Clone Information

BLAST Search Result

Clone Name	FLbaf95h11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	P04323:POL3_DROME Retrovirus-related Pol polyprotein from transp...	118	8e-55
2	Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transp...	99	1e-44
3	P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabdit...	98	4e-44
4	P20825:POL2_DROME Retrovirus-related Pol polyprotein from transp...	178	2e-43
5	Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein ...	89	1e-40
6	Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein ...	89	1e-39
7	Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein ...	89	1e-39
8	P10394:POL4_DROME Retrovirus-related Pol polyprotein from transp...	76	5e-34
9	Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccha...	133	6e-30
10	Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccha...	131	2e-29
11	Q02964:POL_CAMVE Enzymatic polyprotein [Contains: Aspartic prote...	72	2e-24
12	P03555:POL_CAMVC Enzymatic polyprotein [Contains: Aspartic prote...	72	2e-24
13	P03554:POL_CAMVS Enzymatic polyprotein [Contains: Aspartic prote...	71	3e-24
14	P10401:POLY_DROME Retrovirus-related Pol polyprotein from transp...	114	3e-24
15	Q00962:POL_CAMVN Enzymatic polyprotein [Contains: Aspartic prote...	70	1e-23
16	P03556:POL_CAMVD Enzymatic polyprotein [Contains: Aspartic prote...	69	4e-23
17	P92523:M860_ARATH Uncharacterized mitochondrial protein AtMg0086...	84	3e-21
18	P05400:POL_CERV Enzymatic polyprotein [Contains: Aspartic protea...	60	4e-18
19	P31843:RRPO_OENBE RNA-directed DNA polymerase homolog - Oenother...	74	7e-15
20	P09523:POL_FMVD Enzymatic polyprotein [Contains: Aspartic protea...	64	2e-13
21	P27502:POL_RTBVP Polyprotein - Rice tungro bacilliform virus (is...	54	2e-11
22	P21414:POL_GALV Pol polyprotein [Contains: Protease - Gibbon ape...	63	7e-09
23	Q9TTC1:POL_KORV Pro-Pol polyprotein - Koala retrovirus (KoRV)	60	8e-08
24	P19199:POL_COYMV Putative polyprotein [Contains: Coat protein; P...	57	7e-07
25	P31792:POL_FENV1 Pol polyprotein [Contains: Reverse transcriptas...	56	9e-07
26	P10272:POL_BAEVM Pol polyprotein [Contains: Protease - Baboon en...	54	3e-06
27	P15629:POL_SOCMV Enzymatic polyprotein [Contains: Aspartic prote...	52	1e-05
28	P11227:POL_MLVRD Pol polyprotein [Contains: Protease - Radiation...	50	8e-05
29	P26808:POL_MLVFP Pol polyprotein [Contains: Protease - Friend mu...	50	8e-05
30	P03355:POL_MLVMO Pol polyprotein [Contains: Protease - Moloney m...	49	1e-04
31	P26809:POL_MLVFF Pol polyprotein [Contains: Protease - Friend mu...	49	1e-04
32	P03356:POL_MLVAV Pol polyprotein [Contains: Protease - AKV murin...	49	1e-04
33	P26810:POL_MLVF5 Pol polyprotein [Contains: Protease - Friend mu...	48	2e-04
34	P23074:POL_SFV1 Pro-Pol polyprotein - Simian foamy virus type 1 ...	35	0.001
35	O93209:POL_FFV Pro-Pol polyprotein - Feline foamy virus (FFV) (F...	43	0.008
36	P27401:POL_SFV3L Pro-Pol polyprotein - Simian foamy virus type 3...	30	0.031
37	P14350:POL_FOAMV Pro-Pol polyprotein - Human spumaretrovirus (SF...	33	0.052
38	Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabdit...	39	0.14
39	P07572:POL_MPMV Pol polyprotein [Contains: Reverse transcriptase...	39	0.19
40	P14078:POL_HTL1C Gag-Pro-Pol polyprotein - Human T-cell leukemia...	39	0.19
41	P03362:POL_HTL1A Gag-Pro-Pol polyprotein - Human T-cell leukemia...	39	0.19
42	P0C211:POL_HTL1L Gag-Pro-Pol polyprotein - Human T-cell leukemia...	38	0.25
43	P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency v...	38	0.25
44	P04025:POL_SRV1 Pol polyprotein [Contains: Reverse transcriptase...	37	0.42
45	P11368:POL_IPMA Putative Pol polyprotein [Contains: Integrase - ...	37	0.72
46	P92522:M850_ARATH Uncharacterized mitochondrial protein AtMg0085...	37	0.72
47	P51517:POL_SRV2 Pol polyprotein [Contains: Reverse transcriptase...	34	3.6
48	P16088:POL_FIVPE Pol polyprotein [Contains: Protease - Feline im...	34	3.6
49	P04026:POL_IPHA Putative Pol polyprotein [Contains: Integrase - ...	34	4.6
50	P03363:POL_HTLV2 Gag-Pro-Pol polyprotein - Human T-cell leukemia...	34	4.6
51	P19028:POL_FIVSD Pol polyprotein [Contains: Protease - Feline im...	33	6.1
52	P10220:TEGU_HHV11 Large tegument protein - Human herpesvirus 1 (...	33	7.9
53	Q82851:POL_JEMBR Gag-Pol polyprotein - Jembrana disease virus (JDV)	33	7.9
54	P31822:POL_FIVT2 Pol polyprotein [Contains: Protease - Feline im...	33	7.9
55	Q64378:FKBP5_MOUSE FK506-binding protein 5 - Mus musculus (Mouse)	33	7.9

>P04323:POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1058
 Score =  118 bits (296), Expect(3) = 8e-55
 Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 2/188 (1%)
 Frame = +2

Query: 2003 TSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKGFMWTEQAQ--DAFDVLKKVMTT 2176
            T   E+  FLGL GYYRKF+P++  IAKP+T+ L K   + T   +   AF  LK +++ 
Sbjct: 437  TKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISE 496

Query: 2177 TPVLALPNFDKPFTIETNTCDTMMGAVLFQEGHPVSFFCMVLGVRYEQLPTYEKEFLAVM 2356
             P+L +P+F K FT+ T+  D  +GAVL Q+GHP+S+    L        T EKE LA++
Sbjct: 497  DPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIV 556

Query: 2357 MAVDKWR*YLLCGPFDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNS 2536
             A   +R YLL   F+I  D +PL  +               KL    F  +  +G +N 
Sbjct: 557  WATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENC 616

Query: 2537 AADAVSRV 2560
             ADA+SR+
Sbjct: 617  VADALSRI 624



 Score = 79.3 bits (194), Expect(3) = 8e-55
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
 Frame = +2

Query: 1367 KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWG-----FCVNYRPLNDATIKTK 1531
            + E+E Q+++M + G+I  S SPY +P+ +V K     G       ++YR LN+ T+  +
Sbjct: 220  EQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDR 279

Query: 1532 FPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLT 1711
             P+P +DE+L KL      + +D   G+H+I M  E                + MPFGL 
Sbjct: 280  HPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLK 339

Query: 1712 NAQATVECLMNAIFCKHVRKFVII 1783
            NA AT +  MN I    + K  ++
Sbjct: 340  NAPATFQRCMNDILRPLLNKHCLV 363



 Score = 60.5 bits (145), Expect(3) = 8e-55
 Identities = 25/72 (34%), Positives = 47/72 (65%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDT 1961
            ++LDDI+VFS ++++HL+ L +VFE L   +L ++  KC F+     +LGHV++ +G+  
Sbjct: 363  VYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKP 422

Query: 1962 DKENTQGTKHWP 1997
            + E  +  + +P
Sbjct: 423  NPEKIEAIQKYP 434

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>Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transposon opus [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1003

 Score = 99.0 bits (245), Expect(3) = 1e-44
 Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 18/216 (8%)
 Frame = +2

Query: 2003 TSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLL------------TKKGFMWTEQAQDA 2146
            TS  EL  FLG+  YYRKF+  Y  +AKPLT L             +K      E A  +
Sbjct: 353  TSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQS 412

Query: 2147 FDVLKKVMTTTPVLALPNFDKPFTIETNTCDTMMGAVLFQE----GHPVSFFCMVLGVRY 2314
            F+ LK ++ ++ +LA P F KPF + T+  +  +GAVL Q+      P+++    L    
Sbjct: 413  FNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTE 472

Query: 2315 EQLPTYEKEFLAVMMAVDKWR*YLL-CGPFDILIDQKPLC-SMGEQHLETELQR*AMAKL 2488
            E   T EKE LA++ ++D  R YL   G   +  D +PL  ++G ++   +L+R   A++
Sbjct: 473  ENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKR-WKARI 531

