ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf97k14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001074875.1| Oryza sativa (japonica cultivar-group) Os11g0639300 (Os11g0639300) mRNA, complete cds Length = 2276 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 306 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 365 Query: 476 cactt 480 ||||| Sbjct: 366 cactt 370
>gb|AC104846.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0004C07, complete sequence Length = 135425 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 21775 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 21834 Query: 476 cactt 480 ||||| Sbjct: 21835 cactt 21839 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Minus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 80724 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 80665 Query: 476 cactt 480 ||||| Sbjct: 80664 cactt 80660 Score = 46.1 bits (23), Expect = 0.57 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgcta 1947 ||||||||||||||||||||||| Sbjct: 78993 gtgtgggtggagatgttgtgcta 78971
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 24420684 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 24420743 Query: 476 cactt 480 ||||| Sbjct: 24420744 cactt 24420748 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Minus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 24479633 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 24479574 Query: 476 cactt 480 ||||| Sbjct: 24479573 cactt 24479569 Score = 50.1 bits (25), Expect = 0.036 Identities = 49/57 (85%) Strand = Plus / Minus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||| ||||||| || || ||||||| ||||| ||||||||||| ||||||||| Sbjct: 24383618 ctgctgctgcaccttggtgggcaggacaaaatcactgcctacgccatcgaggacaac 24383562 Score = 50.1 bits (25), Expect = 0.036 Identities = 58/69 (84%) Strand = Plus / Minus Query: 389 ttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctacgcc 448 ||||||||| |||| ||||| | || |||||||| ||||| |||||||| |||| | || Sbjct: 25184689 ttctgggcgcccttcatgctgctccatctcggcgggcaggagaccatcacggccttctcc 25184630 Query: 449 atggaggac 457 ||||||||| Sbjct: 25184629 atggaggac 25184621 Score = 46.1 bits (23), Expect = 0.57 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgcta 1947 ||||||||||||||||||||||| Sbjct: 24477902 gtgtgggtggagatgttgtgcta 24477880
>dbj|AK102044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081M11, full insert sequence Length = 2277 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Plus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctgcgg 475 ||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 307 ctcggggggcaggacaccatcaccgccttcgccgtggaggacaacgagctctggctgcgt 366 Query: 476 cactt 480 ||||| Sbjct: 367 cactt 371
>ref|NM_001051961.1| Oryza sativa (japonica cultivar-group) Os01g0953100 (Os01g0953100) mRNA, partial cds Length = 2821 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 325 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 383 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 2002 gtgtgggtggagatgctgtgctacgccgcc 2031
>ref|NM_001051960.1| Oryza sativa (japonica cultivar-group) Os01g0953000 (Os01g0953000) mRNA, complete cds Length = 2688 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 1830 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 1772 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 153 gtgtgggtggagatgctgtgctacgccgcc 124
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 41974907 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 41974965 Score = 65.9 bits (33), Expect = 6e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||||||||||| |||||||||||||| |||| | |||| ||||||||||| |||||| Sbjct: 33808049 cacctcggcggccaggacaccatcacggccttctccatcgaggacaacgagctctgg 33807993 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 41976584 gtgtgggtggagatgctgtgctacgccgcc 41976613
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 76984 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 77042 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 78661 gtgtgggtggagatgctgtgctacgccgcc 78690
>dbj|AK100594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106M03, full insert sequence Length = 2699 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 1831 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 1773 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 154 gtgtgggtggagatgctgtgctacgccgcc 125
>dbj|AK068882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K14, full insert sequence Length = 2823 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 326 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 384 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 2003 gtgtgggtggagatgctgtgctacgccgcc 2032
