Clone Name | FLbaf98a15 |
---|---|
Clone Library Name | barley_pub |
>emb|CT830129.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107C15, full insert sequence Length = 1069 Score = 793 bits (400), Expect = 0.0 Identities = 511/548 (93%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 156 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 215 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 216 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 275 Query: 320 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 335 Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccgcgagcgc 439 |||||||| || |||||||||||| | | ||||||||||||||||| ||||||||| || Sbjct: 336 ggcagcggcgtcttcagctgccccatcgggaagaaccccatgtacacctaccgcgagtgc 395 Query: 440 atcgtcctcggcgagacggagtgcaccatagccaccgtcaacaggatcctgcgggagctc 499 ||||||||||| ||||| |||||| |||| |||||||| ||| ||||||||||||||||| Sbjct: 396 atcgtcctcggggagaccgagtgctccatcgccaccgtgaaccggatcctgcgggagctc 455 Query: 500 agccgcgactggccaggacactcctacgacctcctctccaggaattgcaaccacttctgc 559 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 456 agccgcgagtggccgggacactcctacgacctcctctccaggaactgcaaccacttctgc 515 Query: 560 gacgtgctctgcgacaggctcggcgtccccaagcttccaggctgggttaatcgttttgcc 619 |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 516 gacgtgctctgcgagaggctcgccgtccccaagctcccaggctgggttaatcgttttgcc 575 Query: 620 aatgccggcgatactgctgtggtggttgctgagaatacagcagttaagttcaggcaggct 679 ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 576 aatgctggtgataccgctgtggtagttgctgagaacacagcagttaagttcagacaggct 635 Query: 680 aaaacagaaattgtcaatgctagtagagtagcatatagatttatggccggcctgacttcg 739 ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| | ||| Sbjct: 636 aaaacagaaatagtcaatgccagtagagtagcatacagatttatggcaggcctggcatcg 695 Query: 740 aaaaatca 747 |||||||| Sbjct: 696 aaaaatca 703 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 930 gaatctgtagtgtaacagtagccagcatttgtt 962
>ref|NM_001071693.1| Oryza sativa (japonica cultivar-group) Os10g0533900 (Os10g0533900) mRNA, complete cds Length = 1072 Score = 793 bits (400), Expect = 0.0 Identities = 511/548 (93%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 159 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 218 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 219 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 278 Query: 320 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 338 Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccgcgagcgc 439 |||||||| || |||||||||||| | | ||||||||||||||||| ||||||||| || Sbjct: 339 ggcagcggcgtcttcagctgccccatcgggaagaaccccatgtacacctaccgcgagtgc 398 Query: 440 atcgtcctcggcgagacggagtgcaccatagccaccgtcaacaggatcctgcgggagctc 499 ||||||||||| ||||| |||||| |||| |||||||| ||| ||||||||||||||||| Sbjct: 399 atcgtcctcggggagaccgagtgctccatcgccaccgtgaaccggatcctgcgggagctc 458 Query: 500 agccgcgactggccaggacactcctacgacctcctctccaggaattgcaaccacttctgc 559 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 459 agccgcgagtggccgggacactcctacgacctcctctccaggaactgcaaccacttctgc 518 Query: 560 gacgtgctctgcgacaggctcggcgtccccaagcttccaggctgggttaatcgttttgcc 619 |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 519 gacgtgctctgcgagaggctcgccgtccccaagctcccaggctgggttaatcgttttgcc 578 Query: 620 aatgccggcgatactgctgtggtggttgctgagaatacagcagttaagttcaggcaggct 679 ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 579 aatgctggtgataccgctgtggtagttgctgagaacacagcagttaagttcagacaggct 638 Query: 680 aaaacagaaattgtcaatgctagtagagtagcatatagatttatggccggcctgacttcg 739 ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| | ||| Sbjct: 639 aaaacagaaatagtcaatgccagtagagtagcatacagatttatggcaggcctggcatcg 698 Query: 740 aaaaatca 747 |||||||| Sbjct: 699 aaaaatca 706 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 933 gaatctgtagtgtaacagtagccagcatttgtt 965
