ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf97m23 |
|---|---|
| Clone Library Name | barley_pub |
>O49344:PSBP2_ARATH Oxygen-evolving enhancer protein 2-2, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 265 Score = 37.4 bits (85), Expect = 0.11 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 19/206 (9%) Frame = +3 Query: 231 SPTPHPPNGGATPLLVGIANTRSWSQYYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKA 410 SP P G A + + Y G GF I++P ++ E E Y G Sbjct: 74 SPAPXAAYGEAANVFGKPKKNTDFLPYTGEGFKIQIPSKWNPSKEIE-------YPG--- 123 Query: 411 KVRAYAARFASPDRSELVSVVIKPSNQLKITFLEAKD--ITELGTLKEASKLFVPGSAK- 581 +V + F D + VSV+I P+++ IT + + ++++ L + +V +A Sbjct: 124 QVLRFEDNF---DATSNVSVMITPTDKKSITDYGSPEQFLSQVNYLL-GKQAYVGETASE 179 Query: 582 -------IYSARTIKVKDQE-GIRMYYFYEF-------GFDKQHVALMATVDSGKTYIAA 716 + +A ++ QE G + YY+ +H + ATV+ GK YI Sbjct: 180 GGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICK 239 Query: 717 ATAPETRW-ETDGVTLRSAAVSMSLA 791 A A + RW + + +AA S S+A Sbjct: 240 AQAGDKRWFKGARKFVENAATSFSVA 265
>O49292:TL30_ARATH Thylakoid lumenal 29.8 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 274 Score = 35.4 bits (80), Expect = 0.41 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 6/165 (3%) Frame = +3 Query: 312 YGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQ 491 +G G+S +P +F P+D++ D RFASP L SV++ P + Sbjct: 120 HGVGWSPIIPYAFS---VPQDWNEVPVSIADLGGTEI-DLRFASPKEGRL-SVIVAPVLR 174 Query: 492 LKITFLEAKDITELGTLKEASKLFVPG------SAKIYSARTIKVKDQEGIRMYYFYEFG 653 + I +G + F P K+ S+ V + +G R+YY +F Sbjct: 175 FADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSN---VAEHDG-RLYY--QFE 228 Query: 654 FDKQHVALMATVDSGKTYIAAATAPETRWETDGVTLRSAAVSMSL 788 + HV + AT + Y+ + T +W+ L+ A S + Sbjct: 229 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273
>P11594:PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplast precursor - Sinapis| alba (White mustard) (Brassica hirta) Length = 260 Score = 33.9 bits (76), Expect = 1.2 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 8/172 (4%) Frame = +3 Query: 300 WSQYYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIK 479 ++ Y G GF ++VP ++ E E + + Y D + +P + ++ Sbjct: 92 FTAYSGDGFQVQVPAKWNPSREVE-YPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGS 150 Query: 480 PSNQL-KITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYFY---- 644 P L ++ +L K T E F + + ++D G YY Sbjct: 151 PEEFLSQVNYLLGKQAYFGETASEGG--FDNNAVATANILETNIQDVGGKPYYYLSVLTR 208 Query: 645 --EFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 791 + +H + ATV+ GK YI A A + RW + + AA S S+A Sbjct: 209 TADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>Q9SLQ8:PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplast precursor - Cucumis| sativus (Cucumber) Length = 263 Score = 33.9 bits (76), Expect = 1.2 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 11/155 (7%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF + +P ++ E E F + Y D + + +P + + P Sbjct: 98 YSGDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEE 156 Query: 489 QL-KITFLEAKDITELGTLKEASKLFVP---GSAKIYSARTIKVKDQEGIRMYYFYEF-- 650 L K+ +L K T E F P +A I A V ++ YYF Sbjct: 157 FLSKVDYLLGKQAYFGKTASEGG--FDPDAVATANILEATASNVNGKD----YYFVSVLT 210 Query: 651 -----GFDKQHVALMATVDSGKTYIAAATAPETRW 740 +H + ATV+ GK YI A A + RW Sbjct: 211 RTADGDEGGKHQLITATVNDGKLYICKAQAGDKRW 245
>P10357:V70K_TYMV 69 kDa protein - Turnip yellow mosaic virus| Length = 628 Score = 33.5 bits (75), Expect = 1.5 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = +2 Query: 5 VARHGTRPPPPRPFASLSKAT------TAMPQTNPRASALP-VRRH 121 +A H TR PPPRP T + +P+T+PR LP RRH Sbjct: 246 LAPHSTRDPPPRPITPGPSNTHDLRPLSVLPRTSPRRGLLPNPRRH 291