>dbj|AK064981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C07, full insert sequence Length = 2324 Score = 77.8 bits (39), Expect = 2e-10 Identities = 54/59 (91%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggct 471 ||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct: 372 cacctcggcgggcaggacaccatcaccgcattcgccatcgaggacaacgagctctggct 430 Score = 52.0 bits (26), Expect = 0.009 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1925 gtgtgggtggagatgttgtgctacgccgcc 1954 ||||||||||||||| |||||||||||||| Sbjct: 2049 gtgtgggtggagatgctgtgctacgccgcc 2078
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 75.8 bits (38), Expect = 6e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 368 gagcagcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacag 427 |||| ||||||||| |||||||||||||| | || |||||| |||||||||| || | | Sbjct: 2900150 gagcggcagcagctggtggcgttctgggcgccgttcctgctgctgcacctcggtggcccg 2900091 Query: 428 gacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||| |||||||||||||| || | ||||||||| | |||||| Sbjct: 2900090 gactccatcaccgcctactccctcgaggacaaccagctctgg 2900049 Score = 65.9 bits (33), Expect = 6e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 372 agcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggaca 431 |||||||||| |||| ||||||||| | || |||||| | ||||| || || ||||||| Sbjct: 3634572 agcagcagctggtggcattctgggcgcctttcctgctgctccaccttggtgggcaggaca 3634513 Query: 432 ccatcaccgcctacgccatggaggacaac 460 ||||| | ||||||||| ||||||||||| Sbjct: 3634512 ccatcgcggcctacgccgtggaggacaac 3634484 Score = 58.0 bits (29), Expect = 1e-04 Identities = 83/101 (82%) Strand = Plus / Minus Query: 374 cagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggacacc 433 |||||||| |||||||||||||| | || |||||||| ||||| || || | ||| | | Sbjct: 2948297 cagcagctgctggcgttctgggcgccgttgctgctggtccaccttggtggcccggataac 2948238 Query: 434 atcaccgcctacgccatggaggacaacgatctctggctgcg 474 |||| |||||||||||| |||||||| | |||||| |||| Sbjct: 2948237 atcagcgcctacgccatccaggacaaccagctctggttgcg 2948197 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||| | |||||||||||||| || || |||||||||| | || |||||||||| Sbjct: 2520667 gggtgtggttcgagatgttgtgctatgcggcgcaccactgcagcgaggagtcacatgcca 2520608 Query: 1983 ggcagctcagca 1994 ||||||| |||| Sbjct: 2520607 ggcagctgagca 2520596 Score = 52.0 bits (26), Expect = 0.009 Identities = 53/62 (85%) Strand = Plus / Plus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || |||||| | ||||||||||| | ||||| |||||| |||| Sbjct: 3743251 tggcgttctgggcgccgttcctgctgctccacctcggcggcccggacaacatcactgcct 3743310 Query: 444 ac 445 || Sbjct: 3743311 ac 3743312 Score = 50.1 bits (25), Expect = 0.036 Identities = 40/45 (88%) Strand = Plus / Minus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||||| ||||||| ||||||||||||| || | ||||||||| Sbjct: 6626236 ctcggcggtcaggacaacatcaccgcctactccttcgaggacaac 6626192 Score = 48.1 bits (24), Expect = 0.14 Identities = 39/44 (88%) Strand = Plus / Minus Query: 565 gctgatgttcatggtgggcgtcgtcaagtacggggagaggatat 608 |||||||||| | || || || |||||||||||||||||||||| Sbjct: 2948082 gctgatgttcgtcgtcggtgttgtcaagtacggggagaggatat 2948039 Score = 48.1 bits (24), Expect = 0.14 Identities = 30/32 (93%) Strand = Plus / Minus Query: 427 ggacaccatcaccgcctacgccatggaggaca 458 ||||| |||||||||||||||| ||||||||| Sbjct: 3508694 ggacaacatcaccgcctacgccctggaggaca 3508663 Score = 46.1 bits (23), Expect = 0.57 Identities = 50/59 (84%) Strand = Plus / Plus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgccta 444 |||||||||||| |||| | ||| ||||||||||||| | |||| |||||||||||| Sbjct: 4325507 gcgttctgggcgcccttcttcctgctgcacctcggcggccccgacagcatcaccgccta 4325565 Score = 44.1 bits (22), Expect = 2.2 Identities = 61/74 (82%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 ||||||||||||||||| ||| |||| || || ||||||||| || || ||||||| Sbjct: 6624752 gggtgtgggtggagatgctgtcttacgttgcttgcaactgcagcagagagtctcatgcca 6624693 Query: 1983 ggcagctcagcagc 1996 ||||||| |||||| Sbjct: 6624692 ggcagcttagcagc 6624679 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 2758814 ggacaacatcaccgcctactccttggaggacaa 2758846 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 catcaccgcctacgccatggaggacaacg 461 ||||||||||||| || |||||||||||| Sbjct: 3127960 catcaccgcctactccctggaggacaacg 3127932 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Minus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 3397547 ggacaacatcaccgcctactccttggaggacaa 3397515 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 3445386 ggacaacatcaccgcctactccttggaggacaa 3445418 Score = 42.1 bits (21), Expect = 8.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctac 445 |||||||||||| |||| | ||| | ||||||||||| | |||| ||||||||||||| Sbjct: 4332844 gcgttctgggcgcccttcttcctgctccacctcggcgggcccgacagcatcaccgcctac 4332785 Query: 446 g 446 | Sbjct: 4332784 g 4332784
>emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0049I21, complete sequence Length = 141935 Score = 75.8 bits (38), Expect = 6e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 368 gagcagcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacag 427 |||| ||||||||| |||||||||||||| | || |||||| |||||||||| || | | Sbjct: 32036 gagcggcagcagctggtggcgttctgggcgccgttcctgctgctgcacctcggtggcccg 31977 Query: 428 gacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||| |||||||||||||| || | ||||||||| | |||||| Sbjct: 31976 gactccatcaccgcctactccctcgaggacaaccagctctgg 31935 Score = 58.0 bits (29), Expect = 1e-04 Identities = 83/101 (82%) Strand = Plus / Minus Query: 374 cagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggacacc 433 |||||||| |||||||||||||| | || |||||||| ||||| || || | ||| | | Sbjct: 80183 cagcagctgctggcgttctgggcgccgttgctgctggtccaccttggtggcccggataac 80124 Query: 434 atcaccgcctacgccatggaggacaacgatctctggctgcg 474 |||| |||||||||||| |||||||| | |||||| |||| Sbjct: 80123 atcagcgcctacgccatccaggacaaccagctctggttgcg 80083 Score = 48.1 bits (24), Expect = 0.14 Identities = 39/44 (88%) Strand = Plus / Minus Query: 565 gctgatgttcatggtgggcgtcgtcaagtacggggagaggatat 608 |||||||||| | || || || |||||||||||||||||||||| Sbjct: 79968 gctgatgttcgtcgtcggtgttgtcaagtacggggagaggatat 79925
>ref|NM_001065235.1| Oryza sativa (japonica cultivar-group) Os07g0105800 (Os07g0105800) mRNA, complete cds Length = 2445 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||| ||||| | ||||||||||||||||||| || | ||||||||||| Sbjct: 382 ctgctgctccacctgggcggcccggacaccatcaccgcctactccctcgaggacaacgag 441 Query: 464 ctctggctgcggcacttg 481 |||||||| || |||||| Sbjct: 442 ctctggctccgccacttg 459
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 67.9 bits (34), Expect = 2e-07 Identities = 76/90 (84%) Strand = Plus / Plus Query: 371 cagcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggac 430 ||||| ||||| ||||| |||||||| | || || ||| | |||||||| || |||||| Sbjct: 5537643 cagcatcagctgatggccttctgggcaccattcctcctgctccacctcggtgggcaggac 5537702 Query: 431 accatcaccgcctacgccatggaggacaac 460 | |||||||||||||||||| ||||||||| Sbjct: 5537703 agcatcaccgcctacgccatcgaggacaac 5537732 Score = 42.1 bits (21), Expect = 8.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 883 gatgcagctctctctgatgcgggacattctctacaccaagg 923 |||||||||||| ||||||| ||||| |||||||||||| Sbjct: 5538149 gatgcagctctccctgatgcacgacatcttctacaccaagg 5538189
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||| ||||| | ||||||||||||||||||| || | ||||||||||| Sbjct: 326118 ctgctgctccacctgggcggcccggacaccatcaccgcctactccctcgaggacaacgag 326177 Query: 464 ctctggctgcggcacttg 481 |||||||| || |||||| Sbjct: 326178 ctctggctccgccacttg 326195
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||| ||||| | ||||||||||||||||||| || | ||||||||||| Sbjct: 160982 ctgctgctccacctgggcggcccggacaccatcaccgcctactccctcgaggacaacgag 161041 Query: 464 ctctggctgcggcacttg 481 |||||||| || |||||| Sbjct: 161042 ctctggctccgccacttg 161059
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||| ||||| | ||||||||||||||||||| || | ||||||||||| Sbjct: 50356 ctgctgctccacctgggcggcccggacaccatcaccgcctactccctcgaggacaacgag 50415 Query: 464 ctctggctgcggcacttg 481 |||||||| || |||||| Sbjct: 50416 ctctggctccgccacttg 50433
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 67.9 bits (34), Expect = 2e-07 Identities = 67/78 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||| ||||| | ||||||||||||||||||| || | ||||||||||| Sbjct: 78117 ctgctgctccacctgggcggcccggacaccatcaccgcctactccctcgaggacaacgag 78176 Query: 464 ctctggctgcggcacttg 481 |||||||| || |||||| Sbjct: 78177 ctctggctccgccacttg 78194
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 67.9 bits (34), Expect = 2e-07 Identities = 76/90 (84%) Strand = Plus / Plus Query: 371 cagcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggac 430 ||||| ||||| ||||| |||||||| | || || ||| | |||||||| || |||||| Sbjct: 63871 cagcatcagctgatggccttctgggcaccattcctcctgctccacctcggtgggcaggac 63930 Query: 431 accatcaccgcctacgccatggaggacaac 460 | |||||||||||||||||| ||||||||| Sbjct: 63931 agcatcaccgcctacgccatcgaggacaac 63960 Score = 42.1 bits (21), Expect = 8.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 883 gatgcagctctctctgatgcgggacattctctacaccaagg 923 |||||||||||| ||||||| ||||| |||||||||||| Sbjct: 64377 gatgcagctctccctgatgcacgacatcttctacaccaagg 64417
>ref|NM_001051060.1| Oryza sativa (japonica cultivar-group) Os01g0798800 (Os01g0798800) mRNA, complete cds Length = 2126 Score = 65.9 bits (33), Expect = 6e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||||||||||| |||||||||||||| |||| | |||| ||||||||||| |||||| Sbjct: 337 cacctcggcggccaggacaccatcacggccttctccatcgaggacaacgagctctgg 393
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15, complete sequence Length = 130618 Score = 65.9 bits (33), Expect = 6e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 372 agcagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggaca 431 |||||||||| |||| ||||||||| | || |||||| | ||||| || || ||||||| Sbjct: 100864 agcagcagctggtggcattctgggcgcctttcctgctgctccaccttggtgggcaggaca 100805 Query: 432 ccatcaccgcctacgccatggaggacaac 460 ||||| | ||||||||| ||||||||||| Sbjct: 100804 ccatcgcggcctacgccgtggaggacaac 100776