>dbj|AK104667.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A10, full insert sequence Length = 1085 Score = 793 bits (400), Expect = 0.0 Identities = 511/548 (93%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 172 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 231 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 232 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 291 Query: 320 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 351 Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccgcgagcgc 439 |||||||| || |||||||||||| | | ||||||||||||||||| ||||||||| || Sbjct: 352 ggcagcggcgtcttcagctgccccatcgggaagaaccccatgtacacctaccgcgagtgc 411 Query: 440 atcgtcctcggcgagacggagtgcaccatagccaccgtcaacaggatcctgcgggagctc 499 ||||||||||| ||||| |||||| |||| |||||||| ||| ||||||||||||||||| Sbjct: 412 atcgtcctcggggagaccgagtgctccatcgccaccgtgaaccggatcctgcgggagctc 471 Query: 500 agccgcgactggccaggacactcctacgacctcctctccaggaattgcaaccacttctgc 559 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 472 agccgcgagtggccgggacactcctacgacctcctctccaggaactgcaaccacttctgc 531 Query: 560 gacgtgctctgcgacaggctcggcgtccccaagcttccaggctgggttaatcgttttgcc 619 |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 532 gacgtgctctgcgagaggctcgccgtccccaagctcccaggctgggttaatcgttttgcc 591 Query: 620 aatgccggcgatactgctgtggtggttgctgagaatacagcagttaagttcaggcaggct 679 ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 592 aatgctggtgataccgctgtggtagttgctgagaacacagcagttaagttcagacaggct 651 Query: 680 aaaacagaaattgtcaatgctagtagagtagcatatagatttatggccggcctgacttcg 739 ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| | ||| Sbjct: 652 aaaacagaaatagtcaatgccagtagagtagcatacagatttatggcaggcctggcatcg 711 Query: 740 aaaaatca 747 |||||||| Sbjct: 712 aaaaatca 719 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 946 gaatctgtagtgtaacagtagccagcatttgtt 978
>dbj|AK073543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043D19, full insert sequence Length = 1058 Score = 793 bits (400), Expect = 0.0 Identities = 511/548 (93%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 160 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 219 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 220 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 279 Query: 320 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 ttccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaac 339 Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccgcgagcgc 439 |||||||| || |||||||||||| | | ||||||||||||||||| ||||||||| || Sbjct: 340 ggcagcggcgtcttcagctgccccatcgggaagaaccccatgtacacctaccgcgagtgc 399 Query: 440 atcgtcctcggcgagacggagtgcaccatagccaccgtcaacaggatcctgcgggagctc 499 ||||||||||| ||||| |||||| |||| |||||||| ||| ||||||||||||||||| Sbjct: 400 atcgtcctcggggagaccgagtgctccatcgccaccgtgaaccggatcctgcgggagctc 459 Query: 500 agccgcgactggccaggacactcctacgacctcctctccaggaattgcaaccacttctgc 559 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 460 agccgcgagtggccgggacactcctacgacctcctctccaggaactgcaaccacttctgc 519 Query: 560 gacgtgctctgcgacaggctcggcgtccccaagcttccaggctgggttaatcgttttgcc 619 |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| Sbjct: 520 gacgtgctctgcgagaggctcgccgtccccaagctcccaggctgggttaatcgttttgcc 579 Query: 620 aatgccggcgatactgctgtggtggttgctgagaatacagcagttaagttcaggcaggct 679 ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 580 aatgctggtgataccgctgtggtagttgctgagaacacagcagttaagttcagacaggct 639 Query: 680 aaaacagaaattgtcaatgctagtagagtagcatatagatttatggccggcctgacttcg 739 ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| | ||| Sbjct: 640 aaaacagaaatagtcaatgccagtagagtagcatacagatttatggcaggcctggcatcg 699 Query: 740 aaaaatca 747 |||||||| Sbjct: 700 aaaaatca 707 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 934 gaatctgtagtgtaacagtagccagcatttgtt 966
