ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf97j24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001065975.1| Oryza sativa (japonica cultivar-group) Os07g0409200 (Os07g0409200) mRNA, partial cds Length = 1842 Score = 293 bits (148), Expect = 1e-75 Identities = 483/594 (81%), Gaps = 3/594 (0%) Strand = Plus / Plus Query: 568 gattcggcgatactgatgcaccaatcagactggctgctgtggcttttgcatgggaaatac 627 ||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| Sbjct: 155 gattcagcgatactgatgcaccagtcagactggttgctctggcttttgcatggagaatat 214 Query: 628 ggtgtttccgattacaacaatactctcaaggtagggtatgatccagagattgggtcatac 687 |||||||| ||||| ||||| ||||| ||||| || || ||||||||||||| || ||| Sbjct: 215 ggtgtttctgattataacaacactctgaaggtgggctacgatccagagattgactcgtac 274 Query: 688 ccaagctggctcatgtcacagccatactcacacatgttgccttcttccatcagagcacct 747 ||||| ||| | |||||||||||||| | |||||||||| ||| | |||||||| Sbjct: 275 ccaagttggttgatgtcacagccatatgcttacatgttgccgtctg---ttagagcaccc 331 Query: 748 ggagttcccattggcccaatcaaagaagatgtacgctcacaatacggcttttccaatgac 807 |||| ||| |||||| ||||||| || ||||||||| |||| | || ||| |||| || Sbjct: 332 ggagctccaattggctcaatcaaggaggatgtacgcgcacagtttggatttcccaagaac 391 Query: 808 tgcgtgatctgtactgggacgaccgacagcatcgctgcctttcttgcagcacgaaccact 867 |||||| |||||||||| || || |||||||| || || ||||| ||||| || ||||| Sbjct: 392 tgcgtggtctgtactggaacaacggacagcatagccgcttttctcgcagcgcgcaccaca 451 Query: 868 gatccaggaaaagctgtgacgtcgttgggttcaactcttgcaatcaagctcgtcagcaga 927 || || || ||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 452 gagcccgggaaagctgtgacgtcgttgggttcaactctggcgatcaagctgctgagcaac 511 Query: 928 gtccgcgtggaagacgcaaggttcggcgtctacagccaccggatggacgaccagtggctc 987 | ||||||||| ||||| |||||||||| |||||||| ||| |||||||| |||||| Sbjct: 512 gcccgcgtggacgacgcgcggttcggcgtgtacagccatcggctggacgacatgtggctg 571 Query: 988 gtcggcggggcgtccaacagcgggggtgtggtgctccggcaactcttcagcgacgaccag 1047 ||||| || |||||||||| ||| || | || ||| |||| ||||||| |||||| ||| Sbjct: 572 gtcgggggcgcgtccaacaccggcggcgccgtcctcaggcagctcttcaccgacgatcag 631 Query: 1048 cttgtgacgctgagcagggacatcgacccgtcatctccttcccctcatgactactatcct 1107 || || | || ||| || ||||||||||| |||||||| || || ||||| ||| Sbjct: 632 ctcgtcgctctcagccacgagatcgacccgtcggttccttcccttctcgattactaccct 691 Query: 1108 ctgcccaagagcggcgagaggttccctgtctccgaccccgacatggagccaagg 1161 ||||| ||||| || || ||||||||||||||||||||| ||||| ||||||| Sbjct: 692 ctgcctaagagaggagaaaggttccctgtctccgaccccaacatgatgccaagg 745 Score = 97.6 bits (49), Expect = 1e-16 Identities = 97/113 (85%) Strand = Plus / Plus Query: 430 ctctacaacgagagcttccccgacgctctgcccatggtcaaatcgatcgctcctgcgaat 489 |||||||||||||||||| | ||||| ||||| ||| ||||||| || || || ||| Sbjct: 14 ctctacaacgagagcttcgcagacgcgctgccagcagtcgaatcgattgccccggcaaat 73 Query: 