Clone Name | FLbaf95l16 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ853840.1| Hordeum vulgare partial mRNA for putative WRKY4 protein Length = 701 Score = 1261 bits (636), Expect = 0.0 Identities = 685/700 (97%), Gaps = 1/700 (0%) Strand = Plus / Plus Query: 27 gcgggcgatgacggcgggcgctcaccgccggcggcagtctatgacgacctggtggaggtg 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcgggcgatgacggcgggcgctcaccgccggcggcagtctatgacgacctggtggaggtg 60 Query: 87 cgggagcacgcggcgacgctgcacagcatgctgcaggggtcgccgagcgtgtcggccgtg 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgggagcacgcggcgacgctgcacagcatgctgcaggggtcgccgagcgtgtcggccgtg 120 Query: 147 gacgcgagggagctgatgaaggggatgatggccaagctgtccagcgctatgtcggtgctg 206 |||||||||||||||||||||||| || |||| ||| ||||||||| | |||||||| || Sbjct: 121 gacgcgagggagctgatgaaggggttgttggcaaagttgtccagcgttttgtcggtgttg 180 Query: 207 ggcaccaccagcggcggcgtggaggcgtcttcggaggctggtggtcggggtccaggtggg 266 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 181 gccaccaccagcggcggcgtggaggcgtcttcggaggttggtggtcggggtccaggtggg 240 Query: 267 aggaggaagagatcgggcacagtgtccgggccgcaccgccggagcacctccaggagaagg 326 |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| Sbjct: 241 aggaggaagagatcgggcacggtatccgggccgcaccgccggagcacctccacgagaagg 300 Query: 327 tcgaagagccctttcatcaacatggtcactgctaggacgctcaacgatggcaagacatgg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcgaagagccctttcatcaacatggtcactgctaggacgctcaacgatggcaagacatgg 360 Query: 387 aggaagtacggccaaaaatgtattcatgcctgtactaacccgaggagctactacaggtgc 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaagtacggccaaaaatgtattcatgcctgtactaacccgaggagctactacaggtgc 420 Query: 447 tctcataagccagaccaaggctgccagg-ccacgaggcaggtccaggagtccgactccaa 505 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 421 tctcataagccagaccaaggctgccaggcccacgaggcaggtccaggagtccgactccaa 480 Query: 506 cccgtcggagtacctcatcagctactacggccagcacacctgtaaggacccctccacgtt 565 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cccgtgcgagtacctcatcagctactacggccagcacacctgtaaggacccctccacgtt 540 Query: 566 ccgatcactcatcatccaaggcgccgccgacgctgccccgcctgaagacttgccaaacct 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ccgatcactcatcatccaaggcgccgccgacgctgccccgcctgaagacttgccaaacct 600 Query: 626 catcagcttcacgtcgatcaatggcgccgcagctgcgagcacgagctcttctccaaatca 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 catcagcttcacgtcgatcaatggcgccgcagctgcgagcacgagctcttctccaaatca 660 Query: 686 tctcgtgagagatgcggctgatcttcattcgatgcttttc 725 |||||||||||||||||||||||||||||||||||||||| Sbjct: 661 tctcgtgagagatgcggctgatcttcattcgatgcttttc 700
>tpg|BK005050.1| TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 47 (WRKY47) gene, complete cds Length = 1927 Score = 75.8 bits (38), Expect = 3e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 1352 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 1411 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctgt 548 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 1412 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctgc 1471 Query: 549 aaggacccctccac 562 | |||||| ||||| Sbjct: 1472 agggacccttccac 1485 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Plus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 1831 cagcttcccgtcctctcccagcagcctcgggttcatg 1867 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 58 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 107
>ref|NM_001067180.1| Oryza sativa (japonica cultivar-group) Os07g0680400 (Os07g0680400) mRNA, complete cds Length = 1776 Score = 69.9 bits (35), Expect = 2e-08 Identities = 98/119 (82%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 896 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 955 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctg 547 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 956 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctg 1014 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Plus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 1375 cagcttcccgtcctctcccagcagcctcgggttcatg 1411 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 527 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 576
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 69.9 bits (35), Expect = 2e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 28776100 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 28776041 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctg 547 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 28776040 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctg 28775982 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Minus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 28775621 cagcttcccgtcctctcccagcagcctcgggttcatg 28775585 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 28777391 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 28777342
