Clone Name | FLbaf95i07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK242060.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075126L22, full insert sequence Length = 1952 Score = 553 bits (279), Expect = e-154 Identities = 532/615 (86%), Gaps = 6/615 (0%) Strand = Plus / Plus Query: 142 cggcggccgcgtcaaaatcttcgatcg-gatctgaagtgccgacaccgggaccgggcggc 200 ||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| Sbjct: 188 cggcggccgcgtcaagatcttcgaccgcgacctgaagcggcggcaccgggaccgggcggc 247 Query: 201 gtgggcgatgcgggaaactgatccactggtagacgcagtcgccgataacctcctcgaccg 260 |||||| || |||| || || | || | ||||| |||||||| |||||||||||||| Sbjct: 248 gtgggccattggggagaccgacgcgctcgccgacgccgtcgccgacaacctcctcgaccg 307 Query: 261 cctcgaggactgcaggaaggcgttcccctcggcattctgcctcggcggttcggccggcgc 320 |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||| Sbjct: 308 cctcgaggactgcaggaaggcgttcccctccgcgctctgcctcggcggctccgccggcgc 367 Query: 321 cgtccgccggtcgcttcgtggccgcggtggaatcgagaaattgaccatgatggacatgtc 380 ||||||||| ||||| || |||||||||||||| ||||| ||| ||||||||||||||| Sbjct: 368 cgtccgccgctcgctccgcggccgcggtggaattgagaagctgatcatgatggacatgtc 427 Query: 381 ggtagatatggtgaacaagtggcgggagttggagagtgctaccgacgacggccccgagat 440 || || ||||||| |||||||| ||| |||| | ||||||||| |||| || ||||| Sbjct: 428 ggccgacatggtgagaaagtggcgagagatggataatgctaccgatgacgtcctcgagac 487 Query: 441 gcactttatcgttggagatgaagagtatcttcctatcaaagagaactcccaggatttgat 500 ||| ||| |||| ||||||||||| || ||||| |||||||| | ||| |||||| ||| Sbjct: 488 gcagtttgtcgtcggagatgaagaataccttccaatcaaagaaagctcgcaggatacgat 547 Query: 501 aatgagctgtcttgggcttcattggataaatgatctacctggagccatgatacagtgtag 560 ||| || ||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct: 548 aataagttgtcttgggcttcattggacaaatgatctacctggagcaatgatac-----ag 602 Query: 561 gttggcgttgaagcctgatggcctttttcttgcagcaattcttggcggggagactctgaa 620 |||| ||||||||||||||||||||||||||||||||||||| || || |||||||| || Sbjct: 603 gttgtcgttgaagcctgatggcctttttcttgcagcaattctcggtggagagactcttaa 662 Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||||||||| || || || |||||||||||||| |||||||| ||||||||||| || Sbjct: 663 ggaactaagaatagcttgtacaattgctcaaatggagcgtgagggtggcatcagtccccg 722 Query: 681 aatgtcgccactagcacaagtccgtgatgcaggaaaccttttgtcaagggcaggcttcgc 740 |||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| | Sbjct: 723 aatgtcacctttagcacaagtccgtgatgcaggaaaccttttgacaagagcaggcttcac 782 Query: 741 ccttccaggagttga 755 ||||||||||||||| Sbjct: 783 ccttccaggagttga 797 Score = 170 bits (86), Expect = 9e-39 Identities = 137/154 (88%) Strand = Plus / Plus Query: 791 tggaacttgtggaacatcttagggcaatggcagaaacaaatgctctctttcaaagaagcc 850 |||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| | Sbjct: 1132 tggaacttgttgaacatcttagagcgatgggggaaacaaatgctctctttcaaagaaatc 1191 Query: 851 ctatattaaagagagatacagcactagctactgcagccatttaccagtcaatgtttgggt 910 |||||||||||| ||||||||| | || ||||| |||||||||||||||||||||||| Sbjct: 1192 ctatattaaagaaagatacagctttggcaactgcggccatttaccagtcaatgtttgggc 1251 Query: 911 tagaagatggaaccataccagcaacctttcaggt 944 ||||||||||||| | ||||||||||||||||| Sbjct: 1252 tagaagatggaactgttccagcaacctttcaggt 1285 Score = 115 bits (58), Expect = 5e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 940 caggtaatttacatgactgggtggaaggagcattcatcacaacaaaagcctaagagaagg 999 ||||| ||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct: 1416 caggttatttatatgactggctggaaggagcatccatcacagcaaaaagctaagagaagg 1475 Query: 1000 ggttctgccactgtatcatttggtgacataaggaaacaatttggttccaa 1049 |||||||| |||||||||||| ||||| || ||||||||||||||||| Sbjct: 1476 ggttctgctactgtatcatttagtgacttacaaaaacaatttggttccaa 1525
>ref|NM_001072907.1| Oryza sativa (japonica cultivar-group) Os12g0203100 (Os12g0203100) mRNA, complete cds Length = 912 Score = 430 bits (217), Expect = e-117 Identities = 376/429 (87%) Strand = Plus / Plus Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||||||||| || || || |||||||||||||| |||||||| ||||||||||| || Sbjct: 474 ggaactaagaatagcttgtacaattgctcaaatggagcgtgagggtggcatcagtccccg 533 Query: 681 aatgtcgccactagcacaagtccgtgatgcaggaaaccttttgtcaagggcaggcttcgc 740 |||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| | Sbjct: 534 aatgtcacctttagcacaagtccgtgatgcaggaaaccttttgacaagagcaggcttcac 593 Query: 741 ccttccaggagttgatgtagatcgatatacagtcaagtacaacagtgctctggaacttgt 800 ||||||||||||||| || || || || || || || ||||| |||||| |||||||||| Sbjct: 594 ccttccaggagttgacgttgaccgttacactgtgaaatacaatagtgctttggaacttgt 653 Query: 801 ggaacatcttagggcaatggcagaaacaaatgctctctttcaaagaagccctatattaaa 860 ||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 654 tgaacatcttagagcgatgggggaaacaaatgctctctttcaaagaaatcctatattaaa 713 Query: 861 gagagatacagcactagctactgcagccatttaccagtcaatgtttgggttagaagatgg 920 || ||||||||| | || ||||| |||||||||||||||||||||||| |||||||||| Sbjct: 714 gaaagatacagctttggcaactgcggccatttaccagtcaatgtttgggctagaagatgg 773 Query: 921 aaccataccagcaacctttcaggtaatttacatgactgggtggaaggagcattcatcaca 980 ||| | ||||||||||||||||| ||||| |||||||| |||||||||||| ||||||| Sbjct: 774 aactgttccagcaacctttcaggttatttatatgactggctggaaggagcatccatcaca 833 Query: 981 acaaaagcctaagagaaggggttctgccactgtatcatttggtgacataaggaaacaatt 1040 ||||| ||||||||||||||||||| |||||||||||| ||||| || |||||||| Sbjct: 834 gcaaaaagctaagagaaggggttctgctactgtatcatttagtgacttacaaaaacaatt 