Query: 2489 VGLQFKFQCKRGLDNSAADAVSRVGKKLTSTPSQPD 2596
                 +   K G  N  ADA+SR+  +L    +  D
Sbjct: 532  EEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLD 567



 Score = 74.7 bits (182), Expect(3) = 1e-44
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
 Frame = +2

Query: 1307 TLVEGEVPVNTRPCCYSPL*------KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKK- 1465
            T V+ E+  NT+   Y+         + E+E Q+ E+   G+I  S SPY +P+ +V K 
Sbjct: 110  TAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKK 169

Query: 1466 ---NGG-MWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMR 1633
               NG   +   V+++ LN  TI   +P+P ++  L  L +A   + LD  +G+H+I M+
Sbjct: 170  PKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMK 229

Query: 1634 EEYEXXXXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRK 1771
            E                 + +PFGL NA A  + +++ I  +H+ K
Sbjct: 230  ESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGK 275



 Score = 50.4 bits (119), Expect(3) = 1e-44
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDT 1961
            +++DDI+VFSE  + H ++LR+V   L   +L V   K +F+   + +LG++++ +G+  
Sbjct: 279  VYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKA 338

Query: 1962 DKENTQGTKHWP 1997
            D +  +     P
Sbjct: 339  DPKKVRAISEMP 350

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>P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabditis elegans|
          Length = 2186

 Score = 97.8 bits (242), Expect(3) = 4e-44
 Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
 Frame = +2

Query: 2003 TSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTT 2179
            T+  EL  FLGL+GYYRKF+ ++  IA  LT L++ K  ++W ++ + AF  LKK++  T
Sbjct: 1167 TNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQT 1226

Query: 2180 PVLALPNF------DKPFTIETNTCDTMMGAVLFQEG-----HPVSFFCMVLGVRYEQLP 2326
            PVLA P+       D+PF I T+     +GAVL QEG     HP++F    L     +  
Sbjct: 1227 PVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYH 1286

Query: 2327 TYEKEFLAVMMAVDKWR*YLLCGPFDILIDQKPLCSMGE-QHLETELQR*AMAKLVGLQF 2503
              + E LA+M A+ +++  +      +  D KPL S+ +   L   L R ++ +++    
Sbjct: 1287 ITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSI-EILEFDV 1345

Query: 2504 KFQCKRGLDNSAADAVSRVG 2563
            K     G  N+ ADA+SR G
Sbjct: 1346 KIVYLAGKANAVADALSRGG 1365



 Score = 73.2 bits (178), Expect(3) = 4e-44
 Identities = 46/163 (28%), Positives = 77/163 (47%)
 Frame = +2

Query: 1262 DNV*SSSSSQCDHLVTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYA 1441
            D +  +S ++C  ++ L EG  P+  +P       K EI   +++M +  VI  S SP++
Sbjct: 922  DELGRNSGTEC--VIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWS 979

Query: 1442 TPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHR 1621
            +PV+LVKK  G    C++YR +N        PLP ++  L  L    + +  D  AG+ +
Sbjct: 980  SPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQ 1039

Query: 1622 IRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQATVECLMNAI 1750
            I + E+ +               V+PFGL  + A  +  M  I
Sbjct: 1040 IPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEI 1082



 Score = 51.2 bits (121), Expect(3) = 4e-44
 Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDT 1961
            +++DD+++ S+ ME+HL+ ++     +R   + ++ SKC+     + YLGH ++ +GV+T
Sbjct: 1093 VYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVET 1152

Query: 1962 DKENTQGTKHW--PTRLVQL 2015
             +  T   K +  PT + +L
Sbjct: 1153 QEVKTDKMKQFSRPTNVKEL 1172

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>P20825:POL2_DROME Retrovirus-related Pol polyprotein from transposon 297 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1059

 Score =  178 bits (451), Expect = 2e-43
 Identities = 141/439 (32%), Positives = 212/439 (48%), Gaps = 28/439 (6%)
 Frame = +2

Query: 1373 EIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWG-----FCVNYRPLNDATIKTKFP 1537
            E+E+QV+EM + G+I  S SPY +P  +V K     G       ++YR LN+ TI  ++P
Sbjct: 221  EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 1538 LPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNA 1717
            +P +DE+L KL      + +D   G+H+I M EE                + MPFGL NA
Sbjct: 281  IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 1718 QATVECLMNAIFC----KHVRKFV--IIIFG*HRRL**NHGE---TSRAPAHCL*TPPGT 1870
             AT +  MN I      KH   ++  IIIF        N  +   T  A A+        
Sbjct: 341  PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 1871 PFVR*GVQVQLHVRSHRLPRPRDL**GGRH*QGEYARHEALAN---TTSATELWGFLGLI 2041
             F++       H+ +    +P  +            + +A+ +    T   E+  FLGL 
Sbjct: 401  EFLKKEANFLGHIVTPDGIKPNPI------------KVKAIVSYPIPTKDKEIRAFLGLT 448

Query: 2042 GYYRKFVPHYGIIAKPLTQLLTKKGFMWTEQAQ--DAFDVLKKVMTTTPVLALPNFDKPF 2215
            GYYRKF+P+Y  IAKP+T  L K+  + T++ +  +AF+ LK ++   P+L LP+F+K F
Sbjct: 449  GYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKF 508

Query: 2216 TIETNTCDTMMGAVLFQEGHPVSFFCMVLGVRYEQLPTYEKEFLAVMMAVDKWR*YLLCG 2395
             + T+  +  +GAVL Q GHP+SF    L          EKE LA++ A   +R YLL  
Sbjct: 509  VLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGR 568

Query: 2396 PFDILIDQKP---LCSMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNSAADAVSRV-- 2560
             F I  D +P   L ++ E   + E  R    +L   QFK    +G +NS ADA+SR+  
Sbjct: 569  QFLIASDHQPLRWLHNLKEPGAKLERWR---VRLSEYQFKIDYIKGKENSVADALSRIKI 625

Query: 2561 ----GKKLTSTPSQPDNLN 2605
                  + T   ++ DN N
Sbjct: 626  EENHHSEATQHSAEEDNSN 644

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>Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 88.6 bits (218), Expect(3) = 1e-40
 Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            EL  FLG + Y RKF+P    +  PL  LL K   + WT     A + +K+ + + PVL 
Sbjct: 641  ELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLR 700

Query: 2192 LPNFDKPFTIETNTCDTMMGAVLFQEG-----HPVSFFCMVLGVRYEQLPTYEKEFLAVM 2356
              +F K   +ET+  D  +GAVL Q+      +PV ++   +          +KE LA++
Sbjct: 701  HFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAII 760

Query: 2357 MAVDKWR*YL--LCGPFDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQC--KRG 2524
             ++  WR YL     PF IL D + L        E E +R A  +L    F F+   + G
Sbjct: 761  KSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820

Query: 2525 LDNSAADAVSRVGKKLTSTP--SQPDNLNGSRKCSI 2626
              N  ADA+SR+  +    P  S+ +++N   + SI
Sbjct: 821  SANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856



 Score = 72.0 bits (175), Expect(3) = 1e-40
 Identities = 41/127 (32%), Positives = 65/127 (51%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIV 1549
            DEI   +K     G+I  S +  A PV+ V K  G     V+Y+PLN       +PLP++
Sbjct: 430  DEINQGLKS----GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 485

Query: 1550 DELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQATV 1729
            ++LL K+  + + +KLD  + YH IR+R+  E              +VMP+G++ A A  
Sbjct: 486  EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHF 545

Query: 1730 ECLMNAI 1750
            +  +N I
Sbjct: 546  QYFINTI 552



 Score = 50.1 bits (118), Expect(3) = 1e-40
 Identities = 19/70 (27%), Positives = 42/70 (60%)
 Frame = +3

Query: 1785 FLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDTD 1964
            ++DDI++ S++  +H++H++ V + L+  +L + ++KC F    + ++G+ IS +G    
Sbjct: 564  YMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 1965 KENTQGTKHW 1994
            +EN      W
Sbjct: 624  QENIDKVLQW 633



 Score = 36.2 bits (82), Expect = 0.93
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 2976 PWELLTMDFVEGFRVSEEFHTIMVVVDCVTKFVDFILLRHPFQAE*VARAFGSTSSSY 3149
            PWE L+MDF+     S  ++ + VVVD  +K    +       AE  AR F     +Y
Sbjct: 983  PWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040

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>Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 88.6 bits (218), Expect(3) = 1e-39
 Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            EL  FLG + Y RKF+P    +  PL  LL K   + WT     A + +K+ + + PVL 
Sbjct: 641  ELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLR 700