>gb|DQ123891.1| Zea mays RFLP probe csu03 (CBM 1.05) cDNA sequence Length = 1064 Score = 745 bits (376), Expect = 0.0 Identities = 578/644 (89%), Gaps = 6/644 (0%) Strand = Plus / Plus Query: 203 atgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagaccaac 262 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| Sbjct: 151 atgaaggaggtggtgctccacgtgtatgacgtgaccaacagtgactccgagaagacgaac 210 Query: 263 aacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttc 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 aacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttc 270 Query: 323 cacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggc 382 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 271 cacagcgccgtccaggtctatggcgaggacgagtggtcgttcgggttctgcgagtccggc 330 Query: 383 agcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccgcgagcgcatc 442 ||||| ||||| || |||||| | ||||||||||||||||||| ||||| ||||||||| Sbjct: 331 agcggcgtgtttagttgccccataggcaagaaccccatgtacacctaccgggagcgcatc 390 Query: 443 gtcctcggcgagacggagtgcaccatagccaccgtcaacaggatcctgcgggagctcagc 502 |||||||| ||||| |||||| ||| ||| |||| ||| |||||||||||||||||||| Sbjct: 391 gtcctcggggagaccgagtgcggcatcgccgccgttaaccggatcctgcgggagctcagc 450 Query: 503 cgcgactggccaggacactcctacgacctcctctccaggaattgcaaccacttctgcgac 562 ||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 451 cgcgagtggcctggccactcgtacgatctcctctccaggaattgtaaccatttctgcgac 510 Query: 563 gtgctctgcgacaggctcggcgtccccaagcttccaggctgggttaatcgttttgccaat 622 ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct: 511 gtgctctgcgagaggctcggcgtccccaagctcccaggttgggtgaatcgctttgccaat 570 Query: 623 gccggcgatactgctgtggtggttgctgagaatacagcagttaagttcaggcaggctaaa 682 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 571 gccggtgatactgctgtggttgttgctgagaacacagcagttaagttcaggcaggctaaa 630 Query: 683 acagaaattgtcaatgctagtagagtagcatatagatttatggccggcctgacttcgaaa 742 |||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 631 acagaaatcgtgaatgccagtagagtagcatacagatttatggcaggcctgacttccaaa 690 Query: 743 aatcaggcttcacaagagtctccaggtgac---caaaatagaggcggttcacctactttc 799 ||||| || |||| |||||||| ||| || ||||| |||||| | |||| |||| Sbjct: 691 aatcaagcctcacctgagtctccgggtaacaatcaaaacagaggcag---ccctagtttc 747 Query: 800 cagggagcatggttcaagaatgttgtttcagctggggcaaagcc 843 |||||||| ||||||||||| | || |||||||| |||||||| Sbjct: 748 cagggagcttggttcaagaacatcgtctcagctggtgcaaagcc 791
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 369 bits (186), Expect = 1e-98 Identities = 246/266 (92%) Strand = Plus / Plus Query: 335 caggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcggggtgttc 394 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 127492 caggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcggcgtcttc 127551 Query: 395 agctgccccgtgagcaagaaccccatgtacacataccgcgagcgcatcgtcctcggcgag 454 ||||||||| | | ||||||||||||||||| ||||||||| ||||||||||||| ||| Sbjct: 127552 agctgccccatcgggaagaaccccatgtacacctaccgcgagtgcatcgtcctcggggag 127611 Query: 455 acggagtgcaccatagccaccgtcaacaggatcctgcgggagctcagccgcgactggcca 514 || |||||| |||| |||||||| ||| ||||||||||||||||||||||||| ||||| Sbjct: 127612 accgagtgctccatcgccaccgtgaaccggatcctgcgggagctcagccgcgagtggccg 127671 Query: 515 ggacactcctacgacctcctctccaggaattgcaaccacttctgcgacgtgctctgcgac 574 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 127672 ggacactcctacgacctcctctccaggaactgcaaccacttctgcgacgtgctctgcgag 127731 Query: 575 aggctcggcgtccccaagcttccagg 600 ||||||| |||||||||||| ||||| Sbjct: 127732 aggctcgccgtccccaagctcccagg 127757 Score = 238 bits (120), Expect = 3e-59 Identities = 135/140 (96%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 127210 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 127269 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 127270 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 127329 Query: 320 ttccacagcgccgtccaggt 339 |||||||||||||||||||| Sbjct: 127330 ttccacagcgccgtccaggt 127349 Score = 107 bits (54), Expect = 8e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 666 agttcaggcaggctaaaacagaaattgtcaatgctagtagagtagcatatagatttatgg 725 ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 135165 agttcagacaggctaaaacagaaatagtcaatgccagtagagtagcatacagatttatgg 135224 Query: 726 ccggcctgacttcgaaaaatca 747 | |||||| | ||||||||||| Sbjct: 135225 caggcctggcatcgaaaaatca 135246 Score = 101 bits (51), Expect = 5e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 597 caggctgggttaatcgttttgccaatgccggcgatactgctgtggtggttgctgagaata 656 |||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||| | Sbjct: 128405 caggctgggttaatcgttttgccaatgctggtgataccgctgtggtagttgctgagaaca 128464 Query: 657 cagcagttaag 667 ||||||||||| Sbjct: 128465 cagcagttaag 128475 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 135473 gaatctgtagtgtaacagtagccagcatttgtt 135505
