>Q02854:NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit - Neurospora crassa|
          Length = 189
 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +1

Query: 103 ITASVKPEYPVVDRNPAFTKVVGNFSALDYMRLSTISAVSVTVGYL------SGIKPGIR 264
           I+ ++   YP++D +P F +V+G     DY+  +   A    + YL      SG+  G  
Sbjct: 11  ISKTLNTNYPLIDNDPHFRRVIGYARPSDYVHGTVAGAAGPGLLYLMEKMAPSGVGKGGF 70

Query: 265 GPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEV 375
             +M     +G  GGF+Y YQ S  R  G   N  EV
Sbjct: 71  PKAMRLATAVGFFGGFLYFYQRSILRFYGMSENAREV 107

>A0PJY2:FEZF1_HUMAN Fez family zinc finger protein 1 - Homo sapiens (Human)|
          Length = 475

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
 Frame = -1

Query: 545 LCSKAPHLLHQGQTHQVQLTHRRLDRER*KERCNTCGRETGRNDDASYHY------SLYL 384
           +C+KA H ++    H     H   D++     C TCG+   RN D   H       SL L
Sbjct: 376 ICNKAFHQVYNLTFHM----HTHNDKK--PFTCPTCGKGFCRNFDLKKHVRKLHDSSLGL 429

Query: 383 *RATSDSLGKNPIRRPAEFW*AYMNPPRT--PMRPPVTIDGPRIPGL 249
            R  +   G  P     +       PP T  P++PP+   GP  PGL
Sbjct: 430 ARTPAGEPGTEPPPPLPQ------QPPMTLPPLQPPLPTPGPLQPGL 470

>O70361:PER3_MOUSE Period circadian protein homolog 3 - Mus musculus (Mouse)|
          Length = 1113

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 654 SILTEQFTNCRVLPKWPPNFDPVITKRVKSYHEFLTTVQQGTPFITPRPDTPSAAHSQ 481
           +++T    N  + P WPP+F P  +       E    V    P + P P+  ++ HSQ
Sbjct: 835 TLMTIFLHNAPLFPLWPPSFSPYPSLGAAGSSELAPLV----PAMAPNPEPTTSGHSQ 888

>P08046:EGR1_MOUSE Early growth response protein 1 - Mus musculus (Mouse)|
          Length = 533

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 18/143 (12%)
 Frame = -1

Query: 488 THRRLDRER*KERCNTCGRETGRNDDASYHYSLYL*RATSDSLGKNPIRRP-AEFW*AYM 312
           TH R         C+ CGR+  R+D+   H  ++L R       K+ +  P A    +Y 
Sbjct: 383 THIRTHTGEKPFACDICGRKFARSDERKRHTKIHL-RQKDKKADKSVVASPAASSLSSYP 441

Query: 311 NPPRTPMRPPVTIDGP-------RIPGL----------IPER*PTVTETAEMVERRM*SS 183
           +P  T    P T   P         PG            P   P+V  T   V     + 
Sbjct: 442 SPVATSYPSPATTSFPSPVPTSYSSPGSSTYPSPAHSGFPS--PSVATTFASVPPAFPTQ 499

Query: 182 AEKLPTTLVKAGFRSTTGYSGFT 114
               P+  V + F ++TG S  T
Sbjct: 500 VSSFPSAGVSSSFSTSTGLSDMT 522

>Q8N823:ZN611_HUMAN Zinc finger protein 611 - Homo sapiens (Human)|
          Length = 705

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
 Frame = -1

Query: 554 SSLLCSKAPHLLHQGQTH------------QVQLT-HRRLDRER*KERCNTCGRETGRND 414
           SSL+C    H LH G+                QL  H R+D      +CN CG+  G+N 
Sbjct: 439 SSLVCH---HRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNS 495

Query: 413 DASYHYSLY 387
           D   H S++
Sbjct: 496 DLLIHKSIH 504

>Q8NWU8:PARC_STAAW DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain MW2)|
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>P0C1U9:PARC_STAAU DNA topoisomerase 4 subunit A - Staphylococcus aureus|
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q6G9K4:PARC_STAAS DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain|
           MSSA476)
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q6GH50:PARC_STAAR DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain|
           MRSA252)
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q93KF4:PARC_STAAN DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain N315)|
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q931S2:PARC_STAAM DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain Mu50|
           / ATCC 700699)
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q5HG64:PARC_STAAC DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain COL)|
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q2FYS4:PARC_STAA8 DNA topoisomerase 4 subunit A - Staphylococcus aureus (strain NCTC|
           8325)
          Length = 800

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 IRGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNESEVAR 381
           I+GP   TGG+I  + G   AY++  GR++     E E  R
Sbjct: 209 IKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLR 249

>Q0VGE8:Z816A_HUMAN Zinc finger protein 816A - Homo sapiens (Human)|
          Length = 652

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 485 HRRLDRER*KERCNTCGRETGRNDDASYHYSLY 387
           H+R+       +CN CGR   R     YH++L+
Sbjct: 444 HQRVHTGEKPYKCNKCGRSFSRKSSLQYHHTLH 476


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 117,731,494
Number of extensions: 2654429
Number of successful extensions: 8857
Number of sequences better than 10.0: 14
Number of HSP's gapped: 8841
Number of HSP's successfully gapped: 14
Length of query: 229
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 120
Effective length of database: 70,788,284
Effective search space: 8494594080
Effective search space used: 8494594080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)