Query: 2192 LPNFDKPFTIETNTCDTMMGAVLFQEG-----HPVSFFCMVLGVRYEQLPTYEKEFLAVM 2356
              +F K   +ET+  D  +GAVL Q+      +PV ++   +          +KE LA++
Sbjct: 701  HFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAII 760

Query: 2357 MAVDKWR*YL--LCGPFDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQC--KRG 2524
             ++  WR YL     PF IL D + L        E E +R A  +L    F F+   + G
Sbjct: 761  KSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820

Query: 2525 LDNSAADAVSRVGKKLTSTP--SQPDNLNGSRKCSI 2626
              N  ADA+SR+  +    P  S+ +++N   + SI
Sbjct: 821  SANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856



 Score = 70.9 bits (172), Expect(3) = 1e-39
 Identities = 41/127 (32%), Positives = 65/127 (51%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIV 1549
            DEI   +K     G+I  S +  A PV+ V K  G     V+Y+PLN       +PLP++
Sbjct: 430  DEINQGLKS----GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 485

Query: 1550 DELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQATV 1729
            ++LL K+  + + +KLD  + YH IR+R+  E              +VMP+G++ A A  
Sbjct: 486  EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHF 545

Query: 1730 ECLMNAI 1750
            +  +N I
Sbjct: 546  QYFINTI 552



 Score = 48.1 bits (113), Expect(3) = 1e-39
 Identities = 18/70 (25%), Positives = 42/70 (60%)
 Frame = +3

Query: 1785 FLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDTD 1964
            ++D+I++ S++  +H++H++ V + L+  +L + ++KC F    + ++G+ IS +G    
Sbjct: 564  YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 1965 KENTQGTKHW 1994
            +EN      W
Sbjct: 624  QENIDKVLQW 633



 Score = 36.2 bits (82), Expect = 0.93
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 2976 PWELLTMDFVEGFRVSEEFHTIMVVVDCVTKFVDFILLRHPFQAE*VARAFGSTSSSY 3149
            PWE L+MDF+     S  ++ + VVVD  +K    +       AE  AR F     +Y
Sbjct: 983  PWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040

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>Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score = 88.6 bits (218), Expect(3) = 1e-39
 Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            EL  FLG + Y RKF+P    +  PL  LL K   + WT     A + +K+ + + PVL 
Sbjct: 641  ELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLR 700

Query: 2192 LPNFDKPFTIETNTCDTMMGAVLFQEG-----HPVSFFCMVLGVRYEQLPTYEKEFLAVM 2356
              +F K   +ET+  D  +GAVL Q+      +PV ++   +          +KE LA++
Sbjct: 701  HFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAII 760

Query: 2357 MAVDKWR*YL--LCGPFDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQC--KRG 2524
             ++  WR YL     PF IL D + L        E E +R A  +L    F F+   + G
Sbjct: 761  KSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG 820

Query: 2525 LDNSAADAVSRVGKKLTSTP--SQPDNLNGSRKCSI 2626
              N  ADA+SR+  +    P  S+ +++N   + SI
Sbjct: 821  SANHIADALSRIVDETEPIPKDSEDNSINFVNQISI 856



 Score = 70.9 bits (172), Expect(3) = 1e-39
 Identities = 41/127 (32%), Positives = 65/127 (51%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIV 1549
            DEI   +K     G+I  S +  A PV+ V K  G     V+Y+PLN       +PLP++
Sbjct: 430  DEINQGLKS----GIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 485

Query: 1550 DELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQATV 1729
            ++LL K+  + + +KLD  + YH IR+R+  E              +VMP+G++ A A  
Sbjct: 486  EQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHF 545

Query: 1730 ECLMNAI 1750
            +  +N I
Sbjct: 546  QYFINTI 552



 Score = 48.1 bits (113), Expect(3) = 1e-39
 Identities = 18/70 (25%), Positives = 42/70 (60%)
 Frame = +3

Query: 1785 FLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDTD 1964
            ++D+I++ S++  +H++H++ V + L+  +L + ++KC F    + ++G+ IS +G    
Sbjct: 564  YMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPC 623

Query: 1965 KENTQGTKHW 1994
            +EN      W
Sbjct: 624  QENIDKVLQW 633



 Score = 36.2 bits (82), Expect = 0.93
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 2976 PWELLTMDFVEGFRVSEEFHTIMVVVDCVTKFVDFILLRHPFQAE*VARAFGSTSSSY 3149
            PWE L+MDF+     S  ++ + VVVD  +K    +       AE  AR F     +Y
Sbjct: 983  PWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040

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>P10394:POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1237

 Score = 75.9 bits (185), Expect(3) = 5e-34
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
 Frame = +2

Query: 2027 FLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLALPNF 2203
            F+    YYR+F+ ++   ++ +T+L  K   F WT++ Q AF  LK  +    +L  P+F
Sbjct: 553  FVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDF 612

Query: 2204 DKPFTIETNTCDTMMGAVLFQ--EGH--PVSFFCMVLGVRYEQLPTYEKEFLAVMMAVDK 2371
             K F I T+      GAVL Q   GH  PV++             T E+E  A+  A+  
Sbjct: 613  SKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIH 672

Query: 2372 WR*YLLCGPFDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNSAADAV 2551
            +R Y+    F +  D +PL  +      +        +L    F  +  +G DN  ADA+
Sbjct: 673  FRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADAL 732

Query: 2552 SRV 2560
            SR+
Sbjct: 733  SRI 735



 Score = 69.3 bits (168), Expect(3) = 5e-34
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGG------MWGFCVNYRPLNDATIKTK 1531
            +EI+ QV+++    ++  SVS Y +P+LLV K          W   ++YR +N   +  K
Sbjct: 328  EEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADK 387

Query: 1532 FPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLT 1711
            FPLP +D++L++L  A   S LD  +G+H+I + E                   +PFGL 
Sbjct: 388  FPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLK 447

Query: 1712 NAQATVECLMNAIF 1753
             A  + + +M   F
Sbjct: 448  IAPNSFQRMMTIAF 461



 Score = 43.1 bits (100), Expect(3) = 5e-34
 Identities = 19/72 (26%), Positives = 41/72 (56%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDT 1961
            L++DD++V   + +  L++L  VF   R ++L +   KC+F    + +LGH  +++G+  
Sbjct: 471  LYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILP 530

Query: 1962 DKENTQGTKHWP 1997
            D +     +++P
Sbjct: 531  DDKKYDVIQNYP 542

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>Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1547

 Score =  133 bits (334), Expect = 6e-30
 Identities = 119/431 (27%), Positives = 184/431 (42%), Gaps = 22/431 (5%)
 Frame = +2

Query: 1367 KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPI 1546
            + EI   V+++ D   I  S SP ++PV+LV K  G +  CV+YR LN ATI   FPLP 
Sbjct: 609  EQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPR 668

Query: 1547 VDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQAT 1726
            +D LL+++ +A + + LD  +GYH+I M  +                 VMPFGL NA +T
Sbjct: 669  IDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 728

Query: 1727 VECLMNAIF--CKHVRKFV--IIIFG*HRRL**NHGETSR----------APAHCL*TPP 1864
                M   F   + V  ++  I+IF         H +T                C     
Sbjct: 729  FARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 788

Query: 1865 GTPFVR*GVQVQ-LHVRSHRLPRPRDL**GGRH*QGEYARHEALANTTSATELWGFLGLI 2041
             T F+   + +Q +    H+    RD                      +  +   FLG+I
Sbjct: 789  ETEFLGYSIGIQKIAPLQHKCAAIRD-----------------FPTPKTVKQAQRFLGMI 831

Query: 2042 GYYRKFVPHYGIIAKPLTQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLALPNFDKPFTI 2221
             YYR+F+P+   IA+P+   +  K   WTE+   A D LK  +  +PVL   N    + +
Sbjct: 832  NYYRRFIPNCSKIAQPIQLFICDKS-QWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRL 890

Query: 2222 ETNTCDTMMGAVLFQEGHP------VSFFCMVLGVRYEQLPTYEKEFLAVMMAVDKWR*Y 2383
             T+     +GAVL +  +       V +F   L    +  P  E E L ++ A+  +R Y
Sbjct: 891  TTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFR-Y 949

Query: 2384 LLCGP-FDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNSAADAVSRV 2560
            +L G  F +  D   L S+  ++      +  +  L    F  +   G  N  ADA+SR 
Sbjct: 950  MLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA 1009

Query: 2561 GKKLTSTPSQP 2593
               +T   S+P
Sbjct: 1010 VYTITPETSRP 1020

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>Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1498

 Score =  131 bits (329), Expect = 2e-29
 Identities = 118/431 (27%), Positives = 184/431 (42%), Gaps = 22/431 (5%)
 Frame = +2