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 369 bits (186), Expect = 1e-98 Identities = 246/266 (92%) Strand = Plus / Plus Query: 335 caggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcggggtgttc 394 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 20249757 caggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcggcgtcttc 20249816 Query: 395 agctgccccgtgagcaagaaccccatgtacacataccgcgagcgcatcgtcctcggcgag 454 ||||||||| | | ||||||||||||||||| ||||||||| ||||||||||||| ||| Sbjct: 20249817 agctgccccatcgggaagaaccccatgtacacctaccgcgagtgcatcgtcctcggggag 20249876 Query: 455 acggagtgcaccatagccaccgtcaacaggatcctgcgggagctcagccgcgactggcca 514 || |||||| |||| |||||||| ||| ||||||||||||||||||||||||| ||||| Sbjct: 20249877 accgagtgctccatcgccaccgtgaaccggatcctgcgggagctcagccgcgagtggccg 20249936 Query: 515 ggacactcctacgacctcctctccaggaattgcaaccacttctgcgacgtgctctgcgac 574 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 20249937 ggacactcctacgacctcctctccaggaactgcaaccacttctgcgacgtgctctgcgag 20249996 Query: 575 aggctcggcgtccccaagcttccagg 600 ||||||| |||||||||||| ||||| Sbjct: 20249997 aggctcgccgtccccaagctcccagg 20250022 Score = 238 bits (120), Expect = 3e-59 Identities = 135/140 (96%) Strand = Plus / Plus Query: 200 gagatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagacc 259 |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 20249475 gagatgaaggaggtggtgctccacgtgtacgacgtgacgaacagcgactcggagaagacg 20249534 Query: 260 aacaacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatc 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 20249535 aacaacaccatcctccagatcaaccgcatcttcaaggaccggatcggcctcggcggcatc 20249594 Query: 320 ttccacagcgccgtccaggt 339 |||||||||||||||||||| Sbjct: 20249595 ttccacagcgccgtccaggt 20249614 Score = 107 bits (54), Expect = 8e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 666 agttcaggcaggctaaaacagaaattgtcaatgctagtagagtagcatatagatttatgg 725 ||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 20257430 agttcagacaggctaaaacagaaatagtcaatgccagtagagtagcatacagatttatgg 20257489 Query: 726 ccggcctgacttcgaaaaatca 747 | |||||| | ||||||||||| Sbjct: 20257490 caggcctggcatcgaaaaatca 20257511 Score = 101 bits (51), Expect = 5e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 597 caggctgggttaatcgttttgccaatgccggcgatactgctgtggtggttgctgagaata 656 |||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||| | Sbjct: 20250670 caggctgggttaatcgttttgccaatgctggtgataccgctgtggtagttgctgagaaca 20250729 Query: 657 cagcagttaag 667 ||||||||||| Sbjct: 20250730 cagcagttaag 20250740 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 973 gaatctgtagtgtaacagtagccaacatttgtt 1005 |||||||||||||||||||||||| |||||||| Sbjct: 20257738 gaatctgtagtgtaacagtagccagcatttgtt 20257770
>gb|AY112353.1| Zea mays CL34571_1 mRNA sequence Length = 685 Score = 349 bits (176), Expect = 1e-92 Identities = 236/256 (92%) Strand = Plus / Plus Query: 483 ggatcctgcgggagctcagccgcgactggccaggacactcctacgacctcctctccagga 542 ||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||| Sbjct: 44 ggatcctgcgggagctcagccgcgagtggcctggccactcgtacgatctcctctccagga 103 Query: 543 attgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggct 602 |||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct: 104 attgtaaccatttctgcgacgtgctctgcgagaggctcggcgtccccaagctcccaggtt 163 Query: 603 gggttaatcgttttgccaatgccggcgatactgctgtggtggttgctgagaatacagcag 662 |||| ||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 164 gggtgaatcgctttgccaatgccggtgatactgctgtggttgttgctgagaacacagcag 223 Query: 663 ttaagttcaggcaggctaaaacagaaattgtcaatgctagtagagtagcatatagattta 722 |||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||| Sbjct: 224 ttaagttcaggcaggctaaaacagaaatcgtgaatgccagtagagtagcatacagattta 283 Query: 723 tggccggcctgacttc 738 |||| ||||||||||| Sbjct: 284 tggcaggcctgacttc 299 Score = 50.1 bits (25), Expect = 0.017 Identities = 46/53 (86%) Strand = Plus / Plus Query: 791 cctactttccagggagcatggttcaagaatgttgtttcagctggggcaaagcc 843 |||| |||||||||||| ||||||||||| | || |||||||| |||||||| Sbjct: 352 cctagtttccagggagcttggttcaagaacatcgtctcagctggtgcaaagcc 404
