc 885943
>tpe|BN000652.1| TPA_inf: Oryza sativa (japonica cultivar-group) prx123 gene for class III peroxidase 123 precursor, exons 1-3 Length = 2260 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ctcgccgcctcgccgccggc 73 |||||||||||||||||||| Sbjct: 95 ctcgccgcctcgccgccggc 76
>gb|AC182800.3| Loxodonta africana clone VMRC15-58I10, complete sequence Length = 61361 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ctctgctatttctcagtacc 434 |||||||||||||||||||| Sbjct: 59654 ctctgctatttctcagtacc 59673
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ccgcctcgccgccggcggcc 77 |||||||||||||||||||| Sbjct: 3805111 ccgcctcgccgccggcggcc 3805130
>emb|CT030725.15| Mouse DNA sequence from clone RP24-281O2 on chromosome 16, complete sequence Length = 115213 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aggaaagaggaaacttctca 48 |||||||||||||||||||| Sbjct: 78610 aggaaagaggaaacttctca 78591
>gb|DQ108245.1| Squalus sp. C (Last & Stevens, 1994) cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 652 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ctgctatttctcagtaccaa 436 |||||||||||||||||||| Sbjct: 471 ctgctatttctcagtaccaa 490
>gb|AC167694.2| Daphnia pulex clone JGIAZSN-5P22, complete sequence Length = 35398 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 agaggaaacttctcaacaat 53 |||||||||||||||||||| Sbjct: 27757 agaggaaacttctcaacaat 27776
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cggcggccatcgcgatgatc 89 |||||||||||||||||||| Sbjct: 3198028 cggcggccatcgcgatgatc 3198047
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ctcgccgcctcgccgccggc 73 |||||||||||||||||||| Sbjct: 101107 ctcgccgcctcgccgccggc 101126
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cttctcaacaatctcgccgc 61 |||||||||||||||||||| Sbjct: 521941 cttctcaacaatctcgccgc 521922
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 cctcgcgcaggagcgcctcctcgg 118 ||||| |||||||||||||||||| Sbjct: 1611918 cctcgggcaggagcgcctcctcgg 1611941
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cgcctcgccgccggcggcca 78 |||||||||||||||||||| Sbjct: 43517 cgcctcgccgccggcggcca 43498
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atctcgccgcctcgccgccg 71 |||||||||||||||||||| Sbjct: 12652 atctcgccgcctcgccgccg 12671
>gb|AC113444.9| Mus musculus chromosome 15, clone RP23-268C9, complete sequence Length = 189539 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 agaggagtttcagctgagat 271 |||||||||||||||||||| Sbjct: 66106 agaggagtttcagctgagat 66087
>gb|AC124833.1| Homo sapiens BAC clone RP11-324E12 from 7, complete sequence Length = 80050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 aatagtcagattggaccaat 504 |||||||||||||||||||| Sbjct: 26605 aatagtcagattggaccaat 26624
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cctcgccgccggcggccatc 80 |||||||||||||||||||| Sbjct: 64003 cctcgccgccggcggccatc 64022
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 agctgagatggctcacgtgt 282 |||||||||||||||||||| Sbjct: 15449 agctgagatggctcacgtgt 15468
>dbj|AK138788.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430070P18 product:unclassifiable, full insert sequence Length = 2342 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 agaggagtttcagctgagat 271 |||||||||||||||||||| Sbjct: 972 agaggagtttcagctgagat 991
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 tcgccgccggcggccatcgcgatg 86 |||||||||||||||| ||||||| Sbjct: 4906624 tcgccgccggcggccagcgcgatg 4906647
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aggagtttcagctgagatgg 273 |||||||||||||||||||| Sbjct: 67863 aggagtttcagctgagatgg 67844
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 cgcctcgccgccggcggcca 78 |||||||||||||||||||| Sbjct: 8364591 cgcctcgccgccggcggcca 8364572 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cctcgccgccggcggccatc 80 |||||||||||||||||||| Sbjct: 24587101 cctcgccgccggcggccatc 24587120
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ctcgccgcctcgccgccggc 73 |||||||||||||||||||| Sbjct: 19381881 ctcgccgcctcgccgccggc 19381900
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgccggcggccatcgcg 83 |||||||||||||||||||| Sbjct: 2025191 cgccgccggcggccatcgcg 2025210 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gccgcctcgccgccggcggc 76 |||||||||||||||||||| Sbjct: 24365721 gccgcctcgccgccggcggc 24365740
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atctcgccgcctcgccgccg 71 |||||||||||||||||||| Sbjct: 3383170 atctcgccgcctcgccgccg 3383189