Query: 1367 KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPI 1546
            + EI   V+++ D   I  S SP ++PV+LV K  G +  CV+YR LN ATI   FPLP 
Sbjct: 635  EQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPR 694

Query: 1547 VDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLTNAQAT 1726
            +D LL+++ +A + + LD  +GYH+I M  +                 VMPFGL NA +T
Sbjct: 695  IDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 754

Query: 1727 VECLMNAIF--CKHVRKFV--IIIFG*HRRL**NHGETSR----------APAHCL*TPP 1864
                M   F   + V  ++  I+IF         H +T                C     
Sbjct: 755  FARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 814

Query: 1865 GTPFVR*GVQVQ-LHVRSHRLPRPRDL**GGRH*QGEYARHEALANTTSATELWGFLGLI 2041
             T F+   + +Q +    H+    RD                      +  +   FLG+I
Sbjct: 815  ETEFLGYSIGIQKIAPLQHKCAAIRD-----------------FPTPKTVKQAQRFLGMI 857

Query: 2042 GYYRKFVPHYGIIAKPLTQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLALPNFDKPFTI 2221
             YYR+F+P+   IA+P+   +  K   WTE+   A + LK  +  +PVL   N    + +
Sbjct: 858  NYYRRFIPNCSKIAQPIQLFICDKS-QWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRL 916

Query: 2222 ETNTCDTMMGAVLFQEGHP------VSFFCMVLGVRYEQLPTYEKEFLAVMMAVDKWR*Y 2383
             T+     +GAVL +  +       V +F   L    +  P  E E L ++ A+  +R Y
Sbjct: 917  TTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFR-Y 975

Query: 2384 LLCGP-FDILIDQKPLCSMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNSAADAVSRV 2560
            +L G  F +  D   L S+  ++      +  +  L    F  +   G  N  ADA+SR 
Sbjct: 976  MLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA 1035

Query: 2561 GKKLTSTPSQP 2593
               +T   S+P
Sbjct: 1036 IYTITPETSRP 1046

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>Q02964:POL_CAMVE Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain BBC) (CaMV)
          Length = 679

 Score = 71.6 bits (174), Expect(3) = 2e-24
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV----KKNG 1471
            + L +    +  +P  YSP+ ++E + Q+KE+ D  VI  S SP+  P  LV    +K  
Sbjct: 238  IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRR 297

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N ATI   + LP  DELL  +    + S  D  +G+ ++ + +E    
Sbjct: 298  GKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                         V+PFGL  A +  +  M+  F +  RKF  +
Sbjct: 358  TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCV 400



 Score = 47.8 bits (112), Expect(3) = 2e-24
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPL-TQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P    I KPL  +L     + WT++       +KK +   P L 
Sbjct: 479  QLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLH 538

Query: 2192 LPNFDKPFTIETNTCDT----MMGAVLFQEGHPVSFFCMVLGVRYE----QLPTYEKEFL 2347
             P  ++   IET+  D     M+ A+   EG      C      ++       + +KE L
Sbjct: 539  HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETL 598

Query: 2348 AVMMAVDKWR*YLLCGPFDILIDQKPLCSM------GEQHLETELQR*AMAKLVGLQFKF 2509
            AV+  + K+  YL    F I  D     S       G+  L   ++    A L    F  
Sbjct: 599  AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--WQAWLSHYSFDV 656

Query: 2510 QCKRGLDNSAADAVSRVGKKLTS 2578
            +  +G DN  AD +SR   K+ S
Sbjct: 657  EHIKGTDNHFADFLSREFNKVNS 679



 Score = 36.2 bits (82), Expect(3) = 2e-24
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDI+VFS   E HL H+ ++ +    H + + + K       I +LG
Sbjct: 400  VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449

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>P03555:POL_CAMVC Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain CM-1841) (CaMV)
          Length = 679

 Score = 71.6 bits (174), Expect(3) = 2e-24
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV----KKNG 1471
            + L +    +  +P  YSP+ ++E + Q+KE+ D  VI  S SP+  P  LV    +K  
Sbjct: 238  IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRR 297

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N ATI   + LP  DELL  +    + S  D  +G+ ++ + +E    
Sbjct: 298  GKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                         V+PFGL  A +  +  M+  F +  RKF  +
Sbjct: 358  TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCV 400



 Score = 47.8 bits (112), Expect(3) = 2e-24
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPL-TQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P    I KPL  +L     + WT++       +KK +   P L 
Sbjct: 479  QLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLH 538

Query: 2192 LPNFDKPFTIETNTCDT----MMGAVLFQEGHPVSFFCMVLGVRYE----QLPTYEKEFL 2347
             P  ++   IET+  D     M+ A+   EG      C      ++       + +KE L
Sbjct: 539  HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETL 598

Query: 2348 AVMMAVDKWR*YLLCGPFDILIDQKPLCSM------GEQHLETELQR*AMAKLVGLQFKF 2509
            AV+  + K+  YL    F I  D     S       G+  L   ++    A L    F  
Sbjct: 599  AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--WQAWLSHYSFDV 656

Query: 2510 QCKRGLDNSAADAVSRVGKKLTS 2578
            +  +G DN  AD +SR   K+ S
Sbjct: 657  EHIKGTDNHFADFLSREFNKVNS 679



 Score = 36.2 bits (82), Expect(3) = 2e-24
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDI+VFS   E HL H+ ++ +    H + + + K       I +LG
Sbjct: 400  VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449

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>P03554:POL_CAMVS Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain Strasbourg) (CaMV)
          Length = 679

 Score = 71.2 bits (173), Expect(3) = 3e-24
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV----KKNG 1471
            + L +    +  +P  YSP+ ++E + Q+KE+ D  VI  S SP+  P  LV    +K  
Sbjct: 238  IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRR 297

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N AT+   + LP  DELL  +    + S  D  +G+ ++ + +E    
Sbjct: 298  GKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                         V+PFGL  A +  +  M+  F +  RKF  +
Sbjct: 358  TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCV 400



 Score = 47.8 bits (112), Expect(3) = 3e-24
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPL-TQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P    I KPL  +L     + WT++       +KK +   P L 
Sbjct: 479  QLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLH 538

Query: 2192 LPNFDKPFTIETNTCDT----MMGAVLFQEGHPVSFFCMVLGVRY----EQLPTYEKEFL 2347
             P  ++   IET+  D     M+ A+   EG      C      +    +   + +KE L
Sbjct: 539  HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETL 598

Query: 2348 AVMMAVDKWR*YLLCGPFDILIDQKPLCSM------GEQHLETELQR*AMAKLVGLQFKF 2509
            AV+  + K+  YL    F I  D     S       G+  L   ++    A L    F  
Sbjct: 599  AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--WQAWLSHYSFDV 656

Query: 2510 QCKRGLDNSAADAVSRVGKKLTS 2578
            +  +G DN  AD +SR   K+ S
Sbjct: 657  EHIKGTDNHFADFLSREFNKVNS 679



 Score = 36.2 bits (82), Expect(3) = 3e-24
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDI+VFS   E HL H+ ++ +    H + + + K       I +LG
Sbjct: 400  VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 449

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>P10401:POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy [Includes:|
            Reverse transcriptase - Drosophila melanogaster (Fruit
            fly)
          Length = 1035

 Score =  114 bits (285), Expect = 3e-24
 Identities = 108/439 (24%), Positives = 191/439 (43%), Gaps = 30/439 (6%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNG-GMWG-----FCVNYRPLNDATIKTK 1531
            D + ++VK++   G+I  S SPY +P  +V K G   +G       +++R LN+ TI  +
Sbjct: 195  DFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDR 254

Query: 1532 FPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXXXXXXXXXIVMPFGLT 1711
            +P+P +  +L  L  A   + LD  +GYH+I + E                   +PFGL 
Sbjct: 255  YPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLR 314

Query: 1712 NAQATVECLMNAIFCKHVRKFV------IIIFG*HRRL**NHGET---SRAPAHCL*TPP 1864
            NA +  +  ++ +  + + K        +IIF  +      H +T       A+   +  
Sbjct: 315  NASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQE 374

Query: 1865 GTPFVR*GVQVQLHVRSHRLPRPRDL**GGRH*QGEYARHEALANTTSATELWGFLGLIG 2044
             T F +  V+    + S           G +    +    +         ++  FLGL  
Sbjct: 375  KTRFFKESVEYLGFIVSKD---------GTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 425

Query: 2045 YYRKFVPHYGIIAKPLTQLLT------------KKGFMWTEQAQDAFDVLKKVMTTTPV- 2185
            YYR F+  +  IA+P+T +L             K    + E  ++AF  L+ ++ +  V 
Sbjct: 426  YYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVI 485