>gb|AC189309.1| Brassica rapa subsp. pekinensis clone KBrB034C07, complete sequence Length = 109282 Score = 119 bits (60), Expect = 2e-23 Identities = 102/116 (87%) Strand = Plus / Plus Query: 227 tacgacgtgaccaacagcgactccgaaaagaccaacaacaccatcctccagatcaaccgc 286 ||||| ||||||||||| | || || ||||| ||||||||||| ||||||||||||||| Sbjct: 92474 tacgatgtgaccaacagtggatctgagaagactaacaacaccattctccagatcaaccgc 92533 Query: 287 atcttcaaggaccgcatcggcctcggcggcatcttccacagcgccgtccaggtcta 342 ||||||| ||| ||||||| |||||||||||||||||||||||| | |||||||| Sbjct: 92534 ttcttcaaagacggcatcggtctcggcggcatcttccacagcgccattcaggtcta 92589
>ref|NM_001063101.1| Oryza sativa (japonica cultivar-group) Os06g0107000 (Os06g0107000) mRNA, partial cds Length = 1378 Score = 115 bits (58), Expect = 3e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 267 ccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttccaca 326 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 98 ccatcctccacgtcaaccgcttcttcaaggacgccatcggcctcggcggcatcttccaca 157 Query: 327 gcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcg 386 |||| ||||||| ||||| || || || ||||| || || | ||| || || |||| || Sbjct: 158 ccgccatccaggtgtatggagatgaagaatggtcctttggttactgtgaaaatggcaccg 217 Query: 387 gggtgttcagctgccccgtgagcaagaaccccatgtacacataccg 432 |||| || ||||||||| | |||| |||||||||||||| ||||| Sbjct: 218 gggtttttagctgccccccgtgcaaaaaccccatgtacacgtaccg 263
>dbj|AK069627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024I03, full insert sequence Length = 1378 Score = 115 bits (58), Expect = 3e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 267 ccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttccaca 326 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 98 ccatcctccacgtcaaccgcttcttcaaggacgccatcggcctcggcggcatcttccaca 157 Query: 327 gcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctgcgagaacggcagcg 386 |||| ||||||| ||||| || || || ||||| || || | ||| || || |||| || Sbjct: 158 ccgccatccaggtgtatggagatgaagaatggtcctttggttactgtgaaaatggcaccg 217 Query: 387 gggtgttcagctgccccgtgagcaagaaccccatgtacacataccg 432 |||| || ||||||||| | |||| |||||||||||||| ||||| Sbjct: 218 gggtttttagctgccccccgtgcaaaaaccccatgtacacgtaccg 263
>gb|AY112354.1| Zea mays CL34571_2 mRNA sequence Length = 546 Score = 107 bits (54), Expect = 8e-20 Identities = 149/181 (82%), Gaps = 6/181 (3%) Strand = Plus / Plus Query: 666 agttcaggcaggctaaaacagaaattgtcaatgctagtagagtagcatatagatttatgg 725 ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| Sbjct: 319 agttcaggcaggctaaaacagaaatcgtgaatgccagtagagtagcatacagatttatgg 378 Query: 726 ccggcctgacttcgaaaaatcaggcttcacaagagtctccaggtgac---caaaatagag 782 | ||||||||||| ||| || |||| |||||||| ||| || |||||||||| Sbjct: 379 caggcctgacttccnnnnntcaagcctcacctgagtctccgggtaacaatcaaaatagag 438 Query: 783 gcggttcacctactttccagggagcatggttcaagaatgttgtttcagctggggcaaagc 842 || | |||| |||||||||||| ||||||||||| | || |||||||| ||||||| Sbjct: 439 gcag---ccctagtttccagggagcttggttcaagaacatcgtctcagctggtgcaaagc 495 Query: 843 c 843 | Sbjct: 496 c 496 Score = 83.8 bits (42), Expect = 1e-12 Identities = 51/54 (94%) Strand = Plus / Plus Query: 614 tttgccaatgccggcgatactgctgtggtggttgctgagaatacagcagttaag 667 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct: 13 tttgccaatgccggtgatactgctgtggttgttgctgagaacacagcagttaag 66
