>Q6ZTW0:TPGS1_HUMAN Tubulin polyglutamylase complex subunit 1 - Homo sapiens (Human)|
          Length = 290
 Score = 33.1 bits (74), Expect = 0.37
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 289 IRLIPMDGQAPQSVVLHLLQSVRVLKLSCASKSCRPQEE-QLVAARLGVSTCNSLPQAVS 113
           +R I  DGQAP+ VV  LL+ V+          CR  E   L   R G  TC  L + V+
Sbjct: 147 LRRICRDGQAPEEVVAPLLRKVQ----------CRDHEAVPLSVFRAGTLTCFVLLEFVA 196

Query: 112 RSIVPPFQLIESSS 71
           R+    FQL+E S+
Sbjct: 197 RA-GALFQLLEDSA 209

>P28349:NIT4_NEUCR Nitrogen assimilation transcription factor nit-4 - Neurospora|
           crassa
          Length = 1090

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 376 SGRSEELRTLLNCRRMRERWQLHLVACPFIRLIPMDGQAPQSVVLHLLQSVRVLKL 209
           SG+S EL+ L    R  E W+  L         P DGQ P  +++H+   ++ + L
Sbjct: 488 SGKSAELKKLSELHRRLEDWRTELPK----EFEPKDGQLPNVILMHMFYHLQYIHL 539

>Q50103:MNTH_MYCLE Probable manganese transport protein mntH - Mycobacterium leprae|
          Length = 426

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -1

Query: 172 QLVAARLGVSTCNSLPQAVSRSIVPPFQL 86
           Q ++A+LG+ T  SLPQA+S+ +  PF+L
Sbjct: 79  QYLSAKLGLVTGQSLPQAISKQMSHPFRL 107

>P11047:LAMC1_HUMAN Laminin subunit gamma-1 precursor - Homo sapiens (Human)|
          Length = 1609

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 162  ATNCSSWGRHDLDAQLSLRTRTDCSKC----NTTDCGACPSIGINLMNGQ-ATRCSCH 320
            A NC+ +G   +  Q S    T   +C       DCGAC     NL +GQ   RC CH
Sbjct: 883  ACNCNPYGT--MKQQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSGQGCERCDCH 938

>P21849:TSA4_GIALA Major surface-labeled trophozoite antigen 417 precursor - Giardia|
           lamblia (Giardia intestinalis)
          Length = 713

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 27  TCEGSSIANACC*CSEEDSMSWNGGTILRLTACGRELHVLTPSRAATNCSSWGRHDLDAQ 206
           TC  S I N  C    ++    NGG    +   G+ + +  P+      ++ G + LD+ 
Sbjct: 511 TCNDSPIQNGVCGTCADNYFKMNGGCYETVKYPGKTVCISAPNGGTCQKAADG-YKLDSG 569

Query: 207 LSLRTRTDCSKC-NTTDCGAC 266
                   C +C ++TDC  C
Sbjct: 570 TLTVCSEGCKECASSTDCTTC 590

>O60179:YG44_SCHPO Uncharacterized protein C23E6.04c - Schizosaccharomyces pombe|
            (Fission yeast)
          Length = 1649

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = -1

Query: 283  LIPMDGQAPQSVVLHLLQSVRVLKLSCASKSCRPQEEQLVAARLGVSTCNSLPQAVSRSI 104
            L  M G +P   +  L  S+R+  L    +S    + Q  A  L  +  N+ P+AV   +
Sbjct: 841  LYEMIGASP---ITELSPSIRIDTLVGCIRSTNNPQIQNKALLLVSALANAAPEAVLHGV 897

Query: 103  VPPFQLIESSSLHQQHAFAI 44
            +P F  + S+ L +  AF+I
Sbjct: 898  MPIFTFMGSTVLSRDDAFSI 917

>Q80W87:ROBO4_RAT Roundabout homolog 4 precursor - Rattus norvegicus (Rat)|
          Length = 961