Query: 2186 LALPNFDKPFTIETNTCDTMMGAVLFQEGHPVSFFCMVLGVRYEQLPTYEKEFLAVMMAV 2365
            L  P+F KPF + T+   + +GAVL QEG P++     L    +   T E+E LA++ A+
Sbjct: 486  LKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWAL 545

Query: 2366 DKWR*YLL-CGPFDILIDQKPLC-SMGEQHLETELQR*AMAKLVGLQFKFQCKRGLDNSA 2539
             K + +L      +I  D +PL  ++ +++   +++R   + +     K   K G +N  
Sbjct: 546  GKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKR-WKSYIDQHNAKVFYKPGKENFV 604

Query: 2540 ADAVSRVGKKLTSTPSQPD 2596
            ADA+SR          Q D
Sbjct: 605  ADALSRQNLNALQNEPQSD 623

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>Q00962:POL_CAMVN Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain NY8153) (CaMV)
          Length = 680

 Score = 70.1 bits (170), Expect(3) = 1e-23
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLVK---KNG- 1471
            + L +    +  +P  YSP+ ++E + Q+KE+ D  VI  S SP+  P  LV    +NG 
Sbjct: 239  IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGR 298

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N AT+   + LP  DELL  +    + S  D  +G+ ++ + +E    
Sbjct: 299  GNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 358

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                         V+PFGL  A +  +  M+  F +  RKF  +
Sbjct: 359  TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCV 401



 Score = 45.4 bits (106), Expect(3) = 1e-23
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P+   + +PL   L +   + WT++       +KK +   P L 
Sbjct: 480  QLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLH 539

Query: 2192 LPNFDKPFTIETNTCDT----MMGAVLFQEGHPVSFFCMVLGVRYE----QLPTYEKEFL 2347
             P  ++   IET+  D     M+ A+   EG      C      ++       + +KE L
Sbjct: 540  HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETL 599

Query: 2348 AVMMAVDKWR*YLLCGPFDILIDQKPLCSM------GEQHLETELQR*AMAKLVGLQFKF 2509
            AV+  + K+  YL    F I  D     S       G+  L   ++    A L    F  
Sbjct: 600  AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--WQAWLSHYSFDV 657

Query: 2510 QCKRGLDNSAADAVSRVGKKLTS 2578
            +  +G DN  AD +SR   K+ S
Sbjct: 658  EHIKGTDNHFADFLSREFNKVNS 680



 Score = 37.4 bits (85), Expect(3) = 1e-23
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDIVVFS   E HL H+ ++ +    H + + + K       I +LG
Sbjct: 401  VYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 450

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>P03556:POL_CAMVD Enzymatic polyprotein [Contains: Aspartic protease - Cauliflower|
            mosaic virus (strain D/H) (CaMV)
          Length = 674

 Score = 68.6 bits (166), Expect(3) = 4e-23
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV----KKNG 1471
            + L +    +  +P  YSP+ ++E + Q+KE+ D  VI  S SP+  P  LV    +K  
Sbjct: 233  IKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRR 292

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N AT+   +  P  DELL  +    + S  D  +G+ ++ + +E    
Sbjct: 293  GKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 352

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                         V+PFGL  A +  +  M+  F +  RKF  +
Sbjct: 353  TAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF-RVFRKFCCV 395



 Score = 46.6 bits (109), Expect(3) = 4e-23
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 15/203 (7%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPL-TQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P    I KPL  +L     + WT++       +KK +   P L 
Sbjct: 474  QLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLH 533

Query: 2192 LPNFDKPFTIETNTCDT----MMGAVLFQEGHPVSFFCMVLGVRY----EQLPTYEKEFL 2347
             P  ++   IET+  D     M+ A+   EG      C      +    +   + +KE L
Sbjct: 534  HPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETL 593

Query: 2348 AVMMAVDKWR*YLLCGPFDILIDQKPLCSM------GEQHLETELQR*AMAKLVGLQFKF 2509
            AV+  + K+  YL    F I  D     S       G+  L   ++    A L    F  
Sbjct: 594  AVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIR--WQAWLSHYSFDV 651

Query: 2510 QCKRGLDNSAADAVSRVGKKLTS 2578
            +  +G DN  AD +SR   ++ S
Sbjct: 652  EHIKGTDNHFADFLSREFNRVNS 674



 Score = 36.2 bits (82), Expect(3) = 4e-23
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDI+VFS   E HL H+ ++ +    H + + + K       I +LG
Sbjct: 395  VYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG 444

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>P92523:M860_ARATH Uncharacterized mitochondrial protein AtMg00860 - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 158

 Score = 84.0 bits (206), Expect(2) = 3e-21
 Identities = 41/70 (58%), Positives = 48/70 (68%)
 Frame = +2

Query: 2006 SATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKGFMWTEQAQDAFDVLKKVMTTTPV 2185
            + TEL GFLGL GYYR+FV +YG I +PLT+LL K    WTE A  AF  LK  +TT PV
Sbjct: 62   NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPV 121

Query: 2186 LALPNFDKPF 2215
            LALP+   PF
Sbjct: 122  LALPDLKLPF 131



 Score = 41.2 bits (95), Expect(2) = 3e-21
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 1830 LEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG--HVISNEGVDTDKENTQGTKHWP 1997
            + HL +V +    H  +    KC F    I YLG  H+IS EGV  D    +    WP
Sbjct: 1    MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

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>P05400:POL_CERV Enzymatic polyprotein [Contains: Aspartic protease - Carnation etched|
            ring virus (CERV)
          Length = 659

 Score = 60.1 bits (144), Expect(3) = 4e-18
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV----KKNG 1471
            + L++ +  V  +P  YSP  ++E + Q+KE+ +  VI  S S + +P  LV    ++  
Sbjct: 220  IELIDPKTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRR 279

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N AT      LP  DELL  +    + S  D  +G  ++ + +E +  
Sbjct: 280  GKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLL 339

Query: 1652 XXXXXXXXXXXXIVMPFGLTNA 1717
                         V+PFGL  A
Sbjct: 340  TAFTCPQGHYQWNVVPFGLKQA 361



 Score = 47.8 bits (112), Expect(3) = 4e-18
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPL-TQLLTKKGFMWTEQAQDAFDVLKKVMTTTPVLA 2191
            +L  FLG++ Y   ++P    I KPL ++L     + W +        +KK + + P L 
Sbjct: 463  QLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLY 522

Query: 2192 LPNFDKPFTIETNTCDTMMGAVLFQEGHPVSFFCMVLGVRYE----QLPTYEKEFLAVMM 2359
             P  +    IET+  +   G +L    +   + C      ++       + EKE LAV+ 
Sbjct: 523  HPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIR 582

Query: 2360 AVDKWR*YLLCGPFDILIDQK 2422
             + K+  YL    F I  D K
Sbjct: 583  VIKKFSIYLTPSRFLIRTDNK 603



 Score = 26.2 bits (56), Expect(3) = 4e-18
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEK-HLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            +++DDI+VFS T  K H  H+  +        + + + K     + I +LG
Sbjct: 383  VYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLG 433

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>P31843:RRPO_OENBE RNA-directed DNA polymerase homolog - Oenothera bertiana (Bertero's|
            evening primrose)
          Length = 142

 Score = 74.3 bits (181), Expect(2) = 7e-15
 Identities = 38/99 (38%), Positives = 57/99 (57%)
 Frame = +2

Query: 1487 CVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXXXXXXX 1666
            C++YR L   TIK K+P+P VD+L ++L  A   +KLD  +GY ++R+ +  E       
Sbjct: 9    CIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVT 68

Query: 1667 XXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFVII 1783
                    VMPFGLTNA AT   LMN +  +++  FV++
Sbjct: 69   RYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVV 107



 Score = 29.3 bits (64), Expect(2) = 7e-15
 Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
 Frame = +3

Query: 1782 LFLDDIVVF---SETMEKHLEHLRIVFE 1856
            ++LDD+VV+   S ++ +H++HLR+V E
Sbjct: 107  VYLDDLVVYTIYSNSLHEHIKHLRVVRE 134

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>P09523:POL_FMVD Enzymatic polyprotein [Contains: Aspartic protease - Figwort mosaic|
            virus (strain DxS) (FMV)
          Length = 666

 Score = 63.9 bits (154), Expect(2) = 2e-13
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNG---- 1471
            + L++    +  +P  YSP  ++    Q+KE+ D G+I  S S + +P  LV+       
Sbjct: 231  IKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRR 290

Query: 1472 GMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
            G     VNY+ +N ATI     LP + ELL  L   ++ S  D  +G+ ++ + EE +  
Sbjct: 291  GKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKL 350

