ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf97j24 |
|---|---|
| Clone Library Name | barley_pub |
>P12011:GNTK_BACSU Gluconokinase - Bacillus subtilis| Length = 513 Score = 48.1 bits (113), Expect = 1e-04 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 26/208 (12%) Frame = +1 Query: 775 DVRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGSTLAIKLVSRVRVEDARFG 954 ++ Q G + G +D + + L G+ ++G++ AI+ + D + Sbjct: 220 EIAIQMGIDPETPFVIGASDGVLSNLGVNAIKKGEIAVTIGTSGAIRTIIDKPQTDEKGR 279 Query: 955 VYSHRMDDQ-WLVGGASNSGGVVLRQL---FSDDQLVTLSR-DID--------------- 1074 ++ + + D+ W++GG N+GG+VLR + F+ ++ T +R ID Sbjct: 280 IFCYALTDKHWVIGGPVNNGGIVLRWIRDEFASSEIETATRLGIDPYDVLTKIAQRVRPG 339 Query: 1075 XXXXXXHDYYPLPKSGERFPVSDPDMEPRL------EPRPDSDAEYLHGILESMARIEAR 1236 H Y +GER P+ +PD+ + L G++ ++ + Sbjct: 340 SDGLLFHPYL----AGERAPLWNPDVRGSFFGLTMSHKKEHMIRAALEGVIYNLYTV--- 392 Query: 1237 GYKLLKELGATPVEEVFTSGGGAQNEKW 1320 + L E PV + +GG A++E W Sbjct: 393 -FLALTECMDGPVTRIQATGGFARSEVW 419
>P27155:XYLB_STAXY Xylulose kinase - Staphylococcus xylosus| Length = 483 Score = 47.8 bits (112), Expect = 1e-04 Identities = 84/382 (21%), Positives = 150/382 (39%), Gaps = 26/382 (6%) Frame = +1 Query: 289 WREALFHLLGDIPSVHRPS-ISSISIDGTSATTLIIDRNNGELLAGPFLYN--------E 441 W EA L I + + + ++ IS G ++ID+ G + L+N E Sbjct: 50 WYEATLESLKYILNHYTHNDLTGISFSGQMHGLVVIDQE-GNPIRPAILWNDTRTSQEVE 108 Query: 442 SFPDALPMVKSIAPANHTVCSGSSTLCKLVSWWNKHYSNGGDDSAILMHQSDWLLWLLHG 621 L + + +TV G TL KL+ W H + M D++++ L G Sbjct: 109 DIKKNLGLNSLLQLTQNTVLEGF-TLPKLM-WLKNHEQDNYKRIYKFMLPKDYIVYKLTG 166 Query: 622 KYGV--SDYNNTLKVGYDPEIGSYPSWLMSQPYSHML---PS---SIRAPGVPIGPIKED 777 SD T+ E +W S H L PS I A G + E Sbjct: 167 NVYTEPSDAAGTIMFSVKDE-----NW--STELLHRLNIDPSICPEIIASHQKSGQLTEK 219 Query: 778 VRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGST-LAIKLVSRVRVE-DARF 951 V++ G ++ + G ++ L + TD K + S+G++ +A+ + + E D Sbjct: 220 VKNTLGIDSNINVYQGGANNACGALGSGITDEQKQLVSIGTSGVALSIENSTDYENDGNV 279 Query: 952 GVYSHRMDDQWLVGGASNSGGVVL---RQLFS-DDQLVTLSRDIDXXXXXXHDYYPLPKS 1119 ++H + +Q + G + S G L +QL S D+ T +DI+ + P Sbjct: 280 HYFNHCVPNQKYIMGVTLSAGYSLEWLKQLISADENFTTFLKDINQSEVGANGLMYTPYL 339 Query: 1120 -GERFPVSDPDMEPRLE--PRPDSDAEYLHGILESMARIEARGYKLLKELGATPVEEVFT 1290 GER P +D + + + ++E + ++K A + E+ + Sbjct: 340 LGERTPHNDASVRGSFIGLDANTTQLDMKRAVIEGITYSINESIHIMKN-NAININEIVS 398 Query: 1291 SGGGAQNEKWTAIRERVLGVPV 1356 GGGA+N +W I+ + + Sbjct: 399 IGGGAKNNQWLQIQADIFNTTI 420
