ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf97k14 |
|---|---|
| Clone Library Name | barley_pub |
>Q24143:HR96_DROME Nuclear hormone receptor HR96 - Drosophila melanogaster (Fruit fly)| Length = 723 Score = 36.2 bits (82), Expect = 0.62 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 5/141 (3%) Frame = -3 Query: 1102 NLQDECPTQQGVGDDHVPPAVTSATT---HSGTVLTEEAERHDGGGNGGSTRQASVPSS- 935 N D C G DH PA +S++ +SG+ ++ D G NG S RQAS P + Sbjct: 102 NGTDACDADGGEERDHKAPADSSSSNLDHYSGSQDSQSCGSADSGANGCSGRQASSPGTQ 161 Query: 934 -NHQGLGVENVPHQRELHPNQLCQHAAPSFRIGTTMIRRYGSGLEQGRPDPVVDQLTHAD 758 N + E + Q P++ Q R I + Sbjct: 162 VNPLQMTAEKIVDQIVSDPDRASQAINRLMRTQKEAI---------------------SV 200 Query: 757 MEKVVGSLQDLLRVIRRSHVL 695 MEKV+ S +D LR++ SH++ Sbjct: 201 MEKVISSQKDALRLV--SHLI 219
>Q8PLJ8:ISPG_XANAC 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase - Xanthomonas| axonopodis pv. citri Length = 421 Score = 35.0 bits (79), Expect = 1.4 Identities = 24/109 (22%), Positives = 46/109 (42%) Frame = -3 Query: 823 RYGSGLEQGRPDPVVDQLTHADMEKVVGSLQDLLRVIRRSHVLVRLVTFRYRHLKAVEEL 644 + GS G VV +T+ D + GS++ + + R +VRL A+ + Sbjct: 26 KIGSVTVGGGHPVVVQSMTNTDTADIAGSVKQVADLWRAGSEMVRLTVNNAESAAAIPRI 85 Query: 643 PDAVKARGLEGVYPLPVLDDAHHEHQQ*RGE*GPATDVLVQHVGRPGGL 497 D ++ G+E +P++ D H+ Q + L ++ PG + Sbjct: 86 VDKLRMMGIE----VPLIGDFHYNGHQLLAAEPACAEALAKYRINPGNV 130
>Q24760:FRIZ_DROVI Frizzled precursor - Drosophila virilis (Fruit fly)| Length = 583 Score = 35.0 bits (79), Expect = 1.4 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Frame = +3 Query: 1644 PVKRGDGKRASSKPSAHCQDTWCSFLWSGLT-CCQALFAEASTIAFAPTSMGLWITGEGS 1820 PVK G + S+ H Q T C+ L+ L CC A FA S +AFA W G Sbjct: 317 PVKLGRLQMMSTITQGHRQTTACTVLFMALYFCCMAAFAWWSCLAFA------WFLAAGL 370 Query: 1821 K-DHTTINQKYNL 1856 K H I K +L Sbjct: 371 KWGHEAIENKSHL 383
>P18537:FRIZ_DROME Frizzled precursor - Drosophila melanogaster (Fruit fly)| Length = 581 Score = 35.0 bits (79), Expect = 1.4 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Frame = +3 Query: 1644 PVKRGDGKRASSKPSAHCQDTWCSFLWSGLT-CCQALFAEASTIAFAPTSMGLWITGEGS 1820 PVK G + S+ H Q T C+ L+ L CC A FA S +AFA W G Sbjct: 315 PVKLGRLQMMSTITQGHRQTTSCTVLFMALYFCCMAAFAWWSCLAFA------WFLAAGL 368 Query: 1821 K-DHTTINQKYNL 1856 K H I K +L Sbjct: 369 KWGHEAIENKSHL 381
>Q87A73:ISPG_XYLFT 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase - Xylella| fastidiosa (strain Temecula1 / ATCC 700964) Length = 417 Score = 34.7 bits (78), Expect = 1.8 Identities = 22/96 (22%), Positives = 43/96 (44%) Frame = -3 Query: 784 VVDQLTHADMEKVVGSLQDLLRVIRRSHVLVRLVTFRYRHLKAVEELPDAVKARGLEGVY 605 VV +T+ D VV S + + + R +VRL + A+ + + + G+E Sbjct: 35 VVQSMTNTDTADVVASTKQVAELWRAGSEMVRLTVNNAQSAAAIPRIAERLAMMGIE--- 91 Query: 604 PLPVLDDAHHEHQQ*RGE*GPATDVLVQHVGRPGGL 497 +P++ D H+ Q + +VL ++ PG + Sbjct: 92 -VPLIGDFHYNGHQLLADEPACAEVLAKYRINPGNV 126
>Q7MLJ0:Y1437_VIBVY Putative reductase VV1437 - Vibrio vulnificus (strain YJ016)| Length = 400 Score = 33.9 bits (76), Expect = 3.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +2 Query: 425 QDTITAYAMEDNDLWLRHLLTLVVQAAGAAYVLYKYVG 538 QDT+T ED +LW+ L V A G V Y Y+G Sbjct: 190 QDTVTVMGGEDWELWINALAEAGVLAEGCKTVAYSYIG 227
>Q8P9R7:ISPG_XANCP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase - Xanthomonas| campestris pv. campestris Length = 421 Score = 33.9 bits (76), Expect = 3.1 Identities = 20/91 (21%), Positives = 41/91 (45%) Frame = -3 Query: 835 TMIRRYGSGLEQGRPDPVVDQLTHADMEKVVGSLQDLLRVIRRSHVLVRLVTFRYRHLKA 656 T + G+ + G VV +T+ D + GS++ + + R +VRL A Sbjct: 22 TQAVKVGNVIVGGGHPVVVQSMTNTDTADIAGSVKQVAELWRAGSEMVRLTVNNAESAAA 81 Query: 655 VEELPDAVKARGLEGVYPLPVLDDAHHEHQQ 563 + + + ++ G+E +P++ D H+ Q Sbjct: 82 IPRIVEKLRMMGIE----VPLIGDFHYNGHQ 108