Query: 1652 XXXXXXXXXXXXIVMPFGLTNA 1717
                         V+PFGL  A
Sbjct: 351  TAFTCPQGHFQWKVVPFGLKQA 372



 Score = 34.7 bits (78), Expect(2) = 2e-13
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISN----- 1946
            +++DDI+VFS +   H  H+  V + +  + + + + K N   + I +LG  I       
Sbjct: 393  VYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCP 452

Query: 1947 -----EGVDTDKENTQGTKHWPTRLVQLSYGDSW 2033
                 E +    +  +  KH    L  L+Y +++
Sbjct: 453  QNHILENIHKFPDRLEDKKHLQRFLGVLTYAETY 486



 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
 Frame = +2

Query: 2027 FLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTTPVLALPNF 2203
            FLG++ Y   ++P    I KPL   L K   + WT+   D    +KK + + P L LP  
Sbjct: 476  FLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKP 535

Query: 2204 DKPFTIETNTCDTMMGAVLFQEG-HPVSFFCMVLGVRYEQLP----TYEKEFLAVMMAVD 2368
            +    IET+  D+  G VL       V   C      ++Q      + +KE LAV   + 
Sbjct: 536  EDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVIT 595

Query: 2369 KWR*YLLCGPFDILIDQKPLCSMGEQHLETELQR*AMAK----LVGLQFKFQCKRGLDNS 2536
            K+  YL    F +  D K        +L+ + ++  + +        QF  +   G+ N 
Sbjct: 596  KFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQFDVEHLEGVKNV 655

Query: 2537 AADAVSR 2557
             AD ++R
Sbjct: 656  LADCLTR 662

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>P27502:POL_RTBVP Polyprotein - Rice tungro bacilliform virus (isolate Philippines)|
            (RTBV)
          Length = 1675

 Score = 54.3 bits (129), Expect(2) = 2e-11
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 6/154 (3%)
 Frame = +2

Query: 1310 LVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHS--VSPYATPVLLVKKNGGMWG 1483
            ++  ++ +      Y+P  K+  E Q+KE+ D  +I  +     + T   +V+ +     
Sbjct: 1177 IINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVA 1236

Query: 1484 ----FCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEYEXX 1651
                   NY+ LND      F +P    ++N +  A + SK D  AG+H ++++++++  
Sbjct: 1237 QKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDW 1296

Query: 1652 XXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIF 1753
                         V PFG+ NA    +  M   F
Sbjct: 1297 TTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESF 1330



 Score = 37.7 bits (86), Expect(2) = 2e-11
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLG 1931
            L++DDI++ S   ++H+EHL+I F  ++     + + K       + YLG
Sbjct: 1338 LYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLG 1387

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>P21414:POL_GALV Pol polyprotein [Contains: Protease - Gibbon ape leukemia virus|
            (GALV)
          Length = 1165

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
 Frame = +2

Query: 2003 TSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTT 2176
            T+  ++  FLG  G+ R ++P +  +A PL  L TK+   F+WTE+ Q AFD +KK + +
Sbjct: 412  TTPRQVREFLGTAGFCRLWIPGFASLAAPLYPL-TKESIPFIWTEEHQQAFDHIKKALLS 470

Query: 2177 TPVLALPNFDKPFTIETNTCDTMMGAVLFQE----GHPVSFFCMVLGVRYEQLPTYEKEF 2344
             P LALP+  KPFT+  +    +   VL Q       PV++    L       PT  K  
Sbjct: 471  APALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAV 530

Query: 2345 LAVMM 2359
             AV +
Sbjct: 531  AAVAL 535



 Score = 33.9 bits (76), Expect = 4.6
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +2

Query: 1301 LVTLVEGEVPVNTRPCCYSPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMW 1480
            +V L  G  PV  R    S   ++ I   +++  D GV+    SP+ TP+L VKK G   
Sbjct: 166  VVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPG--- 222

Query: 1481 GFCVNYRPLND 1513
                +YRP+ D
Sbjct: 223  --TNDYRPVQD 231

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>Q9TTC1:POL_KORV Pro-Pol polyprotein - Koala retrovirus (KoRV)|
          Length = 1127

 Score = 59.7 bits (143), Expect = 8e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
 Frame = +2

Query: 2003 TSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKK-GFMWTEQAQDAFDVLKKVMTTT 2179
            T+  ++  FLG  G+ R ++P +  +A PL  L  +K  F WTE  Q+AF  +K+ + + 
Sbjct: 374  TTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSA 433

Query: 2180 PVLALPNFDKPFTIETNTCDTMMGAVLFQE----GHPVSFFCMVLGVRYEQLPTYEKEFL 2347
            P LALP+  KPF +  +  + +   VL Q       PV++    L       PT  K   
Sbjct: 434  PALALPDLTKPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIA 493

Query: 2348 AVMM 2359
            AV +
Sbjct: 494  AVAL 497

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>P19199:POL_COYMV Putative polyprotein [Contains: Coat protein; Protease - Commelina|
            yellow mottle virus (CoYMV)
          Length = 1886

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 83/398 (20%), Positives = 150/398 (37%), Gaps = 36/398 (9%)
 Frame = +2

Query: 1304 VTLVEGEVPVNTRPCCY-SPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLV------- 1459
            + ++  ++ +  RP  + +P  ++ +  Q+  +    VI  S S + +   +V       
Sbjct: 1393 LNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEID 1452

Query: 1460 ----KKNGGMWGFCVNYRPLNDATIKTKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIR 1627
                K+  G      NY+ LN+ T   ++ LP ++ +++K+  + + SK D  +G+ ++ 
Sbjct: 1453 PITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVA 1512

Query: 1628 MREEYEXXXXXXXXXXXXXXIVMPFGLTNAQATVECLMNAIFCKHVRKFV------IIIF 1789
            M EE                +VMPFGL NA A  +  M+ +F K   KF+      I++F
Sbjct: 1513 MEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVF-KGTEKFIAVYIDDILVF 1571

Query: 1790 G*HRRL**NHGETS----------RAPAHCL*TPPGTPFVR*GVQ-VQLHVRSHRLPRPR 1936
                     H  T            +P       P   F+   +   ++ ++ H + +  
Sbjct: 1572 SETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKIC 1631

Query: 1937 DL**GGRH*QGEYARHEALANTTSATELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG 2116
            D               E LA         G L    Y R ++   G + +PL Q +   G
Sbjct: 1632 DF------------SDEKLATPEGMRSWLGIL---SYARNYIQDIGKLVQPLRQKMAPTG 1676

Query: 2117 -FMWTEQAQDAFDVLKKVMTTTPVLALPNFDKPFTIETNTCDTMMGAVL-----FQEGHP 2278
                  +       +K+ +   P L LP  D    IET+ C T  GAV        +   
Sbjct: 1677 DKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRS 1736

Query: 2279 VSFFCMVLGVRYEQL-PTYEKEFLAVMMAVDKWR*YLL 2389
                C      +  +  T + E  A +  +DK++ Y L
Sbjct: 1737 TERICAYASGSFNPIKSTIDAEIQAAIHGLDKFKIYYL 1774

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>P31792:POL_FENV1 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Feline endogenous virus ECE1
          Length = 1046

 Score = 56.2 bits (134), Expect = 9e-07
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG-FMWTEQAQDAFDVLKKVMTTTPVLA 2191
            E+  FLG  G+ R ++P +  +A PL  L  +   F W E+ Q AF+ LK+ + + P L 
Sbjct: 274  EVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALG 333

Query: 2192 LPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
            LP+  KPFT+  +    +   VL Q+  P
Sbjct: 334  LPDTSKPFTLFIDEKQGIAKGVLTQKLGP 362

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>P10272:POL_BAEVM Pol polyprotein [Contains: Protease - Baboon endogenous virus (strain|
            M7)
          Length = 1189

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            E+  FLG  G+ R ++P +  +A PL   LTK+   F W  + Q AF+ LKK + + P L
Sbjct: 417  EVREFLGTAGFCRLWIPGFAELAAPL-YALTKESTPFTWQTEHQLAFEALKKALLSAPAL 475

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPFT+  +    +   VL Q+  P
Sbjct: 476  GLPDTSKPFTLFLDERQGIAKGVLTQKLGP 505

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>P15629:POL_SOCMV Enzymatic polyprotein [Contains: Aspartic protease - Soybean|
            chlorotic mottle virus
          Length = 692

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
 Frame = +2

Query: 1373 EIEHQVKEMQDGGVITHSVSPYATPVLLVKKNG----GMWGFCVNYRPLNDATIKTKFPL 1540
            E + + +++   G+I  S SP++ P   V+ +     G     +NY+ +N+ATI   + L
Sbjct: 218  EFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKL 277