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 69.9 bits (35), Expect = 2e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 33786 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 33727 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctg 547 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 33726 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctg 33668 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Minus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 33307 cagcttcccgtcctctcccagcagcctcgggttcatg 33271 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 35077 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 35028
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 69.9 bits (35), Expect = 2e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 83661 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 83602 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctg 547 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 83601 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctg 83543 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Minus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 83182 cagcttcccgtcctctcccagcagcctcgggttcatg 83146 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 84952 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 84903
>dbj|AK110900.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B01, full insert sequence Length = 1776 Score = 69.9 bits (35), Expect = 2e-08 Identities = 98/119 (82%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | |||| |||||||||||| || |||||| | ||| || Sbjct: 896 aggagctactacaggtgcacgcataggccagaccaaggttgtatggccacaaagcaagta 955 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctg 547 ||| ||||| || ||| ||||||||| | |||||||||||||||| |||||||||| Sbjct: 956 cagacctccgagtctaactcgtcggagttcgtcatcagctactacggtgagcacacctg 1014 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Plus Query: 950 cagcttcccttcctcgccgagcagcctcgggttcatg 986 ||||||||| ||||| || |||||||||||||||||| Sbjct: 1375 cagcttcccgtcctctcccagcagcctcgggttcatg 1411 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 69 gacgacctggtggaggtgcgggagcacgcggcgacgctgcacagcatgct 118 ||||||||| | ||| |||| ||||| ||||||| ||| ||||||||||| Sbjct: 527 gacgacctgctcgagatgcgcgagcaagcggcgatgctccacagcatgct 576
>ref|NM_001056568.1| Oryza sativa (japonica cultivar-group) Os03g0335200 (Os03g0335200) mRNA, partial cds Length = 1475 Score = 54.0 bits (27), Expect = 0.001 Identities = 108/135 (80%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | || |||| ||||||||||||| |||| |||||| | Sbjct: 427 aggagctactacaggtgcacgcacaagctagaccaaggctgcggtgccaggaggcaaacc 486 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctgt 548 ||| | ||| || |||||||| | ||| ||||| |||||||||| |||||||||| Sbjct: 487 cagcgctgcgaggccgacccgtcgaattacgacatcacctactacggcgagcacacctgc 546 Query: 549 aaggacccctccacg 563 | |||||| |||||| Sbjct: 547 agggacccttccacg 561
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 54.0 bits (27), Expect = 0.001 Identities = 108/135 (80%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | || |||| ||||||||||||| |||| |||||| | Sbjct: 27984 aggagctactacaggtgcacgcacaagctagaccaaggctgcggtgccaggaggcaaacc 28043 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctgt 548 ||| | ||| || |||||||| | ||| ||||| |||||||||| |||||||||| Sbjct: 28044 cagcgctgcgaggccgacccgtcgaattacgacatcacctactacggcgagcacacctgc 28103 Query: 549 aaggacccctccacg 563 | |||||| |||||| Sbjct: 28104 agggacccttccacg 28118
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 54.0 bits (27), Expect = 0.001 Identities = 108/135 (80%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | || |||| ||||||||||||| |||| |||||| | Sbjct: 12365729 aggagctactacaggtgcacgcacaagctagaccaaggctgcggtgccaggaggcaaacc 12365788 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctgt 548 ||| | ||| || |||||||| | ||| ||||| |||||||||| |||||||||| Sbjct: 12365789 cagcgctgcgaggccgacccgtcgaattacgacatcacctactacggcgagcacacctgc 12365848 Query: 549 aaggacccctccacg 563 | |||||| |||||| Sbjct: 12365849 agggacccttccacg 12365863