490 cacacggtgtgttccggttcgtccaccctgtgcaagctcgtgtcatggtggaa 542 || |||||| |||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 74 catacggtgcgttctggttcgtccaccctgtgcaagcttgtgtcatggtggaa 126 Score = 73.8 bits (37), Expect = 2e-09 Identities = 145/181 (80%) Strand = Plus / Plus Query: 1237 gggtataaactgctgaaggagctcggcgctacgccggtggaggaggtctttacgtcaggg 1296 ||||| || ||| |||||||||||||||| | |||||||||||| || ||| | || Sbjct: 1520 gggtacaatctgttgaaggagctcggcgcgagcatggtggaggaggttttgacggcgggt 1579 Query: 1297 ggaggtgcgcagaatgagaagtggacggcgatccgggagagagtgcttggggtgcctgtt 1356 ||||| || | ||| || |||||||||||||| ||| || |||||||| || || || Sbjct: 1580 ggaggagctcggaacgataagtggacggcgataaggggaagggtgcttggcgttccggtg 1639 Query: 1357 cggaaggcagagcagacagaggcggcgtacggagctgcattgctagcactgaggggtgct 1416 | ||||| |||||||| |||||||| ||||| |||||| |||||||||| | ||||||| Sbjct: 1640 agaaaggcggagcagacggaggcggcctacggggctgcactgctagcactcaagggtgct 1699 Query: 1417 a 1417 | Sbjct: 1700 a 1700 Score = 42.1 bits (21), Expect = 6.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1191 gtacttgcatggcatattggaatccatggcgcggatcgagg 1231 |||||||||||||||| |||| || || |||||||| |||| Sbjct: 1022 gtacttgcatggcatactggagtcgatcgcgcggattgagg 1062
>dbj|AK119912.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D01, full insert sequence Length = 1842 Score = 293 bits (148), Expect = 1e-75 Identities = 483/594 (81%), Gaps = 3/594 (0%) Strand = Plus / Plus Query: 568 gattcggcgatactgatgcaccaatcagactggctgctgtggcttttgcatgggaaatac 627 ||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| Sbjct: 155 gattcagcgatactgatgcaccagtcagactggttgctctggcttttgcatggagaatat 214 Query: 628 ggtgtttccgattacaacaatactctcaaggtagggtatgatccagagattgggtcatac 687 |||||||| ||||| ||||| ||||| ||||| || || ||||||||||||| || ||| Sbjct: 215 ggtgtttctgattataacaacactctgaaggtgggctacgatccagagattgactcgtac 274 Query: 688 ccaagctggctcatgtcacagccatactcacacatgttgccttcttccatcagagcacct 747 ||||| ||| | |||||||||||||| | |||||||||| ||| | |||||||| Sbjct: 275 ccaagttggttgatgtcacagccatatgcttacatgttgccgtctg---ttagagcaccc 331 Query: 748 ggagttcccattggcccaatcaaagaagatgtacgctcacaatacggcttttccaatgac 807 |||| ||| |||||| ||||||| || ||||||||| |||| | || ||| |||| || Sbjct: 332 ggagctccaattggctcaatcaaggaggatgtacgcgcacagtttggatttcccaagaac 391 Query: 808 tgcgtgatctgtactgggacgaccgacagcatcgctgcctttcttgcagcacgaaccact 867 |||||| |||||||||| || || |||||||| || || ||||| ||||| || ||||| Sbjct: 392 tgcgtggtctgtactggaacaacggacagcatagccgcttttctcgcagcgcgcaccaca 451 Query: 868 gatccaggaaaagctgtgacgtcgttgggttcaactcttgcaatcaagctcgtcagcaga 927 || || || ||||||||||||||||||||||||||||| || |||||||| | |||| Sbjct: 452 gagcccgggaaagctgtgacgtcgttgggttcaactctggcgatcaagctgctgagcaac 511 Query: 928 gtccgcgtggaagacgcaaggttcggcgtctacagccaccggatggacgaccagtggctc 