>P39211:XYLB_BACSU Xylulose kinase - Bacillus subtilis| Length = 499 Score = 46.2 bits (108), Expect = 4e-04 Identities = 78/385 (20%), Positives = 151/385 (39%), Gaps = 20/385 (5%) Frame = +1 Query: 274 NWAGSWREALFHLLGDIPSVHRPSISSISIDGTSATTLIIDRNNGELLAGPFLYNES--F 447 +W EAL L+ I +V I IS G +++D++ ++L L+N++ Sbjct: 49 DWVQQTIEALAELVS-ISNVQAKDIDGISYSGQMHGLVLLDQDR-QVLRNAILWNDTRTT 106 Query: 448 PDALPMVKSIAP-----ANHTVCSGSSTLCKLVSWWNKHYSNGGDDSAILMHQSDWLLW- 609 P + M + + V G TL K++ W +H +A+ + D++ + Sbjct: 107 PQCIRMTEKFGDHLLDITKNRVLEGF-TLPKML-WVKEHEPELFKKTAVFLLPKDYVRFR 164 Query: 610 ---LLHGKYGVSDYNNTLKVGYDPEIGSYPSWLMSQPYSHMLPSSIRAPGVPIGPIKEDV 780 ++H +Y SD TL + + S + + P + + +G + V Sbjct: 165 MTGVIHTEY--SDAAGTLLLHITRKEWSNDICNQIGISADICPPLVESHDC-VGSLLPHV 221 Query: 781 RSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGSTLAIKLVSRVRVEDARFGV- 957 ++ G + G D+ + A GK + S+G++ I + D + V Sbjct: 222 AAKTGLLEKTKVYAGGADNACGAIGAGILSSGKTLCSIGTSGVILSYEEEKERDFKGKVH 281 Query: 958 -YSHRMDDQWLVGGASNSGGVVL----RQLFSDDQLVTLSRDIDXXXXXXHDYYPLPKS- 1119 ++H D + G + + G L R ++ L + ++ + P Sbjct: 282 FFNHGKKDSFYTMGVTLAAGYSLDWFKRTFAPNESFEQLLQGVEAIPIGANGLLYTPYLV 341 Query: 1120 GERFPVSDPDMEPRLEPRPDSD--AEYLHGILESMARIEARGYKLLKELGATPVEEVFTS 1293 GER P +D + L + +L I+E + +L +E G + V V + Sbjct: 342 GERTPHADSSIRGSLIGMDGAHNRKHFLRAIMEGITFSLHESIELFREAGKS-VHTVVSI 400 Query: 1294 GGGAQNEKWTAIRERVLGVPVRKAE 1368 GGGA+N+ W ++ + V K E Sbjct: 401 GGGAKNDTWLQMQADIFNTRVIKLE 425
>P44401:XYLB_HAEIN Xylulose kinase - Haemophilus influenzae| Length = 493 Score = 44.3 bits (103), Expect = 0.002 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 21/234 (8%) Frame = +1 Query: 265 QSTNWAGSWREALFHLLG-------DIPSVHRPSISSISIDGTSATTLIIDRNNGELLAG 423 Q NW W EAL L + P + I I G +++D+N+ L Sbjct: 44 QQPNW---WIEALQQALQIALKQAKNSPHFSPNLVKGIGISGQQHGLVMLDKNDRPLYKA 100 Query: 424 PF-------LYNESFPDALPMVKSIAPANHTVCSGSSTLCKLVSWWNKHYSNGGDDSAIL 582 N+ + L ++ +C T KL SW+ ++Y + + + Sbjct: 101 KLWCDTETATENDILIEKLGGQTAVFEKLGIICQTGYTASKL-SWFRQNYPDKFANIRKI 159 Query: 583 MHQSDWLLWLLHGKYGV-------SDYNNTLKVGYDPEIGSYPSWLMSQPYSHMLPSSIR 741 M D+L + L GK+ S Y + +K + E+ Y + ++ +LP + Sbjct: 160 MLPHDYLNYWLTGKFCTEFGDASGSGYFDVVKREWKREVFKYLAPELNM--DEVLPKLLS 217 Query: 742 APGVPIGPIKEDVRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGST 903 A IG IK ++ + +GF+ + ++ TG D++ + G A SLG++ Sbjct: 218 AEQ-KIGVIKPEIATLFGFNENVIVSTGGGDNMMGAIGTGNIREGIATMSLGTS 270