>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0691E06 Length = 166497 Score = 65.9 bits (33), Expect = 6e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||||||||||| |||||||||||||| |||| | |||| ||||||||||| |||||| Sbjct: 47096 cacctcggcggccaggacaccatcacggccttctccatcgaggacaacgagctctgg 47040
>dbj|AK064257.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C11, full insert sequence Length = 2126 Score = 65.9 bits (33), Expect = 6e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctgg 469 ||||||||||| |||||||||||||| |||| | |||| ||||||||||| |||||| Sbjct: 337 cacctcggcggccaggacaccatcacggccttctccatcgaggacaacgagctctgg 393
>ref|NM_001070938.1| Oryza sativa (japonica cultivar-group) Os10g0348600 (Os10g0348600) mRNA, complete cds Length = 2530 Score = 61.9 bits (31), Expect = 1e-05 Identities = 61/71 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||||||||| | |||||||||||||||||| || | || |||||||| Sbjct: 317 ctgctgctccacctcggcggccccgacaccatcaccgcctactccctcgatgacaacgag 376 Query: 464 ctctggctgcg 474 ||||||||||| Sbjct: 377 ctctggctgcg 387
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 61.9 bits (31), Expect = 1e-05 Identities = 76/91 (83%) Strand = Plus / Minus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || || ||| | ||||||||||| | ||||| ||||||||||| Sbjct: 35675 tggcgttctgggcgccgttcctcctgctccacctcggcggcccggacaacatcaccgcct 35616 Query: 444 acgccatggaggacaacgatctctggctgcg 474 |||| |||| |||||| ||||||||||| Sbjct: 35615 acgcgctggatgacaacagcctctggctgcg 35585
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 61.9 bits (31), Expect = 1e-05 Identities = 61/71 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||||||||| | |||||||||||||||||| || | || |||||||| Sbjct: 16382 ctgctgctccacctcggcggccccgacaccatcaccgcctactccctcgatgacaacgag 16441 Query: 464 ctctggctgcg 474 ||||||||||| Sbjct: 16442 ctctggctgcg 16452
>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence Length = 146538 Score = 61.9 bits (31), Expect = 1e-05 Identities = 61/71 (85%) Strand = Plus / Minus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||||||||| | |||||||||||||||||| || | || |||||||| Sbjct: 34332 ctgctgctccacctcggcggccccgacaccatcaccgcctactccctcgatgacaacgag 34273 Query: 464 ctctggctgcg 474 ||||||||||| Sbjct: 34272 ctctggctgcg 34262
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 61.9 bits (31), Expect = 1e-05 Identities = 61/71 (85%) Strand = Plus / Minus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||||||||| | |||||||||||||||||| || | || |||||||| Sbjct: 10017573 ctgctgctccacctcggcggccccgacaccatcaccgcctactccctcgatgacaacgag 10017514 Query: 464 ctctggctgcg 474 ||||||||||| Sbjct: 10017513 ctctggctgcg 10017503 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||||||||||||||| ||||| || | ||| |||||| | || || ||||||| Sbjct: 5923465 gggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgcca 5923406 Query: 1983 ggcagctcagca 1994 |||||||||||| Sbjct: 5923405 ggcagctcagca 5923394
>dbj|AK106921.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B05, full insert sequence Length = 2530 Score = 61.9 bits (31), Expect = 1e-05 Identities = 61/71 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgat 463 |||||| | ||||||||||| | |||||||||||||||||| || | || |||||||| Sbjct: 317 ctgctgctccacctcggcggccccgacaccatcaccgcctactccctcgatgacaacgag 376 Query: 464 ctctggctgcg 474 ||||||||||| Sbjct: 377 ctctggctgcg 387
>emb|CR855040.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0093M15, complete sequence Length = 77107 Score = 60.0 bits (30), Expect = 4e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || |||||| | ||||||||||| | ||||| ||||||||||| Sbjct: 5397 tggcgttctgggcgccgttcctgctgctccacctcggcggcccggacaacatcaccgcct 5456 Query: 444 ac 445 || Sbjct: 5457 ac 5458
>emb|AL662951.3|OSJN00154 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011E07, complete sequence Length = 165094 Score = 58.0 bits (29), Expect = 1e-04 Identities = 83/101 (82%) Strand = Plus / Minus Query: 374 cagcagctcatggcgttctgggcgtccttactgctggtgcacctcggcggacaggacacc 433 |||||||| |||||||||||||| | || |||||||| ||||| || || | ||| | | Sbjct: 9372 cagcagctgctggcgttctgggcgccgttgctgctggtccaccttggtggcccggataac 9313 Query: 434 atcaccgcctacgccatggaggacaacgatctctggctgcg 474 |||| |||||||||||| |||||||| | |||||| |||| Sbjct: 9312 atcagcgcctacgccatccaggacaaccagctctggttgcg 9272 Score = 48.1 bits (24), Expect = 0.14 Identities = 39/44 (88%) Strand = Plus / Minus Query: 565 gctgatgttcatggtgggcgtcgtcaagtacggggagaggatat 608 |||||||||| | || || || |||||||||||||||||||||| Sbjct: 9157 gctgatgttcgtcgtcggtgttgtcaagtacggggagaggatat 9114
>ref|NM_001070810.1| Oryza sativa (japonica cultivar-group) Os10g0190500 (Os10g0190500) mRNA, complete cds Length = 2712 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||||||||||||||| ||||| || | ||| |||||| | || || ||||||| Sbjct: 2213 gggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgcca 2272 Query: 1983 ggcagctcagca 1994 |||||||||||| Sbjct: 2273 ggcagctcagca 2284