893 Query: 1041 tggttccaa 1049 ||||||||| Sbjct: 894 tggttccaa 902 Score = 274 bits (138), Expect = 9e-70 Identities = 292/342 (85%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 142 cggcggccgcgtcaaaatcttcgatcg-gatctgaagtgccgacaccgggaccgggcggc 200 ||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| Sbjct: 129 cggcggccgcgtcaagatcttcgaccgcgacctgaagcggcggcaccgggaccgggcggc 188 Query: 201 gtgggcgatgcgggaaactgatccactggtagacgcagtcgccgataacctcctcgaccg 260 |||||| ||| |||| || || | || | ||||| |||||||| |||||||||||||| Sbjct: 189 gtgggccatgggggagaccgacgcgctcgccgacgccgtcgccgacaacctcctcgaccg 248 Query: 261 cctcgaggactgcaggaaggcgttcccctcggcattctgcctcggcggttcggccggcgc 320 |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||| Sbjct: 249 cctcgaggactgcaggaaggcgttcccctccgcgctctgcctcggcggctccgccggcgc 308 Query: 321 cgtccgccggtcgcttcgtggccgcggtggaatcgagaaattgaccatgatggacatgtc 380 ||||||||| ||||| || |||||||||||||| ||||| ||| ||||||||||||||| Sbjct: 309 cgtccgccgctcgctccgcggccgcggtggaattgagaagctgatcatgatggacatgtc 368 Query: 381 ggtagatatggtgaacaagtggcgggagttggagagtgctaccgacgacggccccgagat 440 || || ||||||| |||||||| ||| |||| | ||||||||| |||| || ||||| Sbjct: 369 ggccgacatggtgagaaagtggcgagagatggataatgctaccgatgacgtcctcgagac 428 Query: 441 gcactttatcgttggagatgaagagtatcttcctatcaaaga 482 ||| ||| |||| ||||||||||| || ||||| |||||||| Sbjct: 429 gcagtttgtcgtcggagatgaagaataccttccaatcaaaga 470
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 192 bits (97), Expect = 3e-45 Identities = 182/209 (87%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 142 cggcggccgcgtcaaaatcttcgatcg-gatctgaagtgccgacaccgggaccgggcggc 200 ||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| Sbjct: 5393735 cggcggccgcgtcaagatcttcgaccgcgacctgaagcggcggcaccgggaccgggcggc 5393676 Query: 201 gtgggcgatgcgggaaactgatccactggtagacgcagtcgccgataacctcctcgaccg 260 |||||| ||| |||| || || | || | ||||| |||||||| |||||||||||||| Sbjct: 5393675 gtgggccatgggggagaccgacgcgctcgccgacgccgtcgccgacaacctcctcgaccg 5393616 Query: 261 cctcgaggactgcaggaaggcgttcccctcggcattctgcctcggcggttcggccggcgc 320 |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||| Sbjct: 5393615 cctcgaggactgcaggaaggcgttcccctccgcgctctgcctcggcggctccgccggcgc 5393556 Query: 321 cgtccgccggtcgcttcgtggccgcggtg 349 ||||||||| ||||| || |||||||||| Sbjct: 5393555 cgtccgccgctcgctccgcggccgcggtg 5393527 Score = 115 bits (58), Expect = 5e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 940 caggtaatttacatgactgggtggaaggagcattcatcacaacaaaagcctaagagaagg 999 ||||| ||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct: 5391526 caggttatttatatgactggctggaaggagcatccatcacagcaaaaagctaagagaagg 5391467 Query: 1000 ggttctgccactgtatcatttggtgacataaggaaacaatttggttccaa 1049 |||||||| |||||||||||| ||||| || ||||||||||||||||| Sbjct: 5391466 ggttctgctactgtatcatttagtgacttacaaaaacaatttggttccaa 5391417 Score = 103 bits (52), Expect = 2e-18 Identities = 82/92 (89%) Strand = Plus / Minus Query: 853 atattaaagagagatacagcactagctactgcagccatttaccagtcaatgtttgggtta 912 |||||||||| ||||||||| | || ||||| |||||||||||||||||||||||| || Sbjct: 5391748 atattaaagaaagatacagctttggcaactgcggccatttaccagtcaatgtttgggcta 5391689 Query: 913 gaagatggaaccataccagcaacctttcaggt 944 ||||||||||| | ||||||||||||||||| Sbjct: 5391688 gaagatggaactgttccagcaacctttcaggt 5391657 Score = 97.6 bits (49), Expect = 1e-16 Identities = 61/65 (93%) Strand = Plus / Minus Query: 553 cagtgtaggttggcgttgaagcctgatggcctttttcttgcagcaattcttggcggggag 612 |||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||| Sbjct: 5392756 cagtgtaggttgtcgttgaagcctgatggcctttttcttgcagcaattctcggtggagag 5392697 Query: 613 actct 617 ||||| Sbjct: 5392696 actct 5392692 Score = 89.7 bits (45), Expect = 3e-14 Identities = 114/137 (83%) Strand = Plus / Minus Query: 346 ggtggaatcgagaaattgaccatgatggacatgtcggtagatatggtgaacaagtggcgg 405 |||||||| ||||| ||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 5393371 ggtggaattgagaagctgatcatgatggacatgtcggccgacatggtgagaaagtggcga 5393312 Query: 406 gagttggagagtgctaccgacgacggccccgagatgcactttatcgttggagatgaagag 465 ||| |||| | ||||||||| |||| || ||||| ||| ||| |||| ||||||||||| Sbjct: 5393311 gagatggataatgctaccgatgacgtcctcgagacgcagtttgtcgtcggagatgaagaa 5393252 Query: 466 tatcttcctatcaaaga 482 || ||||| |||||||| Sbjct: 5393251 taccttccaatcaaaga 5393235 Score = 87.7 bits (44), Expect = 1e-13 Identities = 53/56 (94%) Strand = Plus / Minus Query: 700 gtccgtgatgcaggaaaccttttgtcaagggcaggcttcgcccttccaggagttga 755 |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 5392288 gtccgtgatgcaggaaaccttttgacaagagcaggcttcacccttccaggagttga 5392233 Score = 83.8 bits (42), Expect = 2e-12 Identities = 54/58 (93%) Strand = Plus / Minus Query: 498 gataatgagctgtcttgggcttcattggataaatgatctacctggagccatgatacag 555 |||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct: 5392900 gataataagttgtcttgggcttcattggacaaatgatctacctggagcaatgatacag 5392843 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||||||||| || || || |||||||||||||| |||||||| ||||||||||| || Sbjct: 5392589 ggaactaagaatagcttgtacaattgctcaaatggagcgtgagggtggcatcagtccccg 5392530 Query: 681 aatgtcgccactagcacaagt 701 |||||| || |||||||||| Sbjct: 5392529 aatgtcacctttagcacaagt 5392509 Score = 73.8 bits (37), Expect = 2e-09 Identities = 52/57 (91%) Strand = Plus / Minus Query: 791 tggaacttgtggaacatcttagggcaatggcagaaacaaatgctctctttcaaagaa 847 |||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| Sbjct: 5391898 tggaacttgttgaacatcttagagcgatgggggaaacaaatgctctctttcaaagaa 5391842 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 ccaccgccgccgccacctcgt 96 ||||||||||||||||||||| Sbjct: 8049188 ccaccgccgccgccacctcgt 8049168