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 244 LHLLQSVRVLKLSCASKSCRPQEEQ-LVAARLGVSTC---NSLPQAVSR 110
           LH LQS   L L       RPQ++Q +++A LGV TC   N L  AVSR
Sbjct: 89  LHYLQSDGTLLLHRPPTHGRPQDDQNILSAILGVYTCEASNRLGTAVSR 137

>Q19317:NBEA_CAEEL Putative neurobeachin homolog - Caenorhabditis elegans|
          Length = 2507

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 22/96 (22%), Positives = 38/96 (39%)
 Frame = -1

Query: 355  RTLLNCRRMRERWQLHLVACPFIRLIPMDGQAPQSVVLHLLQSVRVLKLSCASKSCRPQE 176
            + L  C  +  RW L  +   F+R   +     Q+  L L  + R   +         ++
Sbjct: 1738 QVLRYCEALHARWNLQEIRAIFLRRYLL-----QNTALELFLASRTAIMFAFDSEDAVKK 1792

Query: 175  EQLVAARLGVSTCNSLPQAVSRSIVPPFQLIESSSL 68
                  R+GV     LPQ+   S++ P QL + S +
Sbjct: 1793 VVYQLPRVGVGVKYGLPQSRKTSLMTPRQLFKHSDM 1828

>Q3T8J9:GON4L_HUMAN GON-4-like protein - Homo sapiens (Human)|
          Length = 2241

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -1

Query: 256  QSVVLHLLQSVRVLKLSCASKSCRPQEEQLVAARLGVSTCNSLPQAVSRSIVPPFQLI-- 83
            + VVL   ++ RV+   C  +  +PQ   +++ +LG    N  P  VS       QL   
Sbjct: 2151 EKVVLWTREADRVILTMCQEQGAQPQTFNIISQQLG----NKTPAEVSHRFRELMQLFHT 2206

Query: 82   --ESSSLHQQHAFAIDDPSHVHGHG 14
              E+SS  +  A +  +   +  HG
Sbjct: 2207 ACEASSEDEDDATSTSNADQLSDHG 2231

>Q5VWM5:PRAM9_HUMAN PRAME family member 9/15 - Homo sapiens (Human)|
          Length = 478

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 338 QANARTVATASCCLSVHQINPDGWTGTTVCGVTFAAICSRP--QTQLCVQVVSSPRRAIG 165
           Q NA   A + C     ++N   + G  +C  T   + S       LCV++  +PR + G
Sbjct: 368 QVNAILPALSRC----FELNTFSFCGNPICMATLENLLSHTIILKNLCVELYPAPRESYG 423

Query: 164 GSSTRC 147
              T C
Sbjct: 424 ADGTLC 429

>O60810:PRAM4_HUMAN PRAME family member 4 - Homo sapiens (Human)|
          Length = 478

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 338 QANARTVATASCCLSVHQINPDGWTGTTVCGVTFAAICSRP--QTQLCVQVVSSPRRAIG 165
           Q NA   A + C     ++N   + G  +C  T   + S       LCV++  +PR + G
Sbjct: 368 QVNAILPALSRC----FELNTFSFCGNPICMATLENLLSHTIILKNLCVELYPAPRESYG 423

Query: 164 GSSTRC 147
              T C
Sbjct: 424 ADGTLC 429

>Q9EPN1:NBEA_MOUSE Protein neurobeachin - Mus musculus (Mouse)|
          Length = 2936

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 157  RLGVSTCNSLPQAVSRSIVPPFQLIESSSLHQQ 59
            R+GV T   LPQA   S+  P QL +SS++ Q+
Sbjct: 2246 RVGVGTSYGLPQARRISLATPRQLYKSSNMTQR 2278

>Q8NFP9:NBEA_HUMAN Protein neurobeachin - Homo sapiens (Human)|
          Length = 2946

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 157  RLGVSTCNSLPQAVSRSIVPPFQLIESSSLHQQ 59
            R+GV T   LPQA   S+  P QL +SS++ Q+
Sbjct: 2256 RVGVGTSYGLPQARRISLATPRQLYKSSNMTQR 2288