987 | ||||||||| ||||| |||||||||| |||||||| ||| |||||||| |||||| Sbjct: 512 gcccgcgtggacgacgcgcggttcggcgtgtacagccatcggctggacgacatgtggctg 571 Query: 988 gtcggcggggcgtccaacagcgggggtgtggtgctccggcaactcttcagcgacgaccag 1047 ||||| || |||||||||| ||| || | || ||| |||| ||||||| |||||| ||| Sbjct: 572 gtcgggggcgcgtccaacaccggcggcgccgtcctcaggcagctcttcaccgacgatcag 631 Query: 1048 cttgtgacgctgagcagggacatcgacccgtcatctccttcccctcatgactactatcct 1107 || || | || ||| || ||||||||||| |||||||| || || ||||| ||| Sbjct: 632 ctcgtcgctctcagccacgagatcgacccgtcggttccttcccttctcgattactaccct 691 Query: 1108 ctgcccaagagcggcgagaggttccctgtctccgaccccgacatggagccaagg 1161 ||||| ||||| || || ||||||||||||||||||||| ||||| ||||||| Sbjct: 692 ctgcctaagagaggagaaaggttccctgtctccgaccccaacatgatgccaagg 745 Score = 97.6 bits (49), Expect = 1e-16 Identities = 97/113 (85%) Strand = Plus / Plus Query: 430 ctctacaacgagagcttccccgacgctctgcccatggtcaaatcgatcgctcctgcgaat 489 |||||||||||||||||| | ||||| ||||| ||| ||||||| || || || ||| Sbjct: 14 ctctacaacgagagcttcgcagacgcgctgccagcagtcgaatcgattgccccggcaaat 73 Query: 490 cacacggtgtgttccggttcgtccaccctgtgcaagctcgtgtcatggtggaa 542 || |||||| |||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 74 catacggtgcgttctggttcgtccaccctgtgcaagcttgtgtcatggtggaa 126 Score = 73.8 bits (37), Expect = 2e-09 Identities = 145/181 (80%) Strand = Plus / Plus Query: 1237 gggtataaactgctgaaggagctcggcgctacgccggtggaggaggtctttacgtcaggg 1296 ||||| || ||| |||||||||||||||| | |||||||||||| || ||| | || Sbjct: 1520 gggtacaatctgttgaaggagctcggcgcgagcatggtggaggaggttttgacggcgggt 1579 Query: 1297 ggaggtgcgcagaatgagaagtggacggcgatccgggagagagtgcttggggtgcctgtt 1356 ||||| || | ||| || |||||||||||||| ||| || |||||||| || || || Sbjct: 1580 ggaggagctcggaacgataagtggacggcgataaggggaagggtgcttggcgttccggtg 1639 Query: 1357 cggaaggcagagcagacagaggcggcgtacggagctgcattgctagcactgaggggtgct 1416 | ||||| |||||||| |||||||| ||||| |||||| |||||||||| | ||||||| Sbjct: 1640 agaaaggcggagcagacggaggcggcctacggggctgcactgctagcactcaagggtgct 1699 Query: 1417 a 1417 | Sbjct: 1700 a 1700 Score = 42.1 bits (21), Expect = 6.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1191 gtacttgcatggcatattggaatccatggcgcggatcgagg 1231 |||||||||||||||| |||| || || |||||||| |||| Sbjct: 1022 gtacttgcatggcatactggagtcgatcgcgcggattgagg 1062
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 133 bits (67), Expect = 2e-27 Identities = 226/279 (81%) Strand = Plus / Plus Query: 883 gtgacgtcgttgggttcaactcttgcaatcaagctcgtcagcagagtccgcgtggaagac 942 ||||||||||||||||||||||| || |||||||| | |||| | ||||||||| ||| Sbjct: 12711779 gtgacgtcgttgggttcaactctggcgatcaagctgctgagcaacgcccgcgtggacgac 12711838 Query: 943 gcaaggttcggcgtctacagccaccggatggacgaccagtggctcgtcggcggggcgtcc 1002 || |||||||||| |||||||| ||| |||||||| |||||| ||||| || |||||| Sbjct: 12711839 gcgcggttcggcgtgtacagccatcggctggacgacatgtggctggtcgggggcgcgtcc 12711898 Query: 1003 aacagcgggggtgtggtgctccggcaactcttcagcgacgaccagcttgtgacgctgagc 1062 |||| ||| || | || ||| |||| ||||||| |||||| ||||| || | || ||| Sbjct: 12711899 aacaccggcggcgccgtcctcaggcagctcttcaccgacgatcagctcgtcgctctcagc 12711958 Query: 1063 agggacatcgacccgtcatctccttcccctcatgactactatcctctgcccaagagcggc 1122 || ||||||||||| |||||||| || || ||||| |||||||| ||||| || Sbjct: 12711959 cacgagatcgacccgtcggttccttcccttctcgattactaccctctgcctaagagagga 12712018 Query: 1123 gagaggttccctgtctccgaccccgacatggagccaagg 1161 || ||||||||||||||||||||| ||||| ||||||| Sbjct: 12712019 gaaaggttccctgtctccgaccccaacatgatgccaagg 12712057 Score = 109 bits (55), Expect = 3e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 400 aacaatggagagcttcttgctggtcctttcctctacaacgagagcttccccgacgctctg 459 |||||||||| | |||||||||| || | |||||||||||||||||| | ||||| ||| Sbjct: 12710144 aacaatggagggattcttgctggcccatatctctacaacgagagcttcgcagacgcgctg 12710203 Query: 460 cccatggtcaaatcgatcgctcctgcgaatcacacggtgtgttccggttcgtccaccctg 519 || ||| ||||||| || || || ||||| |||||| |||| ||||||||||||||| Sbjct: 12710204 ccagcagtcgaatcgattgccccggcaaatcatacggtgcgttctggttcgtccaccctg 12710263 Query: 520 tgcaagctcgtgtcatggtggaa 542 |||||||| |||||||||||||| Sbjct: 12710264 tgcaagcttgtgtcatggtggaa 12710286 Score = 97.6 bits (49), Expect = 1e-16 Identities = 82/93 (88%) Strand = Plus / Plus Query: 568 gattcggcgatactgatgcaccaatcagactggctgctgtggcttttgcatgggaaatac 627 ||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| Sbjct: 12710315 gattcagcgatactgatgcaccagtcagactggttgctctggcttttgcatggagaatat 12710374 Query: 628 ggtgtttccgattacaacaatactctcaaggta 660 |||||||| ||||| ||||| ||||| |||||| Sbjct: 12710375 ggtgtttctgattataacaacactctgaaggta 12710407 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 274 aactgggcaggctcctggagagaagcactcttccaccttctcggcgacatcccgtccgtt 333 ||||||||| |||||||||||||||| |||||||| ||||| || | ||||| || | Sbjct: 12709908 aactgggcaagctcctggagagaagctctcttccatcttctgggtaatatcccagccatc 12709967 Query: 334 caccggccatcgatctcctccatctccattgatgggacttcagcaaccactctcatcat 392 |||||||||| ||||| ||||| || || || ||||||||||| |||||| ||||||| Sbjct: 12709968 taccggccatccatctcttccatttcaatcgacgggacttcagccaccactttcatcat 12710026 Score = 73.8 bits (37), Expect = 2e-09 Identities = 145/181 (80%) Strand = Plus / Plus Query: 1237 gggtataaactgctgaaggagctcggcgctacgccggtggaggaggtctttacgtcaggg 1296 ||||| || ||| |||||||||||||||| | |||||||||||| || ||| | || Sbjct: 12712832 gggtacaatctgttgaaggagctcggcgcgagcatggtggaggaggttttgacggcgggt 12712891 Query: 1297 ggaggtgcgcagaatgagaagtggacggcgatccgggagagagtgcttggggtgcctgtt 1356 ||||| || | ||| || |||||||||||||| ||| || |||||||| || || || Sbjct: 12712892 ggaggagctcggaacgataagtggacggcgataaggggaagggtgcttggcgttccggtg 12712951 Query: 1357 cggaaggcagagcagacagaggcggcgtacggagctgcattgctagcactgaggggtgct 1416 | ||||| |||||||| |||||||| ||||| |||||| |||||||||| | ||||||| Sbjct: 12712952 agaaaggcggagcagacggaggcggcctacggggctgcactgctagcactcaagggtgct 12713011 Query: 1417 a 1417 | Sbjct: 12713012 a 12713012 Score = 56.0 bits (28), Expect = 4e-04 Identities = 99/122 (81%), Gaps = 3/122 (2%) Strand = Plus / Plus Query: 667 gatccagagattgggtcatacccaagctggctcatgtcacagccatactcacacatgttg 726 ||||||||||||| || |||||||| ||| | |||||||||||||| | |||||||| Sbjct: 12711341 gatccagagattgactcgtacccaagttggttgatgtcacagccatatgcttacatgttg 12711400 Query: 727 ccttcttccatcagagcacctggagttcccattggcccaatcaaagaagatgtacgctca 786 || ||| | |||||||| |||| ||| |||||| ||||||| || ||||||||| || Sbjct: 12711401 ccgtct---gttagagcacccggagctccaattggctcaatcaaggaggatgtacgcgca 12711457 Query: 787 ca 788 || Sbjct: 12711458 ca 12711459 Score = 42.1 bits (21), Expect = 6.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1191 gtacttgcatggcatattggaatccatggcgcggatcgagg 1231 |||||||||||||||| |||| || || |||||||| |||| Sbjct: 12712334 gtacttgcatggcatactggagtcgatcgcgcggattgagg 12712374
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0492E07 Length = 143794 Score = 133 bits (67), Expect = 2e-27 Identities = 226/279 (81%) Strand = Plus / Plus Query: 883 gtgacgtcgttgggttcaactcttgcaatcaagctcgtcagcagagtccgcgtggaagac 942 ||||||||||||||||||||||| || |||||||| | |||| | ||||||||| ||| Sbjct: 86249 gtgacgtcgttgggttcaactctggcgatcaagctgctgagcaacgcccgcgtggacgac 86308 Query: 943 gcaaggttcggcgtctacagccaccggatggacgaccagtggctcgtcggcggggcgtcc 1002 || |||||||||| |||||||| ||| |||||||| |||||| ||||| || |||||| Sbjct: 86309 gcgcggttcggcgtgtacagccatcggctggacgacatgtggctggtcgggggcgcgtcc 86368 Query: 1003 aacagcgggggtgtggtgctccggcaactcttcagcgacgaccagcttgtgacgctgagc 1062 |||| ||| || | || ||| |||| ||||||| |||||| ||||| || | || ||| Sbjct: 86369 aacaccggcggcgccgtcctcaggcagctcttcaccgacgatcagctcgtcgctctcagc 86428 Query: 1063 agggacatcgacccgtcatctccttcccctcatgactactatcctctgcccaagagcggc 1122 || ||||||||||| |||||||| || || ||||| |||||||| ||||| || Sbjct: 86429 cacgagatcgacccgtcggttccttcccttctcgattactaccctctgcctaagagagga 86488 Query: 1123 gagaggttccctgtctccgaccccgacatggagccaagg 1161 || ||||||||||||||||||||| ||||| ||||||| Sbjct: 86489 gaaaggttccctgtctccgaccccaacatgatgccaagg 86527 Score = 109 bits (55), Expect = 3e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 400 aacaatggagagcttcttgctggtcctttcctctacaacgagagcttccccgacgctctg 459 |||||||||| | |||||||||| || | |||||||||||||||||| | ||||| ||| Sbjct: 84614 aacaatggagggattcttgctggcccatatctctacaacgagagcttcgcagacgcgctg 84673 Query: 460 