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 192 bits (97), Expect = 3e-45 Identities = 182/209 (87%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 142 cggcggccgcgtcaaaatcttcgatcg-gatctgaagtgccgacaccgggaccgggcggc 200 ||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| Sbjct: 65803 cggcggccgcgtcaagatcttcgaccgcgacctgaagcggcggcaccgggaccgggcggc 65744 Query: 201 gtgggcgatgcgggaaactgatccactggtagacgcagtcgccgataacctcctcgaccg 260 |||||| ||| |||| || || | || | ||||| |||||||| |||||||||||||| Sbjct: 65743 gtgggccatgggggagaccgacgcgctcgccgacgccgtcgccgacaacctcctcgaccg 65684 Query: 261 cctcgaggactgcaggaaggcgttcccctcggcattctgcctcggcggttcggccggcgc 320 |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||| Sbjct: 65683 cctcgaggactgcaggaaggcgttcccctccgcgctctgcctcggcggctccgccggcgc 65624 Query: 321 cgtccgccggtcgcttcgtggccgcggtg 349 ||||||||| ||||| || |||||||||| Sbjct: 65623 cgtccgccgctcgctccgcggccgcggtg 65595 Score = 115 bits (58), Expect = 5e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 940 caggtaatttacatgactgggtggaaggagcattcatcacaacaaaagcctaagagaagg 999 ||||| ||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct: 63594 caggttatttatatgactggctggaaggagcatccatcacagcaaaaagctaagagaagg 63535 Query: 1000 ggttctgccactgtatcatttggtgacataaggaaacaatttggttccaa 1049 |||||||| |||||||||||| ||||| || ||||||||||||||||| Sbjct: 63534 ggttctgctactgtatcatttagtgacttacaaaaacaatttggttccaa 63485 Score = 103 bits (52), Expect = 2e-18 Identities = 82/92 (89%) Strand = Plus / Minus Query: 853 atattaaagagagatacagcactagctactgcagccatttaccagtcaatgtttgggtta 912 |||||||||| ||||||||| | || ||||| |||||||||||||||||||||||| || Sbjct: 63816 atattaaagaaagatacagctttggcaactgcggccatttaccagtcaatgtttgggcta 63757 Query: 913 gaagatggaaccataccagcaacctttcaggt 944 ||||||||||| | ||||||||||||||||| Sbjct: 63756 gaagatggaactgttccagcaacctttcaggt 63725 Score = 97.6 bits (49), Expect = 1e-16 Identities = 61/65 (93%) Strand = Plus / Minus Query: 553 cagtgtaggttggcgttgaagcctgatggcctttttcttgcagcaattcttggcggggag 612 |||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||| Sbjct: 64824 cagtgtaggttgtcgttgaagcctgatggcctttttcttgcagcaattctcggtggagag 64765 Query: 613 actct 617 ||||| Sbjct: 64764 actct 64760 Score = 89.7 bits (45), Expect = 3e-14 Identities = 114/137 (83%) Strand = Plus / Minus Query: 346 ggtggaatcgagaaattgaccatgatggacatgtcggtagatatggtgaacaagtggcgg 405 |||||||| ||||| ||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 65439 ggtggaattgagaagctgatcatgatggacatgtcggccgacatggtgagaaagtggcga 65380 Query: 406 gagttggagagtgctaccgacgacggccccgagatgcactttatcgttggagatgaagag 465 ||| |||| | ||||||||| |||| || ||||| ||| ||| |||| ||||||||||| Sbjct: 65379 gagatggataatgctaccgatgacgtcctcgagacgcagtttgtcgtcggagatgaagaa 65320 Query: 466 tatcttcctatcaaaga 482 || ||||| |||||||| Sbjct: 65319 taccttccaatcaaaga 65303 Score = 87.7 bits (44), Expect = 1e-13 Identities = 53/56 (94%) Strand = Plus / Minus Query: 700 gtccgtgatgcaggaaaccttttgtcaagggcaggcttcgcccttccaggagttga 755 |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 64356 gtccgtgatgcaggaaaccttttgacaagagcaggcttcacccttccaggagttga 64301 Score = 83.8 bits (42), Expect = 2e-12 Identities = 54/58 (93%) Strand = Plus / Minus Query: 498 gataatgagctgtcttgggcttcattggataaatgatctacctggagccatgatacag 555 |||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct: 64968 gataataagttgtcttgggcttcattggacaaatgatctacctggagcaatgatacag 64911 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||||||||| || || || |||||||||||||| |||||||| ||||||||||| || Sbjct: 64657 ggaactaagaatagcttgtacaattgctcaaatggagcgtgagggtggcatcagtccccg 64598 Query: 681 aatgtcgccactagcacaagt 701 |||||| || |||||||||| Sbjct: 64597 aatgtcacctttagcacaagt 64577 Score = 73.8 bits (37), Expect = 2e-09 Identities = 52/57 (91%) Strand = Plus / Minus Query: 791 tggaacttgtggaacatcttagggcaatggcagaaacaaatgctctctttcaaagaa 847 |||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| Sbjct: 63966 tggaacttgttgaacatcttagagcgatgggggaaacaaatgctctctttcaaagaa 63910
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 192 bits (97), Expect = 3e-45 Identities = 182/209 (87%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 142 cggcggccgcgtcaaaatcttcgatcg-gatctgaagtgccgacaccgggaccgggcggc 200 ||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| Sbjct: 72073 cggcggccgcgtcaagatcttcgaccgcgacctgaagcggcggcaccgggaccgggcggc 72132 Query: 201 gtgggcgatgcgggaaactgatccactggtagacgcagtcgccgataacctcctcgaccg 260 |||||| ||| |||| || || | || | ||||| |||||||| |||||||||||||| Sbjct: 72133 gtgggccatgggggagaccgacgcgctcgccgacgccgtcgccgacaacctcctcgaccg 72192 Query: 261 cctcgaggactgcaggaaggcgttcccctcggcattctgcctcggcggttcggccggcgc 320 |||||||||||||||||||||||||||||| || ||||||||||||| || |||||||| Sbjct: 72193 cctcgaggactgcaggaaggcgttcccctccgcgctctgcctcggcggctccgccggcgc 72252 Query: 321 cgtccgccggtcgcttcgtggccgcggtg 