>P46834:GNTK_BACLI Gluconokinase - Bacillus licheniformis| Length = 513 Score = 42.0 bits (97), Expect = 0.008 Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 26/208 (12%) Frame = +1 Query: 775 DVRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGSTLAIKLVSRVRVEDARFG 954 ++ + G G +D + + L G+ ++G++ AI+ + D + Sbjct: 220 ELAAMMGIDPQTPFVIGASDGVLSNLGVNAIKKGEIAVTIGTSGAIRPIIDKPQTDEKGR 279 Query: 955 VYSHRM-DDQWLVGGASNSGGVVLRQL---FSDDQLVTLSR-DID--------------- 1074 ++ + + ++ W++GG N+GG+VLR + F+ ++ T R ID Sbjct: 280 IFCYALTENHWVIGGPVNNGGIVLRWIRDEFASSEIETAKRLGIDPYDVLTKIAERVRPG 339 Query: 1075 XXXXXXHDYYPLPKSGERFPVSDPDMEPRL------EPRPDSDAEYLHGILESMARIEAR 1236 H Y +GER P+ +PD+ + L G++ ++ + Sbjct: 340 ADGLLFHPYL----AGERAPLWNPDVPGSFFGLTMSHKKEHMIRAALEGVIYNLYTV--- 392 Query: 1237 GYKLLKELGATPVEEVFTSGGGAQNEKW 1320 + L E PV + +GG A+++ W Sbjct: 393 -FLALTECMDGPVARIQATGGFARSDVW 419
>Q9LBQ3:ARAB_MYCSM Ribulokinase - Mycobacterium smegmatis| Length = 563 Score = 38.9 bits (89), Expect = 0.065 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 10/114 (8%) Frame = +1 Query: 592 SDWLLWLLHGKYGVSDYNNTLKVGYDP--EIGSYPSWL----MSQPYSHMLPSSIRAP-- 747 +DW++W L G+Y N GY + G YPS ++ ++ + I P Sbjct: 191 ADWIVWQLTGRY----VRNISTAGYKAIRQDGKYPSRAFLAELNPGFASFVEDKIEQPIG 246 Query: 748 --GVPIGPIKEDVRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGST 903 G G + + G V+ G D+ AA DPG+ + +G++ Sbjct: 247 RLGEAAGTLTAQAAAWTGLPEGIVVAVGNIDAHVTAAAADAADPGRLIAIMGTS 300
>P55875:IF2_STIAU Translation initiation factor IF-2 - Stigmatella aurantiaca| Length = 1054 Score = 37.7 bits (86), Expect = 0.15 Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 10/162 (6%) Frame = -3 Query: 1384 TPPLSALPSEQAPQALSPGSPSTSHSAHLPLTXXXXXXXXXXXPSAVYTHGPRSAPWIPI 1205 T P++ P+ +AP+A +P +P + A P T P + +P+ Sbjct: 152 TAPVAPEPTVEAPKAAAPVAPEPTVEA--PKTEAPVAAAPIAEAPT-----PPARTEVPV 204 Query: 1204 CHASTRHRCRVEAPALAPCRGR------RQGTSRRSWAEDSSHEGK----EMTGRCPCSA 1055 CR AP PC G+ S ++ D+ + G +GR Sbjct: 205 TSGRRAASCRGAAPL--PCSGKDPLALNSSPQSSAAFCPDARNPGDCDFPSTSGRWHAWP 262 Query: 1054 SQAGRR*RVAGAPHPRCWTPRRRATGRPSGGCRRRTLRLPRG 929 S+ GA P WT R +GRP RR ++ P G Sbjct: 263 SRGSSGRFAHGAGRPSGWTFARWTSGRPRAASRRTAVQRPSG 304
>Q6DA23:RHAB_ERWCT Rhamnulokinase - Erwinia carotovora subsp. atroseptica| (Pectobacterium atrosepticum) Length = 496 Score = 36.2 bits (82), Expect = 0.42 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +1 Query: 1165 EPRPDSDAEYLHGILESMARIEARGYKLLKELGATPVEEVFTSGGGAQNEKWTAIRERVL 1344 +P P SDAE I +S+A + + L EL P+ ++ GGG+QN + V Sbjct: 358 QPVPQSDAELARCIFDSLALLYRQVVLELGELRHAPIRQLHIVGGGSQNAFLNQLCADVC 417 Query: 1345 GVPV 1356 +PV Sbjct: 418 QIPV 421