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||||||||||||||| ||||| || | ||| |||||| | || || ||||||| Sbjct: 418 gggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgcca 477 Query: 1983 ggcagctcagca 1994 |||||||||||| Sbjct: 478 ggcagctcagca 489
>gb|AC097278.6| Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence Length = 151673 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||||||||||||||| ||||| || | ||| |||||| | || || ||||||| Sbjct: 142848 gggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgcca 142907 Query: 1983 ggcagctcagca 1994 |||||||||||| Sbjct: 142908 ggcagctcagca 142919
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 56.0 bits (28), Expect = 6e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctg 472 ||||| ||||| |||||||||||||| |||| | | | | |||||||||| || |||||| Sbjct: 24919090 caccttggcgggcaggacaccatcactgccttctcgaggcaggacaacgagctgtggctg 24919031 Query: 473 cggcacttgctaaccctggt 492 |||||| |||| | |||||| Sbjct: 24919030 cggcacctgctgaacctggt 24919011
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20, complete sequence Length = 138572 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||| | |||||||||||||| || || |||||||||| | || |||||||||| Sbjct: 136569 gggtgtggttcgagatgttgtgctatgcggcgcaccactgcagcgaggagtcacatgcca 136510 Query: 1983 ggcagctcagca 1994 ||||||| |||| Sbjct: 136509 ggcagctgagca 136498
>dbj|AK070455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049F05, full insert sequence Length = 2713 Score = 56.0 bits (28), Expect = 6e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 |||||||||||||||||||| ||||| || | ||| |||||| | || || ||||||| Sbjct: 2214 gggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgcca 2273 Query: 1983 ggcagctcagca 1994 |||||||||||| Sbjct: 2274 ggcagctcagca 2285
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 56.0 bits (28), Expect = 6e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacgatctctggctg 472 ||||| ||||| |||||||||||||| |||| | | | | |||||||||| || |||||| Sbjct: 45778 caccttggcgggcaggacaccatcactgccttctcgaggcaggacaacgagctgtggctg 45837 Query: 473 cggcacttgctaaccctggt 492 |||||| |||| | |||||| Sbjct: 45838 cggcacctgctgaacctggt 45857
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 54.0 bits (27), Expect = 0.002 Identities = 63/75 (84%) Strand = Plus / Minus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctac 445 |||||||||||| | || || ||| ||||||| ||||| | ||||||||| ||||||||| Sbjct: 156633 gcgttctgggcgccgttcctactgctgcacctgggcggcccggacaccatgaccgcctac 156574 Query: 446 gccatggaggacaac 460 || | ||||||||| Sbjct: 156573 gctctcgaggacaac 156559
>ref|NM_001058654.1| Oryza sativa (japonica cultivar-group) Os04g0154800 (Os04g0154800) mRNA, complete cds Length = 2259 Score = 52.0 bits (26), Expect = 0.009 Identities = 53/62 (85%) Strand = Plus / Plus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || |||||| | ||||||||||| | ||||| |||||| |||| Sbjct: 312 tggcgttctgggcgccgttcctgctgctccacctcggcggcccggacaacatcactgcct 371 Query: 444 ac 445 || Sbjct: 372 ac 373
>emb|AL606605.4|OSJN00049 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089E12, complete sequence Length = 154111 Score = 52.0 bits (26), Expect = 0.009 Identities = 53/62 (85%) Strand = Plus / Plus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || |||||| | ||||||||||| | ||||| |||||| |||| Sbjct: 86672 tggcgttctgggcgccgttcctgctgctccacctcggcggcccggacaacatcactgcct 86731 Query: 444 ac 445 || Sbjct: 86732 ac 86733
>dbj|AK111451.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B11, full insert sequence Length = 2256 Score = 52.0 bits (26), Expect = 0.009 Identities = 53/62 (85%) Strand = Plus / Plus Query: 384 tggcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcct 443 |||||||||||||| | || |||||| | ||||||||||| | ||||| |||||| |||| Sbjct: 312 tggcgttctgggcgccgttcctgctgctccacctcggcggcccggacaacatcactgcct 371 Query: 444 ac 445 || Sbjct: 372 ac 373
>emb|CR855056.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0146N20, complete sequence Length = 82616 Score = 50.1 bits (25), Expect = 0.036 Identities = 40/45 (88%) Strand = Plus / Minus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||||| ||||||| ||||||||||||| || | ||||||||| Sbjct: 81258 ctcggcggtcaggacaacatcaccgcctactccttcgaggacaac 81214 Score = 44.1 bits (22), Expect = 2.2 Identities = 61/74 (82%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 ||||||||||||||||| ||| |||| || || ||||||||| || || ||||||| Sbjct: 79775 gggtgtgggtggagatgctgtcttacgttgcttgcaactgcagcagagagtctcatgcca 79716 Query: 1983 ggcagctcagcagc 1996 ||||||| |||||| Sbjct: 79715 ggcagcttagcagc 79702
>dbj|AK241306.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065140N17, full insert sequence Length = 2229 Score = 50.1 bits (25), Expect = 0.036 Identities = 58/69 (84%) Strand = Plus / Plus Query: 389 ttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctacgcc 448 ||||||||| |||| ||||| | || |||||||| ||||| |||||||| |||| | || Sbjct: 427 ttctgggcgcccttcatgctgctccatctcggcgggcaggagaccatcacggccttctcc 486 Query: 449 atggaggac 457 ||||||||| Sbjct: 487 atggaggac 495