349 ||||||||| ||||| || |||||||||| Sbjct: 72253 cgtccgccgctcgctccgcggccgcggtg 72281 Score = 115 bits (58), Expect = 5e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 940 caggtaatttacatgactgggtggaaggagcattcatcacaacaaaagcctaagagaagg 999 ||||| ||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct: 74282 caggttatttatatgactggctggaaggagcatccatcacagcaaaaagctaagagaagg 74341 Query: 1000 ggttctgccactgtatcatttggtgacataaggaaacaatttggttccaa 1049 |||||||| |||||||||||| ||||| || ||||||||||||||||| Sbjct: 74342 ggttctgctactgtatcatttagtgacttacaaaaacaatttggttccaa 74391 Score = 103 bits (52), Expect = 2e-18 Identities = 82/92 (89%) Strand = Plus / Plus Query: 853 atattaaagagagatacagcactagctactgcagccatttaccagtcaatgtttgggtta 912 |||||||||| ||||||||| | || ||||| |||||||||||||||||||||||| || Sbjct: 74060 atattaaagaaagatacagctttggcaactgcggccatttaccagtcaatgtttgggcta 74119 Query: 913 gaagatggaaccataccagcaacctttcaggt 944 ||||||||||| | ||||||||||||||||| Sbjct: 74120 gaagatggaactgttccagcaacctttcaggt 74151 Score = 97.6 bits (49), Expect = 1e-16 Identities = 61/65 (93%) Strand = Plus / Plus Query: 553 cagtgtaggttggcgttgaagcctgatggcctttttcttgcagcaattcttggcggggag 612 |||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||| Sbjct: 73052 cagtgtaggttgtcgttgaagcctgatggcctttttcttgcagcaattctcggtggagag 73111 Query: 613 actct 617 ||||| Sbjct: 73112 actct 73116 Score = 89.7 bits (45), Expect = 3e-14 Identities = 114/137 (83%) Strand = Plus / Plus Query: 346 ggtggaatcgagaaattgaccatgatggacatgtcggtagatatggtgaacaagtggcgg 405 |||||||| ||||| ||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 72437 ggtggaattgagaagctgatcatgatggacatgtcggccgacatggtgagaaagtggcga 72496 Query: 406 gagttggagagtgctaccgacgacggccccgagatgcactttatcgttggagatgaagag 465 ||| |||| | ||||||||| |||| || ||||| ||| ||| |||| ||||||||||| Sbjct: 72497 gagatggataatgctaccgatgacgtcctcgagacgcagtttgtcgtcggagatgaagaa 72556 Query: 466 tatcttcctatcaaaga 482 || ||||| |||||||| Sbjct: 72557 taccttccaatcaaaga 72573 Score = 87.7 bits (44), Expect = 1e-13 Identities = 53/56 (94%) Strand = Plus / Plus Query: 700 gtccgtgatgcaggaaaccttttgtcaagggcaggcttcgcccttccaggagttga 755 |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct: 73520 gtccgtgatgcaggaaaccttttgacaagagcaggcttcacccttccaggagttga 73575 Score = 83.8 bits (42), Expect = 2e-12 Identities = 54/58 (93%) Strand = Plus / Plus Query: 498 gataatgagctgtcttgggcttcattggataaatgatctacctggagccatgatacag 555 |||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct: 72908 gataataagttgtcttgggcttcattggacaaatgatctacctggagcaatgatacag 72965 Score = 81.8 bits (41), Expect = 7e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||||||||| || || || |||||||||||||| |||||||| ||||||||||| || Sbjct: 73219 ggaactaagaatagcttgtacaattgctcaaatggagcgtgagggtggcatcagtccccg 73278 Query: 681 aatgtcgccactagcacaagt 701 |||||| || |||||||||| Sbjct: 73279 aatgtcacctttagcacaagt 73299 Score = 73.8 bits (37), Expect = 2e-09 Identities = 52/57 (91%) Strand = Plus / Plus Query: 791 tggaacttgtggaacatcttagggcaatggcagaaacaaatgctctctttcaaagaa 847 |||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| Sbjct: 73910 tggaacttgttgaacatcttagagcgatgggggaaacaaatgctctctttcaaagaa 73966
>emb|AJ401335.1|SHY401335 Saccharum hybrid cultivar R570 microsatellite DNA, clone mSSCIR58 Length = 786 Score = 107 bits (54), Expect = 1e-19 Identities = 63/66 (95%) Strand = Plus / Minus Query: 490 caggatttgataatgagctgtcttgggcttcattggataaatgatctacctggagccatg 549 |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 370 caggatttgataataagctgtcttggacttcattggacaaatgatctacctggagccatg 311 Query: 550 atacag 555 |||||| Sbjct: 310 atacag 305 Score = 58.0 bits (29), Expect = 1e-04 Identities = 47/53 (88%) Strand = Plus / Minus Query: 553 cagtgtaggttggcgttgaagcctgatggcctttttcttgcagcaattcttgg 605 ||||||||| | |||||| | ||||||||||||||||| |||||| ||||||| Sbjct: 192 cagtgtaggctagcgttgcaacctgatggcctttttctggcagcagttcttgg 140
>dbj|AK228010.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-53-H21 Length = 1432 Score = 77.8 bits (39), Expect = 1e-10 Identities = 135/167 (80%) Strand = Plus / Plus Query: 514 gggcttcattggataaatgatctacctggagccatgatacagtgtaggttggcgttgaag 573 |||||||| |||| ||||||||| |||||| ||||||||||||| | | | || ||||| Sbjct: 562 gggcttcactggacaaatgatcttcctggatccatgatacagtgcaagctagcactgaag 621 Query: 574 cctgatggcctttttcttgcagcaattcttggcggggagactctgaaggaactaagaatt 633 || |||||| | ||| | |||||||||||||| || || || | ||||| || ||||| Sbjct: 622 ccggatggcttatttttagcagcaattcttggtggagaaaccttaaaggagctgagaata 681 Query: 634 gcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 ||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct: 682 gcatgcactttggctcacatggagcgggaaggagggattagtcctcg 728
>ref|NM_102127.3| Arabidopsis thaliana unknown protein (AT1G22800) mRNA, complete cds Length = 1471 Score = 77.8 bits (39), Expect = 1e-10 Identities = 135/167 (80%) Strand = Plus / Plus Query: 514 gggcttcattggataaatgatctacctggagccatgatacagtgtaggttggcgttgaag 573 |||||||| |||| ||||||||| |||||| ||||||||||||| | | | || ||||| Sbjct: 611 gggcttcactggacaaatgatcttcctggatccatgatacagtgcaagctagcactgaag 670 Query: 574 cctgatggcctttttcttgcagcaattcttggcggggagactctgaaggaactaagaatt 633 || |||||| | ||| | |||||||||||||| || || || | ||||| || ||||| Sbjct: 671 ccggatggcttatttttagcagcaattcttggtggagaaaccttaaaggagctgagaata 730 Query: 634 gcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 ||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct: 731 gcatgcactttggctcacatggagcgggaaggagggattagtcctcg 777