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 89.7 bits (45), Expect = 2e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 267 ccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttccaca 326 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 450062 ccatcctccacgtcaaccgcttcttcaaggacgccatcggcctcggcggcatcttccaca 450121 Query: 327 gcgccgtccaggt 339 |||| ||||||| Sbjct: 450122 ccgccatccaggt 450134 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Minus Query: 522 cctacgacctcctctccaggaattgcaaccacttctgcgacg 563 ||||| ||||| ||||| | || ||||||||||||||||||| Sbjct: 4073652 cctacaacctcgtctcccgcaactgcaaccacttctgcgacg 4073611 Score = 42.1 bits (21), Expect = 4.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccg 432 |||| |||||| || ||||||||| | |||| |||||||||||||| ||||| Sbjct: 450778 ggcaccggggtttttagctgccccccgtgcaaaaaccccatgtacacgtaccg 450830
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 89.7 bits (45), Expect = 2e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 267 ccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatcttccaca 326 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 160015 ccatcctccacgtcaaccgcttcttcaaggacgccatcggcctcggcggcatcttccaca 160074 Query: 327 gcgccgtccaggt 339 |||| ||||||| Sbjct: 160075 ccgccatccaggt 160087 Score = 42.1 bits (21), Expect = 4.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 380 ggcagcggggtgttcagctgccccgtgagcaagaaccccatgtacacataccg 432 |||| |||||| || ||||||||| | |||| |||||||||||||| ||||| Sbjct: 160731 ggcaccggggtttttagctgccccccgtgcaaaaaccccatgtacacgtaccg 160783
>dbj|AK227649.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-23-K13 Length = 988 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 542 aattgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggc 601 |||||||| ||||||||||| || ||||| ||| |||| || || || ||| | ||||| Sbjct: 380 aattgcaatcacttctgcgatgtactctgtgaccggcttggtgtgccaaagatcccaggt 439 Query: 602 tgggttaatcgttttgccaatgc 624 ||||||||||| ||||| ||||| Sbjct: 440 tgggttaatcgctttgctaatgc 462
>ref|NM_118700.1| Arabidopsis thaliana unknown protein (AT4G25680) mRNA, complete cds Length = 1153 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 542 aattgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggc 601 |||||||| ||||||||||| || ||||| ||| |||| || || || ||| | ||||| Sbjct: 525 aattgcaatcacttctgcgatgtactctgtgaccggcttggtgtgccaaagatcccaggt 584 Query: 602 tgggttaatcgttttgccaatgc 624 ||||||||||| ||||| ||||| Sbjct: 585 tgggttaatcgctttgctaatgc 607
>gb|BT013095.1| Lycopersicon esculentum clone 114361F, mRNA sequence Length = 1140 Score = 54.0 bits (27), Expect = 0.001 Identities = 135/171 (78%) Strand = Plus / Plus Query: 202 gatgaaggaggtggtgctccacgtgtacgacgtgaccaacagcgactccgaaaagaccaa 261 ||||| ||||||||| |||||| | || || ||||| || || | |||||| |||||||| Sbjct: 176 gatgacggaggtggtcctccacatatatgatgtgacgaatagtggctccgataagaccaa 235 Query: 262 caacaccatcctccagatcaaccgcatcttcaaggaccgcatcggcctcggcggcatctt 321 ||||||||| | ||||||||| | ||||| ||| | ||||| || || || ||||| Sbjct: 236 caacaccattgttcagatcaacaagtttttcaaagacggtatcggtcttggtggaatctt 295 Query: 322 ccacagcgccgtccaggtctatggcgaggaggagtggtcgttcgggttctg 372 || || ||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct: 296 tcatagtgccgttcaggtttatggagatgacgagtggtcattcggattctg 346
>gb|AY084962.1| Arabidopsis thaliana clone 122917 mRNA, complete sequence Length = 1155 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 542 aattgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggc 601 |||||||| ||||||||||| || ||||| ||| |||| || || || ||| | ||||| Sbjct: 525 aattgcaatcacttctgcgatgtactctgtgaccggcttggtgtgccaaagatcccaggt 584 Query: 602 tgggttaatcgttttgccaatgc 624 ||||||||||| ||||| ||||| Sbjct: 585 tgggttaatcgctttgctaatgc 607
>gb|BT003130.1| Arabidopsis thaliana At4g25680 mRNA, complete cds Length = 759 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 542 aattgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggc 601 |||||||| ||||||||||| || ||||| ||| |||| || || || ||| | ||||| Sbjct: 340 aattgcaatcacttctgcgatgtactctgtgaccggcttggtgtgccaaagatcccaggt 399 Query: 602 tgggttaatcgttttgccaatgc 624 ||||||||||| ||||| ||||| Sbjct: 400 tgggttaatcgctttgctaatgc 422