Query: 1541 PIVDELLNKLTHAAVLSKLDFCAGYHRIRMRE 1636
            P  D +L K+  +   S LD  +GY+++R+ E
Sbjct: 278  PRKDFILEKIKGSLWFSSLDAKSGYYQLRLHE 309



 Score = 37.4 bits (85), Expect = 0.42
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 1785 FLDDIVVFSE-TMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEG-VD 1958
            ++DDI++F++ + E+H+  +RIV + ++   + + + K   +   I YLG  I   G +D
Sbjct: 359  YIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEID 418

Query: 1959 TDKENTQGTKHWPTRL 2006
                  +    +P  L
Sbjct: 419  LSPHTQEKILQFPDEL 434

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>P11227:POL_MLVRD Pol polyprotein [Contains: Protease - Radiation murine leukemia virus|
          Length = 1196

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G+ R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 419  QLREFLGTAGFCRLWIPRFAEMAAPLYPL-TKTGTLFNWGPDQQKAYHEIKQALLTAPAL 477

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 478  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 507

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>P26808:POL_MLVFP Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate PVC-211) (FrMLV)
          Length = 1204

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G+ R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 424  QLREFLGTAGFCRLWIPGFAEMAAPLYPL-TKTGTLFKWGPDQQKAYQEIKQALLTAPAL 482

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 483  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 512

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>P03355:POL_MLVMO Pol polyprotein [Contains: Protease - Moloney murine leukemia virus|
            (MoMLV)
          Length = 1199

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G+ R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 419  QLREFLGTAGFCRLWIPGFAEMAAPLYPL-TKTGTLFNWGPDQQKAYQEIKQALLTAPAL 477

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 478  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 507

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>P26809:POL_MLVFF Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate FB29) (FrMLV)
          Length = 1204

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G+ R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 424  QLREFLGTAGFCRLWIPGFAEMAAPLYPL-TKTGTLFEWGPDQQKAYQEIKQALLTAPAL 482

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 483  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 512

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>P03356:POL_MLVAV Pol polyprotein [Contains: Protease - AKV murine leukemia virus (AKR|
            (endogenous) murine leukemia virus)
          Length = 1196

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G+ R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 419  QLREFLGTAGFCRLWIPGFAEMAAPLYPL-TKTGTLFNWGPDQQKAYQEIKQALLTAPAL 477

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 478  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 507

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>P26810:POL_MLVF5 Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate 57) (FrMLV)
          Length = 1204

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTKKG--FMWTEQAQDAFDVLKKVMTTTPVL 2188
            +L  FLG  G  R ++P +  +A PL  L TK G  F W    Q A+  +K+ + T P L
Sbjct: 424  QLREFLGTAGLCRLWIPGFAEMAAPLYPL-TKTGTLFKWGPDQQKAYQEIKQALLTAPAL 482

Query: 2189 ALPNFDKPFTIETNTCDTMMGAVLFQEGHP 2278
             LP+  KPF +  +        VL Q+  P
Sbjct: 483  GLPDLTKPFELFVDEKQGYAKGVLTQKLGP 512

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>P23074:POL_SFV1 Pro-Pol polyprotein - Simian foamy virus type 1 (SFVmac) (SFV-1)|
          Length = 1149

 Score = 35.0 bits (79), Expect(2) = 0.001
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTK---KGFMWTEQAQDAFDVLKKVMTTTPV 2185
            +L   LGL+ + R F+P+Y  + KPL  ++     K   WTE   +    +  V+     
Sbjct: 389  QLQSILGLLNFARNFIPNYSELVKPLYTIVANANGKFISWTEDNSNQLQHIISVLNQADN 448

Query: 2186 LALPNFDKPFTIETNTCDTMMGAVLFQEG 2272
            L   N +    I+ N+  +      + EG
Sbjct: 449  LEERNPETRLIIKVNSSPSAGYIRYYNEG 477



 Score = 29.6 bits (65), Expect(2) = 0.001
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 1785 FLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEG---V 1955
            ++DDI +  +  ++HLE L  +F  L      V   K       + +LG  I+ EG    
Sbjct: 312  YVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLT 371

Query: 1956 DTDKE 1970
            DT K+
Sbjct: 372  DTFKQ 376

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>O93209:POL_FFV Pro-Pol polyprotein - Feline foamy virus (FFV) (Feline syncytial|
            virus)
          Length = 1156

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEG--- 1952
            +++DD+ +  ++ ++HLE+L I+F  L+     +   K N     + +LG  I+NEG   
Sbjct: 308  VYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNEGRGL 367

Query: 1953 VDTDKENTQGTKHWPTRLVQL 2015
             DT KE  +     PT L QL
Sbjct: 368  TDTFKEKLENITA-PTTLKQL 387



 Score = 33.9 bits (76), Expect = 4.6
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
 Frame = +2

Query: 1985 EALANTTSAT---ELWGFLGLIGYYRKFVPHYGIIAKPLTQLL---TKKGFMWTEQAQDA 2146
            E L N T+ T   +L   LGL+ + R F+P +  +  PL  L+   TK    W  +    
Sbjct: 373  EKLENITAPTTLKQLQSILGLLNFARNFIPDFTELIAPLYALIPKSTKNYVPWQIEHSTT 432

Query: 2147 FDVLKKVMTTTPVLALPNFDKPFTIETNTCDTMMGAVLFQEGH--PVSFFCMV 2299
             + L   +     L     DK   ++ N   T      + EG   P+S+  +V
Sbjct: 433  LETLITKLNGAEYLQGRKGDKTLIMKVNASYTTGYIRYYNEGEKKPISYVSIV 485



 Score = 33.5 bits (75), Expect = 6.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 1355 SPL*KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDAT 1519
            +P  K +I+  + ++   GV+    S   TPV  V K  G W   ++YR +N  T
Sbjct: 168  NPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVT 222

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>P27401:POL_SFV3L Pro-Pol polyprotein - Simian foamy virus type 3 (strain LK3) (SFVagm)|
            (SFV-3)
          Length = 1143

 Score = 30.4 bits (67), Expect(2) = 0.031
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTK---KGFMWTEQAQDAFDVLKKVMTTTPV 2185
            +L   LGL+ + R F+P++  + KPL  ++     K   WT         +  ++ +   
Sbjct: 389  QLQSILGLLNFARNFIPNFSELVKPLYNIIATANGKYITWTTDNSQQLQNIISMLNSAEN 448

Query: 2186 LALPNFDKPFTIETNT 2233
            L   N +    ++ NT
Sbjct: 449  LEERNPEVRLIMKVNT 464



 Score = 29.6 bits (65), Expect(2) = 0.031
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEG 1952
            +++DDI +  +   +HLE L  VF  L      V   K       + +LG  I+ EG
Sbjct: 311  VYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNITKEG 367

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>P14350:POL_FOAMV Pro-Pol polyprotein - Human spumaretrovirus (SFVcpz(hu)) (Human foamy|
            virus)
          Length = 1143

 Score = 32.7 bits (73), Expect(2) = 0.052
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 2015 ELWGFLGLIGYYRKFVPHYGIIAKPLTQLLTK---KGFMWTEQAQDAFDVLKKVMTTTPV 2185
            +L   LGL+ + R F+P++  + +PL  L+     K   W+E+     +++ + + T   
Sbjct: 389  QLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASN 448

Query: 2186 LALPNFDKPFTIETNT 2233
            L     ++   I+ NT
Sbjct: 449  LEERLPEQRLVIKVNT 464



 Score = 26.6 bits (57), Expect(2) = 0.052
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEG 1952
            +++DDI +  +  ++H++ L  VF+ L      V   K       + +LG  I+ EG
Sbjct: 311  VYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEG 367

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>Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabditis elegans|
          Length = 1268

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 1782 LFLDDIVVFSETMEKHLEHLRIVFEHLRAHHLFVKESKCNFMCDHIVYLGHVISNEGVDT 1961
            ++ DDI++ + ++E+H + LR +FE  + +   V   KC F    + +LG V    G   
Sbjct: 592  VYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFV-DEHGRRP 650

Query: 1962 DKENTQGTKHW--PTRLVQLS 2018
            D + T+  +    PT   QL+
Sbjct: 651  DSKKTEAIRSMKAPTDQKQLA 671

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>P07572:POL_MPMV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer
            virus)
          Length = 867

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 1358 PL*KDEI---EHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLN 1510
            PL  D++   +  V+E  + G IT S SP+ TP+ ++KK  G W    + R +N
Sbjct: 38   PLTNDKLAAAQQLVQEQLEAGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVN 91

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>P14078:POL_HTL1C Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate|
            Caribbea HS-35 subtype A) (HTLV-1)
          Length = 1462

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = +2

Query: 1376 IEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIVDE 1555
            ++H V++  + G I     P   PV  VKK  G W F  + R  N  TI      P   +
Sbjct: 606  LQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPD 665