>P11553:FUCK_ECOLI L-fuculokinase - Escherichia coli| Length = 482 Score = 35.8 bits (81), Expect = 0.55 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +1 Query: 1192 YLHGILESMARIEARGYKLLKELGATPVEEVFTSGGGAQNEKWTAIRERVLGVPVR 1359 + LE + R ++L+++G E+ GGG++N W I+ +L +PV+ Sbjct: 375 FYRAALEGLTAQLQRNLQMLEKIGHFKASELLLVGGGSRNTLWNQIKANMLDIPVK 430
>Q8A1A3:RHAB_BACTN Rhamnulokinase - Bacteroides thetaiotaomicron| Length = 485 Score = 35.4 bits (80), Expect = 0.72 Identities = 17/64 (26%), Positives = 32/64 (50%) Frame = +1 Query: 1165 EPRPDSDAEYLHGILESMARIEARGYKLLKELGATPVEEVFTSGGGAQNEKWTAIRERVL 1344 +P P+ + + I ES+A + + L+ L P+E + GGG++N+ + Sbjct: 360 QPVPEQRGQIVRCIFESLALRYRQVLENLRALSPRPIETLHVIGGGSRNDLLNQFTANAI 419 Query: 1345 GVPV 1356 G+PV Sbjct: 420 GIPV 423
>O58348:Y614_PYRHO Uncharacterized protein PH0614 precursor - Pyrococcus horikoshii| Length = 332 Score = 34.7 bits (78), Expect = 1.2 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = +1 Query: 616 HGKYGVSDYNNTLKVGYDPEIGSYPSWLMSQPYSHMLPSSIRAPGVPIGP------IKED 777 H ++D + + V D I +L+S PYSH+ I AP +P+ P K Sbjct: 19 HSVLAINDNYDLIIVRNDDLI----DYLISLPYSHL----INAPILPVNPKELDPVTKAQ 70 Query: 778 VRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLG 897 + S D V+ G T++++ + D G +VT +G Sbjct: 71 LYSYIQLGRDKVLIIGNTNAVSLDVEKELRDMGFSVTRIG 110
>P37677:LYXK_ECOLI L-xylulose/3-keto-L-gulonate kinase - Escherichia coli| Length = 498 Score = 34.7 bits (78), Expect = 1.2 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 6/165 (3%) Frame = +1 Query: 526 LVSWWNKHYSNGGDDSAILMHQSDWLLWLLHGKYGVSDYNNTLKVGYDPEIGSY----PS 693 L+ W +H +M D+L W L G G + N + Y+ +G Y Sbjct: 138 LLRWLKEHEPERYAQIGCVMMTHDYLRWCLTGVKGCEESNISESNLYNMSLGEYDPCLTD 197 Query: 694 WLMSQPYSHMLPSSIRAPGVPIGPIKEDVRSQYGFSNDCVICTGTTDSIAAFLAARTTDP 873 WL +H LP + + + G I + G + G D ++ L A D Sbjct: 198 WLGIAEINHALPPVVGSAEI-CGEITAQTAALTGLKAGTPVVGGLFDVVSTALCAGIEDE 256 Query: 874 GKAVTSLGSTLAIKLVSR-VRVEDARFGVYSHRMDD-QWLVGGAS 1002 +G+ ++R +R +A VY ++D +++V AS Sbjct: 257 FTLNAVMGTWAVTSGITRGLRDGEAHPYVYGRYVNDGEFIVHEAS 301
>Q99087:LDLR1_XENLA Low-density lipoprotein receptor 1 precursor - Xenopus laevis| (African clawed frog) Length = 909 Score = 33.5 bits (75), Expect = 2.7 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = -2 Query: 1415 APLSASNAAPYAASVCSAFRTGTPSTLSRIAVHFSFCAPPPDVKTSSTGVAPSSFSSLYP 1236 AP++ + +AP + +A T +TL++I S AP K +ST +AP ++ P Sbjct: 734 APVTTTTSAPVTTTSTTARPTSRSTTLAKITSTTSTLAPQRP-KMASTTIAPQRPTTNSP 792 Query: 1235 RASIRAMDSNMP 1200 + ++R + +P Sbjct: 793 KTTLRMITEKVP 804