>P93566:PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplast precursor - Solanum| tuberosum (Potato) Length = 260 Score = 33.5 bits (75), Expect = 1.5 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 17/178 (9%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF +++P ++ E E F + Y D + +P + ++ P Sbjct: 95 YNGDGFKLQIPAKWNPSKEIE-FPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEE 153 Query: 489 QL-KITFLEAKDI---------------TELGTLKEASKLFVPGSAKIYSARTIKVKDQE 620 L K+ +L K L EAS V G Y + + D + Sbjct: 154 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGD 213 Query: 621 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 791 E G +H + ATV+ GK YI A A + RW + +AA S S+A Sbjct: 214 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>Q40407:PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplast precursor -| Narcissus pseudonarcissus (Daffodil) Length = 265 Score = 33.5 bits (75), Expect = 1.5 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Frame = +3 Query: 315 GSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQL 494 G GF I +P ++ E E F + Y D + +P + + P L Sbjct: 102 GDGFKILIPSKWNPSKEVE-FPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFL 160 Query: 495 -KITFLEAKDITELGTLKEASKLFVPGSAKIY-----SARTIKVKDQEGIRMYYFYEFGF 656 ++ +L K T+ E F P + + S + KD I + G Sbjct: 161 SQVDYLLGKQAYFGKTISEGG--FEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGD 218 Query: 657 DK-QHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 791 + +H+ + ATV GK YI A A + RW + SAA S S A Sbjct: 219 EGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265
>Q42029:PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 263 Score = 33.5 bits (75), Expect = 1.5 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 18/179 (10%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF ++VP ++ E E Y G +V + F D + ++V++ P++ Sbjct: 98 YNGDGFKVQVPAKWNPSKEIE-------YPG---QVLRFEDNF---DATSNLNVMVTPTD 144 Query: 489 QLKITFLEAKD--ITELGTLKEASKLFVPGSAK-------IYSARTIKVKDQE-GIRMYY 638 + IT + + ++++ L F +++ + +A ++ QE G + YY Sbjct: 145 KKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYY 204 Query: 639 FYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 791 + +H + ATV+ GK YI A A + RW + + SAA S S+A Sbjct: 205 YLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>Q04127:PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplast precursor -| Nicotiana tabacum (Common tobacco) Length = 266 Score = 33.1 bits (74), Expect = 2.0 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF +++P ++ E E Y G +V + F D + V V I P++ Sbjct: 101 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 147 Query: 489 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 635 + IT FL D LG + K G S + A ++ E G + Y Sbjct: 148 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQY 206 Query: 636 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 791 Y+ +H + ATV+ GK YI A A + RW + + A S SLA Sbjct: 207 YYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>P29795:PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplast precursor - Solanum| lycopersicum (Tomato) (Lycopersicon esculentum) Length = 258 Score = 32.7 bits (73), Expect = 2.6 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 17/178 (9%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF ++VP ++ E E + + Y D + +P + ++ P Sbjct: 93 YNGDGFKLQVPAKWNPSKEVE-YPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEE 151 Query: 489 QL-KITFLEAKDI------TELG---------TLKEASKLFVPGSAKIYSARTIKVKDQE 620 L K+ +L K +E G L EAS V G Y + + D + Sbjct: 152 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGD 211 Query: 621 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 791 E G +H + ATV+ GK YI A A + RW + +AA S S+A Sbjct: 212 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>O49080:PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplast precursor -| Fritillaria agrestis (Stinkbells) Length = 264 Score = 32.7 bits (73), Expect = 2.6 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 9/153 (5%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF++ +P ++ E E F + Y D V + + +P + ++ P Sbjct: 99 YTGDGFNLLIPAKWNPSKEVE-FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157 Query: 489 QLK-ITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQE-GIRMYYFYEF---- 650 L + +L K T E F P S + +A ++V G + YY Sbjct: 158 FLSTVDYLLGKQAYSGKTASEGG--FDPDS--VATANILEVSTPVVGGKQYYNISVLTRT 213 Query: 651 ---GFDKQHVALMATVDSGKTYIAAATAPETRW 740 +H + ATV GK YI A A + RW Sbjct: 214 ADGDEGGKHHVISATVTDGKLYICKAQAGDKRW 246