>Q8D8Y6:Y2829_VIBVU Putative reductase VV1_2829 - Vibrio vulnificus| Length = 400 Score = 33.5 bits (75), Expect = 4.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +2 Query: 425 QDTITAYAMEDNDLWLRHLLTLVVQAAGAAYVLYKYVG 538 QDT+T ED +LW+ L V A G V Y Y+G Sbjct: 190 QDTVTVMGGEDWELWINALAEAGVLADGCKTVAYSYIG 227
>P11369:POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 - Mus musculus (Mouse)| Length = 1281 Score = 33.5 bits (75), Expect = 4.0 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = +2 Query: 599 ERIYALKSSGLDSIRKFLDGFEVPVPERDKPYQDMASPDDPEEV 730 +R+Y+ K LD + KFLD ++VP +D+ + SP P+E+ Sbjct: 423 KRLYSTKLENLDEMDKFLDRYQVPKLNQDQ-VDHLNSPISPKEI 465
>P78559:MAP1A_HUMAN Microtubule-associated protein 1A - Homo sapiens (Human)| Length = 2805 Score = 33.5 bits (75), Expect = 4.0 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 12/104 (11%) Frame = -3 Query: 1048 PAVTSATTHSGTVLTEEAERHDGGGNGGSTRQASVP-SSNHQGLGVENVPHQRELHPNQL 872 P ++ T L+ E GG+GG AS + QG E PH+ EL P+ L Sbjct: 2394 PEGAERSSRPDTXLSPEQPVCPXGGSGGPPSSASPEVEAGPQGCXTEPRPHRGELSPSFL 2453 Query: 871 CQHAAPSF-----------RIGTTMIRRYGSGLEQGRPDPVVDQ 773 PS +G RR G G P PV D+ Sbjct: 2454 NPPLPPSIDDRDLSTEEVRLVGRGGRRRVGGPGTTGXPXPVTDE 2497
>O60315:ZEB2_HUMAN Zinc finger E-box-binding homeobox 2 - Homo sapiens (Human)| Length = 1214 Score = 33.1 bits (74), Expect = 5.2 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -3 Query: 1138 CPCRQYGPQQGYNLQDEC--PTQQGVGDDHVPPAVTSATTHSG 1016 C + +GY+++D C P +QGV ++PP +H+G Sbjct: 478 CKAEEISKLKGYHMKDPCSQPEEQGVTSPNIPPVGLPVVSHNG 520
>P09826:GLNA1_RHILV Glutamine synthetase 1 - Rhizobium leguminosarum bv. viciae| Length = 469 Score = 33.1 bits (74), Expect = 5.2 Identities = 13/41 (31%), Positives = 26/41 (63%) Frame = +2 Query: 551 LAASLLMFMVGVVKYGERIYALKSSGLDSIRKFLDGFEVPV 673 L+ S L ++ G++K+ + I A + +S ++F+ G+E PV Sbjct: 291 LSESCLFYIGGIIKHAKAINAFTNPSTNSYKRFVPGYEAPV 331
>Q9HU65:GLNA_PSEAE Glutamine synthetase - Pseudomonas aeruginosa| Length = 469 Score = 32.7 bits (73), Expect = 6.8 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +2 Query: 530 YVGRG-ALLAASLLMFMVGVVKYGERIYALKSSGLDSIRKFLDGFEVPV 673 + G G A L+ + L F+ G++K+G+ + + +S ++ + GFE PV Sbjct: 283 FAGEGYAGLSETALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPV 331
>Q6G1X4:ISPG_BARHE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase - Bartonella| henselae (Rochalimaea henselae) Length = 413 Score = 32.3 bits (72), Expect = 8.9 Identities = 24/107 (22%), Positives = 47/107 (43%) Frame = -3 Query: 817 GSGLEQGRPDPVVDQLTHADMEKVVGSLQDLLRVIRRSHVLVRLVTFRYRHLKAVEELPD 638 G L GR VV +T+ D V ++ + + + LVR+ RY AV ++ + Sbjct: 22 GDVLVGGRSPIVVQSMTNTDTADVDATVAQVAALWQAGSQLVRITVDRYEAAAAVPKIRE 81 Query: 637 AVKARGLEGVYPLPVLDDAHHEHQQ*RGE*GPATDVLVQHVGRPGGL 497 ++ G + +P++ D H+ + E + L ++ PG + Sbjct: 82 RLERLG----FVIPLVGDFHYIGHKLLSEHPACAEALAKYRINPGNV 124
>P22248:GLNA_AZOVI Glutamine synthetase - Azotobacter vinelandii| Length = 467 Score = 32.3 bits (72), Expect = 8.9 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +2 Query: 530 YVGRG-ALLAASLLMFMVGVVKYGERIYALKSSGLDSIRKFLDGFEVPV 673 + G G A L+ + L F+ G++K+G+ + + +S ++ + GFE PV Sbjct: 281 FAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPV 329 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 447,568,301 Number of extensions: 10987078 Number of successful extensions: 35441 Number of sequences better than 10.0: 15 Number of HSP's gapped: 35309 Number of HSP's successfully gapped: 15 Length of query: 770 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 649 Effective length of database: 67,496,744 Effective search space: 43805386856 Effective search space used: 43805386856 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