>Q8ZMC5:FUCK_SALTY L-fuculokinase - Salmonella typhimurium| Length = 472 Score = 32.7 bits (73), Expect = 4.7 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +1 Query: 1192 YLHGILESMARIEARGYKLLKELGATPVEEVFTSGGGAQNEKWTAIRERVLGVPVR 1359 + LE + R + L+++G E+ GGG++N W I+ L +P++ Sbjct: 365 FYRAALEGLTAQLQRNLRTLEKIGHFNATELLLVGGGSRNALWNQIKANQLDIPIK 420
>Q8Z428:FUCK_SALTI L-fuculokinase - Salmonella typhi| Length = 472 Score = 32.7 bits (73), Expect = 4.7 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +1 Query: 1192 YLHGILESMARIEARGYKLLKELGATPVEEVFTSGGGAQNEKWTAIRERVLGVPVR 1359 + LE + R + L+++G E+ GGG++N W I+ L +P++ Sbjct: 365 FYRAALEGLTAQLQRNLRTLEKIGHFNATELLLVGGGSRNALWNQIKANQLDIPIK 420
>Q893Q3:GLPK1_CLOTE Glycerol kinase 1 - Clostridium tetani| Length = 498 Score = 32.0 bits (71), Expect = 8.0 Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 13/270 (4%) Frame = +1 Query: 598 WLLW-LLHGKYGVSDYNNTLKVG-YDPEIGSYPSWLMSQPYSHMLPSSIRAPGVPIGPIK 771 WL+W L GK V+DY+N + Y+ + L+ + +P S+ P + Sbjct: 167 WLIWNLTKGKVHVTDYSNASRTMIYNIHELKWDDELLE---ALDIPKSMLPEVKPSSYVY 223 Query: 772 EDVRSQYGFSNDCVICTGTTDSIAAFLAARTTDPGKAVTSLGSTLAIKLVS---RVRVED 942 + S F + I D AA G A ++ G+ + + + V+ E+ Sbjct: 224 GETNSTL-FGSSIPIAGVAGDQQAALFGQMCHQEGTAKSTYGTGCFLLMNTGEKAVKSEN 282 Query: 943 ARFGVYSHRMDD--QWLVGGASNSGGVVLRQLFSDDQLVTLSRDIDXXXXXXHD---YYP 1107 + +DD ++ + G+ GG ++ L + +++ S + + D Y Sbjct: 283 GLLTTIAFGIDDKVEYALEGSIFIGGAAIQWLRDELRMLKDSPESERYATAVEDTNGVYM 342 Query: 1108 LPKS-GERFPVSDPDMEPRLE--PRPDSDAEYLHGILESMARIEARGYKLLKELGATPVE 1278 +P G P DP + R + ++ LES+A ++E ++ Sbjct: 343 VPAFVGLGAPYWDPYARGAIVGLTRGATKEHFIRATLESLAYQTYDVLNAMREDSGIDLK 402 Query: 1279 EVFTSGGGAQNEKWTAIRERVLGVPVRKAE 1368 + GG + N+ + +LGVPV++ E Sbjct: 403 ALRVDGGASANDFLMQFQADILGVPVQRPE 432 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 331,708,957 Number of extensions: 8071932 Number of successful extensions: 27125 Number of sequences better than 10.0: 16 Number of HSP's gapped: 27040 Number of HSP's successfully gapped: 16 Length of query: 557 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 439 Effective length of database: 68,319,629 Effective search space: 29992317131 Effective search space used: 29992317131 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