>emb|BX828491.1|CNS0A48U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH95ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1328 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 542 aattgcaaccacttctgcgacgtgctctgcgacaggctcggcgtccccaagcttccaggc 601 |||||||| ||||||||||| || ||||| ||| |||| || || || ||| | ||||| Sbjct: 675 aattgcaatcacttctgcgatgtactctgtgaccggcttggtgtgccaaagatcccaggt 734 Query: 602 tgggttaatcgttttgccaatgc 624 ||||||||||| ||||| ||||| Sbjct: 735 tgggttaatcgctttgctaatgc 757
>emb|CT836332.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN080O24, full insert sequence Length = 545 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 522 cctacgacctcctctccaggaattgcaaccacttctgcgacg 563 ||||| ||||| ||||| | || ||||||||||||||||||| Sbjct: 65 cctacaacctcgtctcccgcaactgcaaccacttctgcgacg 106
>emb|CT836261.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O20, full insert sequence Length = 1167 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Plus Query: 522 cctacgacctcctctccaggaattgcaaccacttctgcgacg 563 ||||| ||||| ||||| | || ||||||||||||||||||| Sbjct: 642 cctacaacctcgtctcccgcaactgcaaccacttctgcgacg 683
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 gaccgcatcggcctcggcggca 317 |||||||||||||||||||||| Sbjct: 311830 gaccgcatcggcctcggcggca 311851
>ref|XM_858713.1| PREDICTED: Canis familiaris similar to ankyrin repeat and sterile alpha motif domain containing 1, transcript variant 6 (LOC608187), mRNA Length = 3742 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 70 accacctcctgcaaagcaaccacccg 95 ||||||||||||||||| |||||||| Sbjct: 1170 accacctcctgcaaagccaccacccg 1195
>ref|XM_846364.1| PREDICTED: Canis familiaris similar to ankyrin repeat and sterile alpha motif domain containing 1, transcript variant 1 (LOC608187), mRNA Length = 3826 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 70 accacctcctgcaaagcaaccacccg 95 ||||||||||||||||| |||||||| Sbjct: 1287 accacctcctgcaaagccaccacccg 1312
>emb|AL606480.11| Mouse DNA sequence from clone RP23-112C19 on chromosome 11 Contains the 3' end of the Col1a1 gene for procollagen type I alpha 1, the Sgca gene for alpha sarcoglycan (dystrophin-associated glycoprotein), the Hils1 gene for histone H1-like protein in spermatids 1, the Ppp1r9b gene for protein phosphatase 1 regulatory subunit 9B, a novel gene (A930041A10Rik, B930032I08Rik, C530046K03Rik), the Pdk2 gene for pyruvate dehydrogenase kinase isoenzyme 2, a novel gene, the Itga3 gene for integrin alpha 3, the Dlx3 gene for distal-less homeobox 3 and three CpG islands, complete sequence Length = 186276 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 480 acaggatcctgcgggagctcag 501 |||||||||||||||||||||| Sbjct: 58007 acaggatcctgcgggagctcag 58028
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Minus Query: 522 cctacgacctcctctccaggaattgcaaccacttctgcgacg 563 ||||| ||||| ||||| | || ||||||||||||||||||| Sbjct: 117305 cctacaacctcgtctcccgcaactgcaaccacttctgcgacg 117264
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04 Length = 136159 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Minus Query: 522 cctacgacctcctctccaggaattgcaaccacttctgcgacg 563 ||||| ||||| ||||| | || ||||||||||||||||||| Sbjct: 6911 cctacaacctcgtctcccgcaactgcaaccacttctgcgacg 6870
>ref|XM_310523.2| Anopheles gambiae str. PEST ENSANGP00000017298 (ENSANGG00000014809), partial mRNA Length = 1971 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 194 gtcggcgagatgaaggaggtggtgctccac 223 ||||||||| |||||||||||||| ||||| Sbjct: 211 gtcggcgaggtgaaggaggtggtggtccac 240
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 ccgcatcggcctcggcggcat 318 ||||||||||||||||||||| Sbjct: 2585912 ccgcatcggcctcggcggcat 2585892
>emb|AM236086.1| Rhizobium leguminosarum bv. viciae plasmid pRL12 complete genome, strain 3841 Length = 870021 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 gtcgttcgggttctgcgagaacggc 382 |||||||| |||||||||||||||| Sbjct: 553536 gtcgttcgagttctgcgagaacggc 553560