>gb|BT006429.1| Arabidopsis thaliana At1g22800 gene, complete cds Length = 1068 Score = 77.8 bits (39), Expect = 1e-10 Identities = 135/167 (80%) Strand = Plus / Plus Query: 514 gggcttcattggataaatgatctacctggagccatgatacagtgtaggttggcgttgaag 573 |||||||| |||| ||||||||| |||||| ||||||||||||| | | | || ||||| Sbjct: 526 gggcttcactggacaaatgatcttcctggatccatgatacagtgcaagctagcactgaag 585 Query: 574 cctgatggcctttttcttgcagcaattcttggcggggagactctgaaggaactaagaatt 633 || |||||| | ||| | |||||||||||||| || || || | ||||| || ||||| Sbjct: 586 ccggatggcttatttttagcagcaattcttggtggagaaaccttaaaggagctgagaata 645 Query: 634 gcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 ||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct: 646 gcatgcactttggctcacatggagcgggaaggagggattagtcctcg 692
>emb|BX813466.1|CNS0ACAD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1293 Score = 77.8 bits (39), Expect = 1e-10 Identities = 135/167 (80%) Strand = Plus / Plus Query: 514 gggcttcattggataaatgatctacctggagccatgatacagtgtaggttggcgttgaag 573 |||||||| |||| ||||||||| |||||| ||||||||||||| | | | || ||||| Sbjct: 554 gggcttcactggacaaatgatcttcctggatccatgatacagtgcaagctagcactgaag 613 Query: 574 cctgatggcctttttcttgcagcaattcttggcggggagactctgaaggaactaagaatt 633 || |||||| | ||| | |||||||||||||| || || || | ||||| || ||||| Sbjct: 614 ccggatggcttatttttagcagcaattcttggtggagaaaccttaaaggagctgagaata 673 Query: 634 gcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 ||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct: 674 gcatgcactttggctcacatggagcgggaaggagggattagtcctcg 720
>emb|BX814771.1|CNS0AC7Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZD10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 77.8 bits (39), Expect = 1e-10 Identities = 135/167 (80%) Strand = Plus / Plus Query: 514 gggcttcattggataaatgatctacctggagccatgatacagtgtaggttggcgttgaag 573 |||||||| |||| ||||||||| |||||| ||||||||||||| | | | || ||||| Sbjct: 611 gggcttcactggacaaatgatcttcctggatccatgatacagtgcaagctagcactgaag 670 Query: 574 cctgatggcctttttcttgcagcaattcttggcggggagactctgaaggaactaagaatt 633 || |||||| | ||| | |||||||||||||| || || || | ||||| || ||||| Sbjct: 671 ccggatggcttatttttagcagcaattcttggtggagaaaccttaaaggagctgagaata 730 Query: 634 gcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 ||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct: 731 gcatgcactttggctcacatggagcgggaaggagggattagtcctcg 777
>gb|AY109655.1| Zea mays CL41045_1 mRNA sequence Length = 656 Score = 75.8 bits (38), Expect = 4e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 706 gatgcaggaaaccttttgtcaagggcaggcttcgcccttccaggagttgatgtagatc 763 ||||||| |||||||||| |||||||||||||| ||| ||||||||||||||| |||| Sbjct: 233 gatgcagaaaaccttttgacaagggcaggcttcacccctccaggagttgatgttgatc 176 Score = 46.1 bits (23), Expect = 0.37 Identities = 32/35 (91%) Strand = Plus / Minus Query: 628 agaattgcatgcactattgctcaaatggaacgtga 662 |||||||||||||| ||| ||||||||||||||| Sbjct: 318 agaattgcatgcacagttgttcaaatggaacgtga 284
>gb|DQ493648.1| Zea mays cultivar I137TN bz locus region Length = 120751 Score = 63.9 bits (32), Expect = 2e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 704 gtgatgcaggaaaccttttgtcaagggcaggcttcgcccttccaggagttgatgtagatc 763 |||||| ||||||||||||| ||||| || ||||| |||||||||||||||||| |||| Sbjct: 85430 gtgatgtaggaaaccttttgacaaggacatgcttcaaccttccaggagttgatgttgatc 85489
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 54.0 bits (27), Expect = 0.002 Identities = 54/63 (85%) Strand = Plus / Minus Query: 621 ggaactaagaattgcatgcactattgctcaaatggaacgtgagggaggcatcagtcctcg 680 |||||| ||||| || || ||||| || |||||||||||||| ||||| |||||||| || Sbjct: 41698 ggaactcagaatagcttgtactatagcacaaatggaacgtgaaggaggaatcagtccccg 41639 Query: 681 aat 683 ||| Sbjct: 41638 aat 41636 Score = 42.1 bits (21), Expect = 5.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 718 cttttgtcaagggcaggcttcgcccttccaggagttgatgt 758 |||||| | |||||||||||| ||||||||| |||||||| Sbjct: 39352 cttttgactagggcaggcttcaaccttccaggtgttgatgt 39312
>gb|AC003979.2|T22J18 Arabidopsis thaliana chromosome 1 BAC T22J18 sequence, complete sequence Length = 84162 Score = 52.0 bits (26), Expect = 0.006 Identities = 38/42 (90%) Strand = Plus / Minus Query: 514 gggcttcattggataaatgatctacctggagccatgatacag 555 |||||||| |||| ||||||||| |||||| ||||||||||| Sbjct: 6348 gggcttcactggacaaatgatcttcctggatccatgatacag 6307
>ref|XR_009734.1| PREDICTED: Macaca mulatta transmembrane 4 superfamily member 12 (TSPAN12), mRNA Length = 1823 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1389 gtagaataaaaatgttgtcataa 1411 ||||||||||||||||||||||| Sbjct: 1410 gtagaataaaaatgttgtcataa 1432
>emb|BX813308.4| Mouse DNA sequence from clone RP23-34G12 on chromosome 2, complete sequence Length = 133963 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1027 ataaggaaacaatttggttccaa 1049 ||||||||||||||||||||||| Sbjct: 97869 ataaggaaacaatttggttccaa 97847