>ref|NM_001074871.1| Oryza sativa (japonica cultivar-group) Os11g0638700 (Os11g0638700) mRNA, complete cds Length = 3072 Score = 50.1 bits (25), Expect = 0.036 Identities = 49/57 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||| ||||||| || || ||||||| ||||| ||||||||||| ||||||||| Sbjct: 304 ctgctgctgcaccttggtgggcaggacaaaatcactgcctacgccatcgaggacaac 360
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01, complete sequence Length = 149215 Score = 50.1 bits (25), Expect = 0.036 Identities = 58/69 (84%) Strand = Plus / Minus Query: 389 ttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctacgcc 448 ||||||||| |||| ||||| | || |||||||| ||||| |||||||| |||| | || Sbjct: 59959 ttctgggcgcccttcatgctgctccatctcggcgggcaggagaccatcacggccttctcc 59900 Query: 449 atggaggac 457 ||||||||| Sbjct: 59899 atggaggac 59891
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 50.1 bits (25), Expect = 0.036 Identities = 49/57 (85%) Strand = Plus / Plus Query: 404 ctgctggtgcacctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||| ||||||| || || ||||||| ||||| ||||||||||| ||||||||| Sbjct: 25371 ctgctgctgcaccttggtgggcaggacaaaatcactgcctacgccatcgaggacaac 25427
>emb|AL606667.5|OSJN00082 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C06, complete sequence Length = 160129 Score = 50.1 bits (25), Expect = 0.036 Identities = 40/45 (88%) Strand = Plus / Minus Query: 416 ctcggcggacaggacaccatcaccgcctacgccatggaggacaac 460 |||||||| ||||||| ||||||||||||| || | ||||||||| Sbjct: 46677 ctcggcggtcaggacaacatcaccgcctactccttcgaggacaac 46633 Score = 44.1 bits (22), Expect = 2.2 Identities = 61/74 (82%) Strand = Plus / Minus Query: 1923 gggtgtgggtggagatgttgtgctacgccgccagccactgcagcaatgactcacatgcca 1982 ||||||||||||||||| ||| |||| || || ||||||||| || || ||||||| Sbjct: 45193 gggtgtgggtggagatgctgtcttacgttgcttgcaactgcagcagagagtctcatgcca 45134 Query: 1983 ggcagctcagcagc 1996 ||||||| |||||| Sbjct: 45133 ggcagcttagcagc 45120
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 48.1 bits (24), Expect = 0.14 Identities = 30/32 (93%) Strand = Plus / Minus Query: 427 ggacaccatcaccgcctacgccatggaggaca 458 ||||| |||||||||||||||| ||||||||| Sbjct: 97989 ggacaacatcaccgcctacgccctggaggaca 97958 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 34681 ggacaacatcaccgcctactccttggaggacaa 34713
>emb|CR855033.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147M20, complete sequence Length = 87541 Score = 46.1 bits (23), Expect = 0.57 Identities = 41/47 (87%) Strand = Plus / Minus Query: 428 gacaccatcaccgcctacgccatggaggacaacgatctctggctgcg 474 |||| |||||||||||| ||| || ||||||| || ||||||||||| Sbjct: 16579 gacaacatcaccgcctatgccctgcaggacaatgagctctggctgcg 16533
>emb|CR855037.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0820C10, complete sequence Length = 114139 Score = 46.1 bits (23), Expect = 0.57 Identities = 41/47 (87%) Strand = Plus / Minus Query: 428 gacaccatcaccgcctacgccatggaggacaacgatctctggctgcg 474 |||| |||||||||||| ||| || ||||||| || ||||||||||| Sbjct: 100789 gacaacatcaccgcctatgccctgcaggacaatgagctctggctgcg 100743
>emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chromosome Xp11.21-11.23 Contains a novel gene and a CpG island, complete sequence Length = 154847 Score = 46.1 bits (23), Expect = 0.57 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2042 tactacaattggtgtcaccacaa 2064 ||||||||||||||||||||||| Sbjct: 95128 tactacaattggtgtcaccacaa 95150
>emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence Length = 127117 Score = 46.1 bits (23), Expect = 0.57 Identities = 50/59 (84%) Strand = Plus / Plus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgccta 444 |||||||||||| |||| | ||| ||||||||||||| | |||| |||||||||||| Sbjct: 73375 gcgttctgggcgcccttcttcctgctgcacctcggcggccccgacagcatcaccgccta 73433 Score = 42.1 bits (21), Expect = 8.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctac 445 |||||||||||| |||| | ||| | ||||||||||| | |||| ||||||||||||| Sbjct: 80712 gcgttctgggcgcccttcttcctgctccacctcggcgggcccgacagcatcaccgcctac 80653 Query: 446 g 446 | Sbjct: 80652 g 80652
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgct 1946 |||||||||||||||||||||| Sbjct: 100402 gtgtgggtggagatgttgtgct 100381
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgct 1946 |||||||||||||||||||||| Sbjct: 56703 gtgtgggtggagatgttgtgct 56682
>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence Length = 157809 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1433 tatgtaaaaaagaaccacaacc 1454 |||||||||||||||||||||| Sbjct: 133523 tatgtaaaaaagaaccacaacc 133502
>gb|AC126043.3| Mus musculus BAC clone RP24-356N5 from chromosome 13, complete sequence Length = 140207 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1981 caggcagctcagcagcagcact 2002 |||||||||||||||||||||| Sbjct: 45440 caggcagctcagcagcagcact 45461