>emb|AL445650.9| Human DNA sequence from clone RP11-152K20 on chromosome 1 Contains the 5' end of the USH2A gene for Usher syndrome 2A (autosomal recessive, mild) and the 3' end of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 153705 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 taaaaggaaagaggaaacttctca 48 ||||| |||||||||||||||||| Sbjct: 107193 taaaatgaaagaggaaacttctca 107216
>ref|XM_651240.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (14.t00036) partial mRNA Length = 2562 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 cctgttaaaatgttttattg 586 |||||||||||||||||||| Sbjct: 2479 cctgttaaaatgttttattg 2498
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cctcgcgcaggagcgcctcc 114 |||||||||||||||||||| Sbjct: 8745055 cctcgcgcaggagcgcctcc 8745074
>ref|XM_644557.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (282.t00001) partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 cctgttaaaatgttttattg 586 |||||||||||||||||||| Sbjct: 1018 cctgttaaaatgttttattg 1037
>emb|AL596163.1| Listeria innocua Clip11262 complete genome, segment 1/12 Length = 231450 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 taatgctttcttttgctttt 466 |||||||||||||||||||| Sbjct: 63405 taatgctttcttttgctttt 63386
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gccgcctcgccgccggcggc 76 |||||||||||||||||||| Sbjct: 98914 gccgcctcgccgccggcggc 98933
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgccgccggcggccatcgcg 83 |||||||||||||||||||| Sbjct: 109488 cgccgccggcggccatcgcg 109507
>ref|XM_572392.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNH02180) partial mRNA Length = 7927 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cttctcaacaatctcgccgc 61 |||||||||||||||||||| Sbjct: 1312 cttctcaacaatctcgccgc 1331
>dbj|AK107906.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G01, full insert sequence Length = 832 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cgcctcgccgccggcggcca 78 |||||||||||||||||||| Sbjct: 53 cgcctcgccgccggcggcca 72
>dbj|AK106800.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B10, full insert sequence Length = 1822 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atctcgccgcctcgccgccg 71 |||||||||||||||||||| Sbjct: 205 atctcgccgcctcgccgccg 186
>dbj|AK072279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018A16, full insert sequence Length = 1783 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gccgcctcgccgccggcggc 76 |||||||||||||||||||| Sbjct: 142 gccgcctcgccgccggcggc 123
>dbj|AK071392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091L24, full insert sequence Length = 1213 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ctcgccgcctcgccgccggc 73 |||||||||||||||||||| Sbjct: 169 ctcgccgcctcgccgccggc 150
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gggtggtttcgtcctccaccagcg 166 ||||||| |||||||||||||||| Sbjct: 435556 gggtggtctcgtcctccaccagcg 435533
>gb|AC159374.2| Gallus gallus BAC clone CH261-5A10 from chromosome unknown, complete sequence Length = 245547 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 atgctttcttttgcttttaa 468 |||||||||||||||||||| Sbjct: 85389 atgctttcttttgcttttaa 85370
>emb|AL591973.1| Listeria monocytogenes strain EGD, complete genome, segment 1/12 Length = 200050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 taatgctttcttttgctttt 466 |||||||||||||||||||| Sbjct: 71294 taatgctttcttttgctttt 71275
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 taatgctttcttttgctttt 466 |||||||||||||||||||| Sbjct: 77459 taatgctttcttttgctttt 77440
>emb|AJ872127.1| Tripterygion delaisi delaisi mitochondrial partial COI gene for cytochrome oxidase subunit I, isolate Azores Length = 541 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ctgctatttctcagtaccaa 436 |||||||||||||||||||| Sbjct: 370 ctgctatttctcagtaccaa 389
>emb|AJ872125.1| Tripterygion delaisi delaisi mitochondrial partial COI gene for cytochrome oxidase subunit I, isolate Canary Islands, haplotype 1 Length = 541 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ctgctatttctcagtaccaa 436 |||||||||||||||||||| Sbjct: 370 ctgctatttctcagtaccaa 389
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ccctgttaaaatgttttatt 585 |||||||||||||||||||| Sbjct: 187790 ccctgttaaaatgttttatt 187771 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 102,699,418 Number of extensions: 5691383 Number of successful extensions: 131170 Number of sequences better than 10.0: 84 Number of HSP's gapped: 131169 Number of HSP's successfully gapped: 99 Length of query: 607 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 585 Effective length of database: 18,508,616,841 Effective search space: 10827540851985 Effective search space used: 10827540851985 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