>P49866:HNF4_DROME Transcription factor HNF-4 homolog - Drosophila melanogaster (Fruit|
           fly)
          Length = 666

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 163 AARLGVSTCNSLPQAVS-RSIVPPFQLIESSSLHQQHA 53
           AA   VS+ +S P +V+  SI PP    +S   HQQHA
Sbjct: 513 AAAAAVSSSSSAPASVAPASISPPLNSPKSQHQHQQHA 550

>P57782:ESR2_ONCMY Estrogen receptor beta - Oncorhynchus mykiss (Rainbow trout) (Salmo|
           gairdneri)
          Length = 568

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 148 VSTCNSLPQAVSRSIV-PPFQLIESSSLHQQH 56
           +S C+S+ Q++S ++  PP   + S +LHQQH
Sbjct: 94  LSECSSVRQSLSPTLFWPPHSQVSSLALHQQH 125

>Q57501:HPAC_ECOLI 4-hydroxyphenylacetate 3-monooxygenase reductase component -|
           Escherichia coli
          Length = 170

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 317 ATASCCLSVHQINPDGWTGTTVCGVTFAAICS----RPQTQLCVQVVSSPRRAIGGSSTR 150
           A AS   +V+ I  +G  G   CG+T  A+CS     P   +C+   S+      G+   
Sbjct: 13  AMASLSAAVNIITTEGDAGQ--CGITATAVCSVTDTPPSLMVCINANSAMNPVFQGNGKL 70

Query: 149 C 147
           C
Sbjct: 71  C 71

>Q9Z1N7:ARI3B_MOUSE AT-rich interactive domain-containing protein 3B - Mus musculus|
           (Mouse)
          Length = 568

 Score = 28.5 bits (62), Expect = 9.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -3

Query: 263 GTTVCGVTFAAICSRPQTQLCVQVVSSPRRAIGGSSTRC*YM*LSATSSESEYCAPIPT 87
           GTT  GV FA    +P   L   +  S  ++IG S+        S+++S S +C+P PT
Sbjct: 508 GTTYTGVLFA---QKPVVHL---IAGSTPQSIGSSA--------SSSNSSSSHCSPSPT 552

>P79749:PGFRB_FUGRU Beta-type platelet-derived growth factor receptor precursor - Fugu|
           rubripes (Japanese pufferfish) (Takifugu rubripes)
          Length = 1048

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
 Frame = -1

Query: 262 APQSVVLHLLQSVRVLKLSCASKSCR---PQEEQLVAARLGVS---TCNSLPQA---VSR 110
           A ++ VLHL  ++  L  SC + SC    P+E+QL+ A  G S   TC    +    +  
Sbjct: 6   AMRAAVLHLTVALAALLSSCTTVSCLKIVPEEKQLILAE-GSSLSLTCAGSSETTWDLKS 64

Query: 109 SIVPPFQL-IESSSLH 65
             VP FQ+  ESS L+
Sbjct: 65  DDVPFFQMKAESSDLN 80

>O02837:CSF3_PIG Granulocyte colony-stimulating factor precursor - Sus scrofa (Pig)|
          Length = 195

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
 Frame = -1

Query: 319 WQLHLVACPFIRLIPMDGQAPQSVVLHLLQSVRVL---------KLSCASKSCRPQEEQL 167
           W + L   P    +      PQS +L  L+ VR +         +L    K C PQE  L
Sbjct: 11  WHIALWMVPEAAPLSPASSLPQSFLLKCLEQVRKIQADGAELQERLCATHKLCHPQELVL 70

Query: 166 VAARLG-----VSTCNS 131
           +   LG     +S+C+S
Sbjct: 71  LGHSLGLPQASLSSCSS 87


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 76,677,575
Number of extensions: 1641779
Number of successful extensions: 4761
Number of sequences better than 10.0: 19
Number of HSP's gapped: 4760
Number of HSP's successfully gapped: 19
Length of query: 145
Length of database: 100,686,439
Length adjustment: 102
Effective length of query: 43
Effective length of database: 72,708,349
Effective search space: 3126459007
Effective search space used: 3126459007
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)