>gb|AC091650.4| Homo sapiens BAC clone RP13-496E15 from 7, complete sequence Length = 45819 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaacc 1454 |||||||||||||||||||||| Sbjct: 43507 tatgtaaaaaagaaccacaacc 43528
>gb|AC145768.1| Pan troglodytes BAC clone RP43-5G4 from 7, complete sequence Length = 154325 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaacc 1454 |||||||||||||||||||||| Sbjct: 128440 tatgtaaaaaagaaccacaacc 128461
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgct 1946 |||||||||||||||||||||| Sbjct: 26818463 gtgtgggtggagatgttgtgct 26818442
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 2.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacga 462 ||||||||||| |||||||| || ||||| ||| ||| ||||||||||| Sbjct: 8106083 cacctcggcgggcaggacacaataaccgcgtacaacatcgaggacaacga 8106132 Score = 44.1 bits (22), Expect = 2.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacga 462 ||||||||||| ||||||| ||| ||||| ||| ||| ||||||||||| Sbjct: 8269027 cacctcggcggccaggacagcataaccgcgtacaacatcgaggacaacga 8268978
>emb|AL445199.37| Human DNA sequence from clone RP13-439H18 on chromosome 10 Contains the GPR123 gene for G protein-coupled receptor 123, a novel gene (containing KIAA1768, FLJ00378 and FLJ00252), gene FLJ25027, the UTF1 gene for undifferentiated embryonic cell transcription factor 1, the 5' end of the VENTX2 gene for VENT-like homeobox2, a novel gene, a 60S ribosomal protein L5 (RPL5) pseudogene and twenty five CpG islands, complete sequence Length = 212199 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 tggtgcaggccgccggggcggc 513 |||||||||||||||||||||| Sbjct: 72588 tggtgcaggccgccggggcggc 72567
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 44.1 bits (22), Expect = 2.2 Identities = 37/42 (88%) Strand = Plus / Minus Query: 419 ggcggacaggacaccatcaccgcctacgccatggaggacaac 460 ||||| ||||||||||| || || | |||||||||||||||| Sbjct: 17827 ggcgggcaggacaccattactgctttcgccatggaggacaac 17786
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 44.1 bits (22), Expect = 2.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacga 462 ||||||||||| |||||||| || ||||| ||| ||| ||||||||||| Sbjct: 94276 cacctcggcgggcaggacacaataaccgcgtacaacatcgaggacaacga 94325
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 44.1 bits (22), Expect = 2.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacga 462 ||||||||||| ||||||| ||| ||||| ||| ||| ||||||||||| Sbjct: 101173 cacctcggcggccaggacagcataaccgcgtacaacatcgaggacaacga 101124
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 44.1 bits (22), Expect = 2.2 Identities = 43/50 (86%) Strand = Plus / Minus Query: 413 cacctcggcggacaggacaccatcaccgcctacgccatggaggacaacga 462 ||||||||||| ||||||| ||| ||||| ||| ||| ||||||||||| Sbjct: 45698 cacctcggcggccaggacagcataaccgcgtacaacatcgaggacaacga 45649
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1980 ccaggcagctcagcagcagcac 2001 |||||||||||||||||||||| Sbjct: 3606818 ccaggcagctcagcagcagcac 3606797 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 aaccagtgccgacgctgatgg 122 ||||||||||||||||||||| Sbjct: 2766079 aaccagtgccgacgctgatgg 2766099
>gb|AF111709.1|AF111709 Oryza sativa subsp. indica Retrosat 1 retrotransposon and Ty3-Gypsy type Retrosat 2 retrotransposon, complete sequences; and unknown genes Length = 52684 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1925 gtgtgggtggagatgttgtgct 1946 |||||||||||||||||||||| Sbjct: 13297 gtgtgggtggagatgttgtgct 13276
>emb|AL096810.1|CNS00YVD Homo sapiens genomic region containing hypervariable minisatellites chromosome 10[10q26.3] of Homo sapiens Length = 37470 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 tggtgcaggccgccggggcggc 513 |||||||||||||||||||||| Sbjct: 3093 tggtgcaggccgccggggcggc 3072
>gb|CP000382.1| Clostridium novyi NT, complete genome Length = 2547720 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 actgctgcaagtgctcctgct 222 ||||||||||||||||||||| Sbjct: 992463 actgctgcaagtgctcctgct 992443
>emb|AM114193.2| Uncultured methanogenic archaeon RC-I complete genome Length = 3179916 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 503 gccggggcggcctacgtgctg 523 ||||||||||||||||||||| Sbjct: 2568104 gccggggcggcctacgtgctg 2568124
>ref|NM_001058648.1| Oryza sativa (japonica cultivar-group) Os04g0150300 (Os04g0150300) mRNA, partial cds Length = 2381 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 935 ggacaacatcaccgcctactccttggaggacaa 967
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 ggatatacgccctcaagtcct 623 ||||||||||||||||||||| Sbjct: 13587607 ggatatacgccctcaagtcct 13587587
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaac 1453 ||||||||||||||||||||| Sbjct: 565133 tatgtaaaaaagaaccacaac 565153
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaac 1453 ||||||||||||||||||||| Sbjct: 547956 tatgtaaaaaagaaccacaac 547976
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaac 1453 ||||||||||||||||||||| Sbjct: 546679 tatgtaaaaaagaaccacaac 546699