>dbj|AK105244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F08, full insert sequence Length = 1483 Score = 54.0 bits (27), Expect = 0.001 Identities = 108/135 (80%) Strand = Plus / Plus Query: 429 aggagctactacaggtgctctcataagccagaccaaggctgccaggccacgaggcaggtc 488 |||||||||||||||||| | || |||| ||||||||||||| |||| |||||| | Sbjct: 429 aggagctactacaggtgcacgcacaagctagaccaaggctgcggtgccaggaggcaaacc 488 Query: 489 caggagtccgactccaacccgtcggagtacctcatcagctactacggccagcacacctgt 548 ||| | ||| || |||||||| | ||| ||||| |||||||||| |||||||||| Sbjct: 489 cagcgctgcgaggccgacccgtcgaattacgacatcacctactacggcgagcacacctgc 548 Query: 549 aaggacccctccacg 563 | |||||| |||||| Sbjct: 549 agggacccttccacg 563
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ggtgctgggcaccaccagcggcg 222 ||||||||||||||||||||||| Sbjct: 2877820 ggtgctgggcaccaccagcggcg 2877798
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 953 cttcccttcctcgccgagcagcctcg 978 ||||||||| |||||||||||||||| Sbjct: 3519066 cttcccttcgtcgccgagcagcctcg 3519041
>gb|AC154650.2| Mus musculus BAC clone RP23-162K2 from chromosome 17, complete sequence Length = 210417 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tcggtgctgggcaccaccagcg 219 |||||||||||||||||||||| Sbjct: 198208 tcggtgctgggcaccaccagcg 198229
>gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, complete sequence Length = 170366 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1145 gcatgtggatagaaggtactaa 1166 |||||||||||||||||||||| Sbjct: 97127 gcatgtggatagaaggtactaa 97106
>gb|AC168063.3| Mus musculus BAC clone RP23-197G3 from chromosome 17, complete sequence Length = 213263 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 tcggtgctgggcaccaccagcg 219 |||||||||||||||||||||| Sbjct: 201051 tcggtgctgggcaccaccagcg 201030
>gb|AC092480.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-387f2, complete sequence Length = 213144 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tcggtgctgggcaccaccagcg 219 |||||||||||||||||||||| Sbjct: 210086 tcggtgctgggcaccaccagcg 210107
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 904 tcgtggggatcgccggcgtcgacac 928 ||||||||||||||||| ||||||| Sbjct: 1969775 tcgtggggatcgccggcatcgacac 1969799
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 tgacgacctggtggaggtgcg 88 ||||||||||||||||||||| Sbjct: 936623 tgacgacctggtggaggtgcg 936603
>gb|AY262743.2| Mycobacterium wolinskyi strain ATCC 700010 RpoB gene, complete cds Length = 3839 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2761 acgccggcgggcagctcgtcg 2741
>dbj|AK241326.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065143F14, full insert sequence Length = 1195 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 772 ctactacggccagcacacctg 792
>ref|NM_001072528.1| Oryza sativa (japonica cultivar-group) Os12g0116700 (Os12g0116700) mRNA, complete cds Length = 1476 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 1134 ctactacggccagcacacctg 1154
>ref|XR_015745.1| PREDICTED: Homo sapiens similar to glutaredoxin 5 (LOC732171), mRNA Length = 847 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 ctagtaatattttattgtgaa 1117 ||||||||||||||||||||| Sbjct: 583 ctagtaatattttattgtgaa 603
>ref|XR_015467.1| PREDICTED: Homo sapiens similar to glutaredoxin 5 (LOC729153), mRNA Length = 847 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 ctagtaatattttattgtgaa 1117 ||||||||||||||||||||| Sbjct: 583 ctagtaatattttattgtgaa 603
>tpg|BK005067.1| TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 64 (WRKY64) gene, complete cds Length = 1239 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 897 ctactacggccagcacacctg 917
>ref|XR_010749.1| PREDICTED: Macaca mulatta hypothetical protein LOC700554 (LOC700554), mRNA Length = 830 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 ctagtaatattttattgtgaa 1117 ||||||||||||||||||||| Sbjct: 570 ctagtaatattttattgtgaa 590
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 1074493 acgccggcgggcagctcgtcg 1074473 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gcggcgcgggcgatgacggcg 42 ||||||||||||||||||||| Sbjct: 3804203 gcggcgcgggcgatgacggcg 3804223
>gb|DQ298183.1| Oryza sativa WRKY transcription factor 64 mRNA, complete cds Length = 1007 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 639 ctactacggccagcacacctg 659
>ref|NM_111063.2| Arabidopsis thaliana WRKY45; transcription factor (WRKY45) mRNA, complete cds Length = 837 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 461 tggaggaagtacggccaaaaa 481
>gb|AY147169.1| Mycobacterium mageritense strain CIP 104973T RpoB (rpoB) gene, complete cds Length = 3855 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2739 acgccggcgggcagctcgtcg 2719
>gb|AY147168.1| Mycobacterium mageritense RpoB (rpoB) gene, complete cds Length = 3855 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2739 acgccggcgggcagctcgtcg 2719