Query: 1556 LLNKLTHAAVLSKLDFCAGYHRIRMREEYE 1645
            L +  T  A L  +D    + +I + ++++
Sbjct: 666  LSSLPTTLAHLQTIDLKDAFFQIPLPKQFQ 695

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>P03362:POL_HTL1A Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (strain Japan|
            ATK-1 subtype A) (HTLV-1)
          Length = 1462

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = +2

Query: 1376 IEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIVDE 1555
            ++H V++  + G I     P   PV  VKK  G W F  + R  N  TI      P   +
Sbjct: 606  LQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPD 665

Query: 1556 LLNKLTHAAVLSKLDFCAGYHRIRMREEYE 1645
            L +  T  A L  +D    + +I + ++++
Sbjct: 666  LSSLPTTLAHLQTIDLRDAFFQIPLPKQFQ 695

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>P0C211:POL_HTL1L Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate|
            Melanesia mel5 subtype C) (HTLV-1)
          Length = 1462

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +2

Query: 1376 IEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIVDE 1555
            ++H V++  + G I     P   PV  VKK  G W F  + R  N  T+      P   +
Sbjct: 606  LQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTVDLSSSSPGPPD 665

Query: 1556 LLNKLTHAAVLSKLDFCAGYHRIRMREEYE 1645
            L +  T  A L  +D    + +I + ++++
Sbjct: 666  LSSLPTTLAHLQTIDLKDAFFQIPLPKQFQ 695

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>P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency virus (strain R29)|
            (BIV) (Bovine immunodeficiency-like virus)
          Length = 1475

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
 Frame = +2

Query: 1358 PL*KDE---IEHQVKEMQDGGVITHSV--SPYATPVLLVKKNG-GMWGFCVNYRPLNDAT 1519
            PL K++   ++  VK++   G I+ +   +PY TPV ++KK G G W   +++R LN  T
Sbjct: 600  PLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKKKGTGRWRMLMDFRELNKIT 659

Query: 1520 IK-----TKFPLPIVDELLNKLTHAAVLSKLDFCAGYHRIRMREEY 1642
            +K     T  P P        +     L+ +D    Y  I + E++
Sbjct: 660  VKGQEFSTGLPYP------PGIKECEHLTAIDIKDAYFTIPLHEDF 699

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>P04025:POL_SRV1 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Simian retrovirus SRV-1
          Length = 867

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 1388 VKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLN 1510
            V+E  + G IT S SP+ TP+ ++KK  G W    + R +N
Sbjct: 51   VQEQLEAGHITESNSPWNTPIFVIKKKSGKWRLLQDLRAVN 91

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>P11368:POL_IPMA Putative Pol polyprotein [Contains: Integrase - Mouse intracisternal|
            a-particle MIA14 (IAP-MIA14)
          Length = 867

 Score = 36.6 bits (83), Expect = 0.72
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 1388 VKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLND 1513
            V+E    G I  S SP+ TP+ ++KK  G W    + RP+N+
Sbjct: 48   VEEQLKLGHIDPSTSPWNTPIFVIKKKSGKWRLLHDLRPINE 89

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>P92522:M850_ARATH Uncharacterized mitochondrial protein AtMg00850 - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 107

 Score = 36.6 bits (83), Expect = 0.72
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = +2

Query: 1367 KDEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMW 1480
            +  +++ + EM +  +I  S+SPY++PVLLV+K  G W
Sbjct: 42   RTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

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>P51517:POL_SRV2 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Simian retrovirus SRV-2
          Length = 867

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 1388 VKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLN 1510
            V+E    G I  S SP+ TP+ ++KK  G W    + R +N
Sbjct: 51   VQEQLQAGHIIESNSPWNTPIFVIKKKSGKWRLLQDLRAVN 91

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>P16088:POL_FIVPE Pol polyprotein [Contains: Protease - Feline immunodeficiency virus|
            (isolate Petaluma) (FIV)
          Length = 1124

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 1358 PL*KDEIE---HQVKEMQDGGVITHSVS--PYATPVLLVKKNGGMWGFCVNYRPLNDATI 1522
            PL  ++IE     V+ ++  G +  + S  P+ TPV  +KK  G W   +++R LN  T 
Sbjct: 181  PLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTE 240

Query: 1523 K 1525
            K
Sbjct: 241  K 241

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>P04026:POL_IPHA Putative Pol polyprotein [Contains: Integrase - Hamster|
            intracisternal a-particle H18 (IAP-H18)
          Length = 863

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 1370 DEIEHQVKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLND 1513
            + +   V+E +  G +  S SP+ TP+ ++KK  G W    + R +N+
Sbjct: 31   EAVTRLVQEQERLGHLEPSTSPWNTPIFVIKKKSGKWRLLHDLRAINN 78

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>P03363:POL_HTLV2 Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 2 (HTLV-2)|
          Length = 1461

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +2

Query: 1388 VKEMQDGGVITHSVSPYATPVLLVKKNGGMWGFCVNYRPLNDATIKTKFPLPIVDELLNK 1567
            V +  + G I     P   PV  VKK  G W F  + R  N  T     P P   +L + 
Sbjct: 608  VSKALEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPDLTSL 667

Query: 1568 LTHAAVLSKLDFCAGYHRIRMREEYE 1645
             T    L  +D    + +I + ++Y+
Sbjct: 668  PTALPHLQTIDLTDAFFQIPLPKQYQ 693

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>P19028:POL_FIVSD Pol polyprotein [Contains: Protease - Feline immunodeficiency virus|
            (strain San Diego) (FIV)
          Length = 1124

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 1430 SPYATPVLLVKKNGGMWGFCVNYRPLNDATIK 1525
            +P+ TPV  +KK  G W   +++R LN  T K
Sbjct: 210  NPWNTPVFAIKKKSGKWRMLIDFRELNKLTEK 241

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>P10220:TEGU_HHV11 Large tegument protein - Human herpesvirus 1 (strain 17) (HHV-1)|
            (Human herpes simplex virus 1)
          Length = 3164

 Score = 33.1 bits (74), Expect = 7.9
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = +3

Query: 942  GVGDRCIRWHPRDGMARSV*SHDLPLERQVGQVPPDGEVVTLHNVGMASKPMLKPATSEE 1121
            G+G+ C+   PR+G+         P      Q PP             S+    P+   E
Sbjct: 290  GLGEPCVGVGPREGVGGPG-----PHPPTAAQSPPPTRARRDDRASETSRGTAGPSAKPE 344

Query: 1122 LRKMI-AGNDVWAMALMDTDSRHPPSTRKGGSQTP 1223
             ++   A +DVWA+AL  T    PPS     +  P
Sbjct: 345  AKRPNRAPDDVWAVALKGTPPTDPPSADPPSADPP 379

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>Q82851:POL_JEMBR Gag-Pol polyprotein - Jembrana disease virus (JDV)|
          Length = 1432

 Score = 33.1 bits (74), Expect = 7.9
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 1388 VKEMQDGGVITHSV--SPYATPVLLVKKNGG-MWGFCVNYRPLNDATIK 1525
            V+E+   G I+ +   +P+ TPV ++KK GG  W   +++R LN  T K
Sbjct: 573  VEELLKDGKISRTPWDNPFNTPVFVIKKKGGSKWRMLMDFRALNKVTNK 621

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>P31822:POL_FIVT2 Pol polyprotein [Contains: Protease - Feline immunodeficiency virus|
            (isolate TM2) (FIV)
          Length = 1124

 Score = 33.1 bits (74), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 1430 SPYATPVLLVKKNGGMWGFCVNYRPLNDATIK 1525
            +P+ TPV  +KK  G W   +++R LN  T K
Sbjct: 209  NPWNTPVFAIKKKSGKWRMLIDFRVLNKLTDK 240

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>Q64378:FKBP5_MOUSE FK506-binding protein 5 - Mus musculus (Mouse)|
          Length = 456

 Score = 33.1 bits (74), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 3104 LKRVSQKDEVDELGDAIDNHHDGVEFLGDSKSLHEVHGEKLPGGIGMGRG 2955
            +KRV   DE    GD +  H+ G+  L D K     H  K P    +G+G
Sbjct: 37   VKRVGTSDEAPMFGDKVYVHYKGM--LSDGKKFDSSHDRKKPFAFSLGQG 84


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 640,955,655
Number of extensions: 15246320
Number of successful extensions: 41153
Number of sequences better than 10.0: 55
Number of HSP's gapped: 41070
Number of HSP's successfully gapped: 106
Length of query: 1117
Length of database: 100,686,439
Length adjustment: 124
Effective length of query: 993
Effective length of database: 66,673,859
Effective search space: 66207141987
Effective search space used: 66207141987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result