>ref|XM_001171581.1| PREDICTED: Pan troglodytes notch1, transcript variant 1 (NOTCH1), mRNA Length = 9310 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 4778 tcctgcgggagctcagccgcg 4798
>ref|XM_520371.2| PREDICTED: Pan troglodytes notch1, transcript variant 2 (NOTCH1), mRNA Length = 9307 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 4775 tcctgcgggagctcagccgcg 4795
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 4778 tcctgcgggagctcagccgcg 4798
>gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 160376 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1007 aaacatgtttattcatacatc 1027 ||||||||||||||||||||| Sbjct: 34601 aaacatgtttattcatacatc 34621
>gb|AC021576.12| Homo sapiens chromosome 8, clone RP11-700M17, complete sequence Length = 166450 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 979 gtagtgtaacagtagccaaca 999 ||||||||||||||||||||| Sbjct: 81828 gtagtgtaacagtagccaaca 81848
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 148540 tcctgcgggagctcagccgcg 148520
>dbj|AB209873.1| Homo sapiens mRNA for notch1 preproprotein variant protein Length = 7831 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 3312 tcctgcgggagctcagccgcg 3332
>emb|BX901901.6| Zebrafish DNA sequence from clone CH211-223B8 in linkage group 1, complete sequence Length = 172983 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 983 tgtaacagtagccaacatttg 1003 ||||||||||||||||||||| Sbjct: 113418 tgtaacagtagccaacatttg 113438
>gb|AC112695.3| Homo sapiens BAC clone RP11-9B6 from 4, complete sequence Length = 109860 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 985 taacagtagccaacatttgtt 1005 ||||||||||||||||||||| Sbjct: 84773 taacagtagccaacatttgtt 84753
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 4778 tcctgcgggagctcagccgcg 4798
>emb|BX323052.5| Zebrafish DNA sequence from clone CH211-234A12 in linkage group 24, complete sequence Length = 173982 Score = 42.1 bits (21), Expect = 4.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 987 acagtagccaacatttgttcaaacatgtttatt 1019 ||||||||||||||||| ||||| | ||||||| Sbjct: 33445 acagtagccaacatttgatcaaaaaggtttatt 33477
>emb|BX537113.8| Zebrafish DNA sequence from clone CH211-207G17 in linkage group 16, complete sequence Length = 218597 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 cgtgaccacctcctgcaaagcaacc 90 ||||||||||||||| ||||||||| Sbjct: 189255 cgtgaccacctcctgaaaagcaacc 189231
>gb|BC032414.1| Homo sapiens cDNA clone IMAGE:5215912, with apparent retained intron Length = 3721 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 1140 tcctgcgggagctcagccgcg 1120
>emb|AL160211.2|CNS01RGV Human chromosome 14 DNA sequence BAC R-134J10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164514 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1005 tcaaacatgtttattcataca 1025 ||||||||||||||||||||| Sbjct: 10476 tcaaacatgtttattcataca 10456
>emb|AL133239.4|CNS01DUC Human chromosome 14 DNA sequence BAC R-71I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 131637 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1005 tcaaacatgtttattcataca 1025 ||||||||||||||||||||| Sbjct: 95608 tcaaacatgtttattcataca 95588
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcctgcgggagctcagccgcg 506 ||||||||||||||||||||| Sbjct: 4778 tcctgcgggagctcagccgcg 4798
>dbj|AP003478.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1247B1 Length = 153894 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 979 gtagtgtaacagtagccaaca 999 ||||||||||||||||||||| Sbjct: 48691 gtagtgtaacagtagccaaca 48671 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 153,993,701 Number of extensions: 7842173 Number of successful extensions: 147868 Number of sequences better than 10.0: 48 Number of HSP's gapped: 147868 Number of HSP's successfully gapped: 67 Length of query: 1064 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1041 Effective length of database: 18,503,978,556 Effective search space: 19262641676796 Effective search space used: 19262641676796 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)