>gb|AY147166.1| Mycobacterium peregrinum strain CIP 105382T RpoB (rpoB) gene, complete cds Length = 4016 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2759 acgccggcgggcagctcgtcg 2739
>gb|AC107678.14| Mus musculus chromosome 1, clone RP23-252K18, complete sequence Length = 169766 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 436 actacaggtgctctcataagccaga 460 ||||||||||||| ||||||||||| Sbjct: 71585 actacaggtgctcacataagccaga 71609
>gb|AY262742.1| Mycobacterium farcinogenes strain 3753 RpoB gene, complete cds Length = 3916 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2767 acgccggcgggcagctcgtcg 2747
>gb|AY262738.1| Mycobacterium senegalense strain CIP 104941 RpoB gene, complete cds Length = 3898 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2767 acgccggcgggcagctcgtcg 2747
>gb|AY262737.1| Mycobacterium porcinum strain CIP 105392 RpoB gene, complete cds Length = 3902 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2771 acgccggcgggcagctcgtcg 2751
>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence Length = 103960 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 82385 tggaggaagtacggccaaaaa 82405
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete sequence Length = 89154 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 71651 tggaggaagtacggccaaaaa 71631
>gb|AC154449.2| Mus musculus BAC clone RP24-168F5 from chromosome 16, complete sequence Length = 137395 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tgtccagcgctatgtcggtgctggg 208 ||||||| ||||||||||||||||| Sbjct: 59953 tgtccagggctatgtcggtgctggg 59977
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1002 ggatcatttggcaataacgtt 1022 ||||||||||||||||||||| Sbjct: 1146714 ggatcatttggcaataacgtt 1146694
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151302 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 615 ttgccaaacctcatcagcttc 635 ||||||||||||||||||||| Sbjct: 10508 ttgccaaacctcatcagcttc 10528
>gb|AY080621.1| Arabidopsis thaliana At3g01970 mRNA sequence Length = 865 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 462 tggaggaagtacggccaaaaa 482
>gb|BT024684.1| Arabidopsis thaliana At3g01970 mRNA, complete cds Length = 444 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 208 tggaggaagtacggccaaaaa 228
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 823644 ctactacggccagcacacctg 823624
>gb|AF426251.1|AF426251 Arabidopsis thaliana WRKY transcription factor 45 (WRKY45) mRNA, complete cds Length = 444 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 208 tggaggaagtacggccaaaaa 228
>emb|BX047953.1|CNS0995X Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC22DC01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 979 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 gctgcacagcatgctgcaggg 124 ||||||||||||||||||||| Sbjct: 537 gctgcacagcatgctgcaggg 557
>emb|Z14314.1|MLB1790G M.leprae genes rplL, rpoB, rpoC, end, rpsL, rpsG, efg, tuf, rpsJ, rplC for ribosomal protein L7, RNA polymerase beta subunit, RNA polymerase beta' subunit, endonuclease, ribosomal protein S7, ribosomal protein S12, elongation factor G, elongation factor Tu, ribosomal protein S10, ribosomal protein L3 and mkl gene Length = 37617 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 6702 acgccggcgggcagctcgtcg 6682
>gb|AY085246.1| Arabidopsis thaliana clone 1415 mRNA, complete sequence Length = 548 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 231 tggaggaagtacggccaaaaa 251
>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10 Length = 348950 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 275262 acgccggcgggcagctcgtcg 275282
>gb|AY826856.1| Isochrysis galbana clone ISGG1 chloroplast geranylgeranyl reductase/hydrogenase mRNA, complete cds; nuclear gene for chloroplast product Length = 1421 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ggcgctcaccgccggcggcag 63 ||||||||||||||||||||| Sbjct: 1033 ggcgctcaccgccggcggcag 1053
>emb|CR861023.1| Pongo pygmaeus mRNA; cDNA DKFZp470N0914 (from clone DKFZp470N0914) Length = 2283 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 ctagtaatattttattgtgaa 1117 ||||||||||||||||||||| Sbjct: 748 ctagtaatattttattgtgaa 768
>dbj|AK118457.1| Arabidopsis thaliana At3g01970 mRNA for putative WRKY-like transcriptional regulator protein, complete cds, clone: RAFL19-70-A15 Length = 696 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 320 tggaggaagtacggccaaaaa 340
>emb|BX825626.1|CNS0A68D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL50ZB12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 615 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 250 tggaggaagtacggccaaaaa 270