>dbj|AB057812.1| Cleistostoma dilatatum mitochondrial gene for 12S rRNA, tRNA-Val, 16S rRNA Length = 1236 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1383 gtttttgtagaataaaaatgttg 1405 ||||||||||||||||||||||| Sbjct: 334 gtttttgtagaataaaaatgttg 356
>emb|CT835015.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN075N24, full insert sequence Length = 552 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcg 95 |||||||||||||||||||||| Sbjct: 225 cgccaccgccgccgccacctcg 246
>ref|NM_001049861.1| Oryza sativa (japonica cultivar-group) Os01g0556700 (Os01g0556700) mRNA, complete cds Length = 1701 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcg 95 |||||||||||||||||||||| Sbjct: 1626 cgccaccgccgccgccacctcg 1647
>ref|XM_001164127.1| PREDICTED: Pan troglodytes spermatogenesis associated 6 (SPATA6), mRNA Length = 4960 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 87 gccaccgccgccgccacctcgt 108
>ref|XM_001069391.1| PREDICTED: Rattus norvegicus similar to Fanconi anemia, complementation group G (LOC684204), mRNA Length = 2063 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 974 cagtcaagtacaacagtgctct 953
>ref|XM_001076851.1| PREDICTED: Rattus norvegicus similar to Fanconi anemia, complementation group G (LOC691105), mRNA Length = 2063 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 974 cagtcaagtacaacagtgctct 953
>ref|XM_001110055.1| PREDICTED: Macaca mulatta similar to spermatogenesis associated 6, transcript variant 3 (LOC710827), mRNA Length = 1747 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 56 gccaccgccgccgccacctcgt 77
>ref|XM_001110108.1| PREDICTED: Macaca mulatta similar to spermatogenesis associated 6, transcript variant 4 (LOC710827), mRNA Length = 2601 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 14 gccaccgccgccgccacctcgt 35
>ref|XM_001109870.1| PREDICTED: Macaca mulatta similar to spermatogenesis associated 6, transcript variant 1 (LOC710827), mRNA Length = 1599 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 14 gccaccgccgccgccacctcgt 35
>ref|XM_001109920.1| PREDICTED: Macaca mulatta similar to spermatogenesis associated 6, transcript variant 2 (LOC710827), mRNA Length = 1551 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 14 gccaccgccgccgccacctcgt 35
>gb|AY260641.1| Cardamine tenera isolate GK chloroplast trnL-trnF intergenic spacer, complete sequence Length = 756 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1012 gtatcatttggtgacataagga 1033 |||||||||||||||||||||| Sbjct: 539 gtatcatttggtgacataagga 518
>gb|BC050890.1| Mus musculus Fanconi anemia, complementation group G, mRNA (cDNA clone IMAGE:6418786), complete cds Length = 2998 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 1287 cagtcaagtacaacagtgctct 1266
>gb|BC100266.1| Rattus norvegicus cDNA clone IMAGE:7383234, with apparent retained intron Length = 2417 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 532 cagtcaagtacaacagtgctct 511
>ref|NM_019073.1| Homo sapiens spermatogenesis associated 6 (SPATA6), mRNA dbj|AK000869.1| Homo sapiens cDNA FLJ10007 fis, clone HEMBA1000193 Length = 1739 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 56 gccaccgccgccgccacctcgt 77
>gb|AY049715.1| Mus musculus Fanconi anemia complementation group G (Fancg) mRNA, complete cds Length = 1876 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 830 cagtcaagtacaacagtgctct 809
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcg 95 |||||||||||||||||||||| Sbjct: 21036856 cgccaccgccgccgccacctcg 21036877
>emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on chromosome 1 Contains the 5' end of the SPATA6 gene for spermatogenesis associated 6, an amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene, a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 173373 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 75 gccaccgccgccgccacctcgt 96 |||||||||||||||||||||| Sbjct: 145809 gccaccgccgccgccacctcgt 145788
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcg 95 |||||||||||||||||||||| Sbjct: 4401 cgccaccgccgccgccacctcg 4422
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcg 95 |||||||||||||||||||||| Sbjct: 100058 cgccaccgccgccgccacctcg 100079
>ref|NM_053081.1| Mus musculus Fanconi anemia, complementation group G (Fancg), mRNA gb|AF112439.1|AF112439 Mus musculus Fanconi anemia group G protein mRNA, complete cds Length = 1923 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 839 cagtcaagtacaacagtgctct 818
>gb|AF210843.1|AF210843 Sorangium cellulosum strain So ce90 epothilone biosynthesis gene cluster, complete sequence Length = 68750 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 73 gcgccaccgccgccgccacctc 94 |||||||||||||||||||||| Sbjct: 23873 gcgccaccgccgccgccacctc 23852 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 73 gcgccaccgccgccgccacctc 94 |||||||||||||||||||||| Sbjct: 28352 gcgccaccgccgccgccacctc 28331
>gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence, complete sequence Length = 124230 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 61528 cagtcaagtacaacagtgctct 61507
>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete sequence Length = 208030 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 770 cagtcaagtacaacagtgctct 791 |||||||||||||||||||||| Sbjct: 143071 cagtcaagtacaacagtgctct 143092