>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence Length = 102515 Score = 42.1 bits (21), Expect = 8.8 Identities = 51/61 (83%) Strand = Plus / Minus Query: 386 gcgttctgggcgtccttactgctggtgcacctcggcggacaggacaccatcaccgcctac 445 |||||||||||| |||| | ||| | ||||||||||| | |||| ||||||||||||| Sbjct: 7083 gcgttctgggcgcccttcttcctgctccacctcggcgggcccgacagcatcaccgcctac 7024 Query: 446 g 446 | Sbjct: 7023 g 7023
>gb|AC068500.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-175C13, complete sequence Length = 201878 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1711 gttccttcttgtggagcggcc 1731 ||||||||||||||||||||| Sbjct: 59042 gttccttcttgtggagcggcc 59022
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1433 tatgtaaaaaagaaccacaac 1453 ||||||||||||||||||||| Sbjct: 1012758 tatgtaaaaaagaaccacaac 1012738
>gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosome 12, complete sequence Length = 157411 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 915 acaccaaggccctggtgattg 935 ||||||||||||||||||||| Sbjct: 45092 acaccaaggccctggtgattg 45072
>gb|AC169370.4| Sorghum bicolor clone SB_BBc0011I20, complete sequence Length = 135209 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 agcagcagcagctcatggcgt 389 ||||||||||||||||||||| Sbjct: 51467 agcagcagcagctcatggcgt 51487
>gb|AC121340.4| Homo sapiens X BAC RP13-928P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125285 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1217 aaggaagcagagggatgcaggaagt 1241 ||||||||||||||||||| ||||| Sbjct: 3630 aaggaagcagagggatgcaagaagt 3654
>gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165518 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 ggatatacgccctcaagtcct 623 ||||||||||||||||||||| Sbjct: 81598 ggatatacgccctcaagtcct 81578
>tpg|BK002125.1| TPA_inf: Drosophila melanogaster HDC10030 (HDC10030) gene, complete cds Length = 3543 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 ggatatacgccctcaagtcct 623 ||||||||||||||||||||| Sbjct: 3061 ggatatacgccctcaagtcct 3041
>gb|AE010006.1| Streptococcus pyogenes strain MGAS8232, section 54 of 173 of the complete genome Length = 3631 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1433 tatgtaaaaaagaaccacaac 1453 ||||||||||||||||||||| Sbjct: 2299 tatgtaaaaaagaaccacaac 2319
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 aagcttactgctgcaagtgct 216 ||||||||||||||||||||| Sbjct: 2834181 aagcttactgctgcaagtgct 2834161
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gcaagccacgcgagcagcagc 377 ||||||||||||||||||||| Sbjct: 379785 gcaagccacgcgagcagcagc 379805
>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 9/10 Length = 349115 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 aagcttactgctgcaagtgct 216 ||||||||||||||||||||| Sbjct: 13903 aagcttactgctgcaagtgct 13883
>emb|AL662941.3|OSJN00147 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074B10, complete sequence Length = 165400 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 catcaccgcctacgccatggaggacaacg 461 ||||||||||||| || |||||||||||| Sbjct: 32399 catcaccgcctactccctggaggacaacg 32371
>gb|AC140846.3| Homo sapiens X PAC RP1-93D11 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 152761 Score = 42.1 bits (21), Expect = 8.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1217 aaggaagcagagggatgcaggaagt 1241 ||||||||||||||||||| ||||| Sbjct: 43746 aaggaagcagagggatgcaagaagt 43770
>dbj|AK103818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147F20, full insert sequence Length = 2382 Score = 42.1 bits (21), Expect = 8.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 427 ggacaccatcaccgcctacgccatggaggacaa 459 ||||| ||||||||||||| || |||||||||| Sbjct: 936 ggacaacatcaccgcctactccttggaggacaa 968
>gb|AF171669.1|AF171669 Homo sapiens glycoprotein-associated amino acid transporter LAT2 (LAT2) mRNA, complete cds Length = 3728 Score = 42.1 bits (21), Expect = 8.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 718 cccggaggaggtcctgcaggg 738 ||||||||||||||||||||| Sbjct: 2124 cccggaggaggtcctgcaggg 2104
>ref|NM_001014082.1| Rattus norvegicus nicalin homolog (zebrafish) (Ncln), mRNA gb|BC083785.1| Rattus norvegicus nicalin homolog (zebrafish), mRNA (cDNA clone MGC:94760 IMAGE:7096595), complete cds Length = 2923 Score = 42.1 bits (21), Expect = 8.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1027 tggtggcagaggttacagcaggcgggaca 1055 ||||||||||||| ||| ||||||||||| Sbjct: 2149 tggtggcagaggtgacaacaggcgggaca 2121 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 351,415,459 Number of extensions: 18536418 Number of successful extensions: 94744 Number of sequences better than 10.0: 94 Number of HSP's gapped: 94741 Number of HSP's successfully gapped: 137 Length of query: 2310 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2287 Effective length of database: 18,503,978,556 Effective search space: 42318598957572 Effective search space used: 42318598957572 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