>emb|BX825422.1|CNS0A68M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZB09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 664 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 210 tggaggaagtacggccaaaaa 230
>gb|AY859704.1| Mycobacterium novocastrense CIP 105546 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859702.1| Mycobacterium elephantis CIP 106831 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859701.1| Mycobacterium pulveris CIP 106804 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859700.1| Mycobacterium phlei CIP 105389 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859699.1| Mycobacterium moriokaense CIP 105393 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859698.1| Mycobacterium flavescens CIP 104533 RNA polymerase subunit B (rpoB) gene, partial cds Length = 714 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859697.1| Mycobacterium alvei CIP 103464 RNA polymerase subunit B (rpoB) gene, partial cds Length = 723 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 167 acgccggcgggcagctcgtcg 147
>gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymerase subunit B (rpoB) gene, complete cds Length = 3934 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 2782 acgccggcgggcagctcgtcg 2762
>gb|DQ137416.1| Mycobacterium jacuzzii RpoB (rpoB) gene, partial cds Length = 738 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 174 acgccggcgggcagctcgtcg 154
>emb|AL157791.4|CNS01RG8 Human chromosome 14 DNA sequence BAC R-647O20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191960 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 ctagtaatattttattgtgaa 1117 ||||||||||||||||||||| Sbjct: 61649 ctagtaatattttattgtgaa 61669
>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79383 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 527 ctactacggccagcacacctg 547 ||||||||||||||||||||| Sbjct: 44280 ctactacggccagcacacctg 44300
>gb|AY684063.1| Mycobacterium senegalense strain ATCC BAA-849 RNA polymerase beta gene, partial cds Length = 687 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 140 acgccggcgggcagctcgtcg 120
>gb|AY684062.1| Mycobacterium senegalense strain MF-1925 RNA polymerase beta gene, partial cds Length = 687 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 140 acgccggcgggcagctcgtcg 120
>gb|AY684061.1| Mycobacterium senegalense strain MF-1816 RNA polymerase beta gene, partial cds Length = 720 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 164 acgccggcgggcagctcgtcg 144
>gb|AY684060.1| Mycobacterium senegalense strain ATCC BAA-850 RNA polymerase beta gene, partial cds Length = 687 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 140 acgccggcgggcagctcgtcg 120
>gb|AY684059.1| Mycobacterium senegalense strain MF-378 RNA polymerase beta gene, partial cds Length = 720 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 164 acgccggcgggcagctcgtcg 144
>gb|AY684058.1| Mycobacterium senegalense strain ATCC 35755 RNA polymerase beta gene, partial cds Length = 687 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 140 acgccggcgggcagctcgtcg 120
>gb|AY684057.1| Mycobacterium senegalense strain MF-417 RNA polymerase beta gene, partial cds Length = 720 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 164 acgccggcgggcagctcgtcg 144
>gb|AY684056.1| Mycobacterium senegalense strain ATCC 35796 RNA polymerase beta gene, partial cds Length = 687 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 820 acgccggcgggcagctcgtcg 840 ||||||||||||||||||||| Sbjct: 140 acgccggcgggcagctcgtcg 120
>gb|U63815.1|ATU63815 Arabidopsis thaliana AT.I.24-1, AT.I.24-2, AT.I.24-3, AT.I.24-4, AT.I.24-5, AT.I.24-6, AT.I.24-9 and AT.I.24-14 genes, partial cds, AT.I.24-7, ascorbate peroxidase (ATHAPX1), EF-1alpha-A1, -A2 and -A3 (EF-1alpha) and AT.I.24-13 genes, complete cds Length = 63093 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tggaggaagtacggccaaaaa 404 ||||||||||||||||||||| Sbjct: 12185 tggaggaagtacggccaaaaa 12205 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 195,471,192 Number of extensions: 11686249 Number of successful extensions: 254189 Number of sequences better than 10.0: 75 Number of HSP's gapped: 254188 Number of HSP's successfully gapped: 94 Length of query: 1255 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1232 Effective length of database: 18,503,978,556 Effective search space: 22796901580992 Effective search space used: 22796901580992 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)