>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH020D15, complete sequence Length = 143633 Score = 44.1 bits (22), Expect = 1.5 Identities = 31/34 (91%) Strand = Plus / Minus Query: 451 gttggagatgaagagtatcttcctatcaaagaga 484 ||||| |||||||||| ||| ||||||||||||| Sbjct: 119725 gttggtgatgaagagtttctccctatcaaagaga 119692
>dbj|AB002118.1| Ilyoplax ningpoensis mitochondrial DNA for 12S, 16S rRNA and tRNA-Val, partial and complete sequence Length = 1624 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1384 tttttgtagaataaaaatgttg 1405 |||||||||||||||||||||| Sbjct: 718 tttttgtagaataaaaatgttg 739
>dbj|AB002116.1| Ilyoplax formosensis mitochondrial DNA for 12S, 16S rRNA and tRNA-Val, partial and complete sequence Length = 1626 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1384 tttttgtagaataaaaatgttg 1405 |||||||||||||||||||||| Sbjct: 722 tttttgtagaataaaaatgttg 743
>gb|DQ274059.1| Gibberella moniliformis VeA protein (veA) gene, complete cds Length = 2398 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 1217 cgccaccgccgccgccacctc 1237
>ref|NM_001061341.1| Oryza sativa (japonica cultivar-group) Os05g0180000 (Os05g0180000) mRNA, complete cds Length = 1455 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctcgttc 98 ||||||||||||||||||| ||||| Sbjct: 682 cgccaccgccgccgccaccgcgttc 658
>ref|XM_001141982.1| PREDICTED: Pan troglodytes calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA Length = 3834 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 ctgcgccaccgccgccgccac 91 ||||||||||||||||||||| Sbjct: 525 ctgcgccaccgccgccgccac 505
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 gccaccgccgccgccacctcg 95 ||||||||||||||||||||| Sbjct: 6968331 gccaccgccgccgccacctcg 6968351
>gb|DQ782822.1| Anisomeridium polypori isolate AFTOL-ID 101 RNA polymerase II largest subunit-like (RPB1) gene, partial sequence Length = 3121 Score = 42.1 bits (21), Expect = 5.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 507 ctgtcttgggcttcattggataaatgatc 535 ||||||||||||||| |||| |||||||| Sbjct: 2920 ctgtcttgggcttcaatggacaaatgatc 2892
>emb|BX936284.27| Zebrafish DNA sequence from clone DKEY-22A24 in linkage group 3, complete sequence Length = 224666 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1384 tttttgtagaataaaaatgtt 1404 ||||||||||||||||||||| Sbjct: 141488 tttttgtagaataaaaatgtt 141508
>ref|XM_968124.1| PREDICTED: Tribolium castaneum similar to CG12072-PA (LOC661996), mRNA Length = 3210 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 575 cgccaccgccgccgccacctc 595
>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete sequence Length = 214959 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 17024 cgccaccgccgccgccacctc 17044
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 gccgcggccgccgcacgtcgc 61 ||||||||||||||||||||| Sbjct: 2857977 gccgcggccgccgcacgtcgc 2857957
>ref|XM_866244.1| PREDICTED: Bos taurus similar to ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1, transcript variant 2 (LOC508410), mRNA Length = 2976 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 561 cgccaccgccgccgccacctc 541
>ref|XM_877880.1| PREDICTED: Bos taurus similar to ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1, transcript variant 5 (LOC508410), mRNA Length = 2227 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 240 cgccaccgccgccgccacctc 220
>ref|XM_877801.1| PREDICTED: Bos taurus similar to ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1, transcript variant 3 (LOC508410), mRNA Length = 2720 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 553 cgccaccgccgccgccacctc 533
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 tggcttccggagccgcggccgccgc 54 ||||||||||||||| ||||||||| Sbjct: 185943 tggcttccggagccggggccgccgc 185919
>gb|AC024214.1| Caenorhabditis elegans cosmid Y77E11A, complete sequence Length = 121081 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 56339 cgccaccgccgccgccacctc 56359
>gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome 6, complete sequence Length = 209736 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 tcaccacttctcttcctcttc 123 ||||||||||||||||||||| Sbjct: 101029 tcaccacttctcttcctcttc 101049
>gb|AC161366.6| Mus musculus BAC clone RP24-230D17 from chromosome 9, complete sequence Length = 155733 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ttcccaatcaccacttctctt 116 ||||||||||||||||||||| Sbjct: 112432 ttcccaatcaccacttctctt 112452
>gb|AC112162.8| Mus Musculus chromosome 9 BAC clone MGS1-296M6 ES cell line, complete sequence Length = 116580 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ttcccaatcaccacttctctt 116 ||||||||||||||||||||| Sbjct: 86213 ttcccaatcaccacttctctt 86233
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcgttc 98 ||||||||||||||||||| ||||| Sbjct: 110357 cgccaccgccgccgccaccgcgttc 110381
>ref|NM_067681.2| Caenorhabditis elegans CaLPain family member (clp-7) (clp-7) mRNA, complete cds Length = 2550 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 158 cgccaccgccgccgccacctc 138
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcgttc 98 ||||||||||||||||||| ||||| Sbjct: 4742352 cgccaccgccgccgccaccgcgttc 4742376
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 21643710 cgccaccgccgccgccacctc 21643690