>P18212:PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplast precursor -| Nicotiana tabacum (Common tobacco) Length = 265 Score = 32.7 bits (73), Expect = 2.6 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF +++P ++ E E Y G +V + F D + V V I P++ Sbjct: 100 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 146 Query: 489 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 635 + IT FL D LG + K G S + A ++ E G + Y Sbjct: 147 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPY 205 Query: 636 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 791 Y+ +H + ATV+ GK YI A A + RW + + A S SLA Sbjct: 206 YYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>P82658:TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 229 Score = 31.6 bits (70), Expect = 5.9 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = +3 Query: 564 VPGSAKIYSARTIKVKDQEGIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWE 743 + G+ K+ S KD+ G ++YY YE +H + T + Y AP W Sbjct: 155 IAGADKVVSEER---KDETG-QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWN 210 Query: 744 TDGVTL 761 D TL Sbjct: 211 RDHDTL 216
>Q9UL51:HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 - Homo sapiens (Human) Length = 889 Score = 31.6 bits (70), Expect = 5.9 Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 3/78 (3%) Frame = +2 Query: 23 RPPPPRPFASLSKATTAMPQTNPRASALP---VRRHTPRVHFXXXXXXXXXXXXNEPRRS 193 +PPPP P A A PQ PRA ALP PR R S Sbjct: 34 QPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGPRGRL-------------RSRDS 80 Query: 194 YCGR*GAPFGGTVTDASP 247 CGR G P + SP Sbjct: 81 SCGRPGTPGAASTAKGSP 98
>P12302:PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplast precursor -| Spinacia oleracea (Spinach) Length = 267 Score = 31.2 bits (69), Expect = 7.7 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 16/160 (10%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF + VP ++ E E F + Y D + + P + ++ P + Sbjct: 102 YNGDGFKLLVPSKWNPSKEKE-FPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPED 160 Query: 489 QL-KITFLEAKD---------------ITELGTLKEASKLFVPGSAKIYSARTIKVKDQE 620 L ++ +L K + + E+S V G K Y + T+ + + Sbjct: 161 FLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDG--KQYYSITVLTRTAD 218 Query: 621 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW 740 G +H + ATV GK YI A A + RW Sbjct: 219 GDE---------GGKHQVIAATVKDGKLYICKAQAGDKRW 249
>Q7DM39:PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplast precursor -| Nicotiana tabacum (Common tobacco) Length = 268 Score = 31.2 bits (69), Expect = 7.7 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 15/176 (8%) Frame = +3 Query: 309 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 488 Y G GF ++VP ++ E E F + Y D + +P + ++ P Sbjct: 103 YNGDGFKLQVPAKWNPSKEVE-FPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEE 161 Query: 489 QL-KITFLEAKDIT----------ELGTLKEASKLFVPGSA---KIYSARTIKVKDQEGI 626 L ++ FL K E G + A+ L S K Y ++ + +G Sbjct: 162 FLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGD 221 Query: 627 RMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 791 +H + ATV+ GK YI A A + RW + + +AA S S+A Sbjct: 222 E---------GGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 168,050,561 Number of extensions: 3475843 Number of successful extensions: 11864 Number of sequences better than 10.0: 16 Number of HSP's gapped: 11832 Number of HSP's successfully gapped: 16 Length of query: 357 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 243 Effective length of database: 69,416,809 Effective search space: 16868284587 Effective search space used: 16868284587 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