>emb|AL121931.10|HS1131C10 Human DNA sequence from clone RP5-1131C10 on chromosome 6q12-13, complete sequence Length = 133751 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 808 cttagggcaatggcagaaaca 828 ||||||||||||||||||||| Sbjct: 47492 cttagggcaatggcagaaaca 47472
>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence Length = 201260 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 710 caggaaaccttttgtcaaggg 730 ||||||||||||||||||||| Sbjct: 91440 caggaaaccttttgtcaaggg 91460
>ref|NM_008085.1| Mus musculus glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (Gapdhs), mRNA Length = 1317 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 158 cgccaccgccgccgccacctc 178
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 78252 cgccaccgccgccgccacctc 78232
>emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in linkage group 3, complete sequence Length = 177868 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1384 tttttgtagaataaaaatgtt 1404 ||||||||||||||||||||| Sbjct: 23061 tttttgtagaataaaaatgtt 23041
>emb|BX510992.5| Zebrafish DNA sequence from clone DKEYP-93H6 in linkage group 20, complete sequence Length = 211650 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1384 tttttgtagaataaaaatgtt 1404 ||||||||||||||||||||| Sbjct: 52223 tttttgtagaataaaaatgtt 52243
>emb|CR391655.1| Gallus gallus finished cDNA, clone ChEST898k24 Length = 735 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 867 tacagcactagctactgcagc 887 ||||||||||||||||||||| Sbjct: 146 tacagcactagctactgcagc 126
>emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 in linkage group 11, complete sequence Length = 173631 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1386 tttgtagaataaaaatgttgt 1406 ||||||||||||||||||||| Sbjct: 116495 tttgtagaataaaaatgttgt 116515
>gb|AC144527.3| Homo sapiens BAC clone RP13-932E12 from 2, complete sequence Length = 22046 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1394 ataaaaatgttgtcataactt 1414 ||||||||||||||||||||| Sbjct: 18115 ataaaaatgttgtcataactt 18095
>emb|BX816555.1|CNS0ABUZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH55ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1341 Score = 42.1 bits (21), Expect = 5.8 Identities = 72/89 (80%) Strand = Plus / Plus Query: 592 gcagcaattcttggcggggagactctgaaggaactaagaattgcatgcactattgctcaa 651 |||||||||||||| || || || | ||||| || ||||| ||||||||| | ||||| Sbjct: 693 gcagcaattcttggtggagaaaccttaaaggagctgagaatagcatgcactttcgctcac 752 Query: 652 atggaacgtgagggaggcatcagtcctcg 680 ||||| || || ||||| || |||||||| Sbjct: 753 atggagcgggaaggagggattagtcctcg 781
>gb|AC024873.1|AC024873 Caenorhabditis elegans clone Y77E11A, complete sequence Length = 121081 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 56339 cgccaccgccgccgccacctc 56359
>ref|NM_001016398.2| Xenopus tropicalis hypothetical protein LOC549152 (LOC549152), mRNA emb|CR761157.2| Xenopus tropicalis finished cDNA, clone TEgg061m03 Length = 1701 Score = 42.1 bits (21), Expect = 5.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 997 aggggttctgccactgtatcatttggtga 1025 ||||||||||| |||||||| |||||||| Sbjct: 1189 aggggttctgctactgtatcttttggtga 1217
>gb|AC122463.4| Mus musculus BAC clone RP24-296C19 from 9, complete sequence Length = 162528 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ttcccaatcaccacttctctt 116 ||||||||||||||||||||| Sbjct: 103142 ttcccaatcaccacttctctt 103122
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ccaccgccgccgccacctcgt 96 ||||||||||||||||||||| Sbjct: 94490 ccaccgccgccgccacctcgt 94510
>emb|AL935040.6| Zebrafish DNA sequence from clone CH211-176L21, complete sequence Length = 159468 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1386 tttgtagaataaaaatgttgt 1406 ||||||||||||||||||||| Sbjct: 117458 tttgtagaataaaaatgttgt 117478
>emb|AL772165.15| Mouse DNA sequence from clone RP23-118G3 on chromosome 7, complete sequence Length = 135330 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1131 tgggacttccgaggcttccca 1151 ||||||||||||||||||||| Sbjct: 88807 tgggacttccgaggcttccca 88787
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 61330 cgccaccgccgccgccacctc 61310
>gb|U09964.1|MMU09964 Mus musculus ICR/Swiss glyceraldehyde 3-phosphate dehydrogenase (Gapd-S) gene, complete cds Length = 11462 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 3250 cgccaccgccgccgccacctc 3270
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctcgttc 98 ||||||||||||||||||| ||||| Sbjct: 14760 cgccaccgccgccgccaccgcgttc 14784
>gb|M60978.1|MUSGAPDS Mus musculus testis-specific isoform of glyceraldehyde 3-phosphate dehydrogenase (Gapd-S) mRNA, complete cds Length = 1457 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cgccaccgccgccgccacctc 94 ||||||||||||||||||||| Sbjct: 191 cgccaccgccgccgccacctc 211 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 262,051,177 Number of extensions: 14135727 Number of successful extensions: 315698 Number of sequences better than 10.0: 85 Number of HSP's gapped: 315687 Number of HSP's successfully gapped: 122 Length of query: 1517 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1494 Effective length of database: 18,503,978,556 Effective search space: 27644943962664 Effective search space used: 27644943962664 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)