cccatggtcaaatcgatcgctcctgcgaatcacacggtgtgttccggttcgtccaccctg 519 || ||| ||||||| || || || ||||| |||||| |||| ||||||||||||||| Sbjct: 84674 ccagcagtcgaatcgattgccccggcaaatcatacggtgcgttctggttcgtccaccctg 84733 Query: 520 tgcaagctcgtgtcatggtggaa 542 |||||||| |||||||||||||| Sbjct: 84734 tgcaagcttgtgtcatggtggaa 84756 Score = 97.6 bits (49), Expect = 1e-16 Identities = 82/93 (88%) Strand = Plus / Plus Query: 568 gattcggcgatactgatgcaccaatcagactggctgctgtggcttttgcatgggaaatac 627 ||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| Sbjct: 84785 gattcagcgatactgatgcaccagtcagactggttgctctggcttttgcatggagaatat 84844 Query: 628 ggtgtttccgattacaacaatactctcaaggta 660 |||||||| ||||| ||||| ||||| |||||| Sbjct: 84845 ggtgtttctgattataacaacactctgaaggta 84877 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 274 aactgggcaggctcctggagagaagcactcttccaccttctcggcgacatcccgtccgtt 333 ||||||||| |||||||||||||||| |||||||| ||||| || | ||||| || | Sbjct: 84378 aactgggcaagctcctggagagaagctctcttccatcttctgggtaatatcccagccatc 84437 Query: 334 caccggccatcgatctcctccatctccattgatgggacttcagcaaccactctcatcat 392 |||||||||| ||||| ||||| || || || ||||||||||| |||||| ||||||| Sbjct: 84438 taccggccatccatctcttccatttcaatcgacgggacttcagccaccactttcatcat 84496 Score = 73.8 bits (37), Expect = 2e-09 Identities = 145/181 (80%) Strand = Plus / Plus Query: 1237 gggtataaactgctgaaggagctcggcgctacgccggtggaggaggtctttacgtcaggg 1296 ||||| || ||| |||||||||||||||| | |||||||||||| || ||| | || Sbjct: 87302 gggtacaatctgttgaaggagctcggcgcgagcatggtggaggaggttttgacggcgggt 87361 Query: 1297 ggaggtgcgcagaatgagaagtggacggcgatccgggagagagtgcttggggtgcctgtt 1356 ||||| || | ||| || |||||||||||||| ||| || |||||||| || || || Sbjct: 87362 ggaggagctcggaacgataagtggacggcgataaggggaagggtgcttggcgttccggtg 87421 Query: 1357 cggaaggcagagcagacagaggcggcgtacggagctgcattgctagcactgaggggtgct 1416 | ||||| |||||||| |||||||| ||||| |||||| |||||||||| | ||||||| Sbjct: 87422 agaaaggcggagcagacggaggcggcctacggggctgcactgctagcactcaagggtgct 87481 Query: 1417 a 1417 | Sbjct: 87482 a 87482 Score = 56.0 bits (28), Expect = 4e-04 Identities = 99/122 (81%), Gaps = 3/122 (2%) Strand = Plus / Plus Query: 667 gatccagagattgggtcatacccaagctggctcatgtcacagccatactcacacatgttg 726 ||||||||||||| || |||||||| ||| | |||||||||||||| | |||||||| Sbjct: 85811 gatccagagattgactcgtacccaagttggttgatgtcacagccatatgcttacatgttg 85870 Query: 727 ccttcttccatcagagcacctggagttcccattggcccaatcaaagaagatgtacgctca 786 || ||| | |||||||| |||| ||| |||||| ||||||| || ||||||||| || Sbjct: 85871 ccgtct---gttagagcacccggagctccaattggctcaatcaaggaggatgtacgcgca 85927 Query: 787 ca 788 || Sbjct: 85928 ca 85929 Score = 42.1 bits (21), Expect = 6.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1191 gtacttgcatggcatattggaatccatggcgcggatcgagg 1231 |||||||||||||||| |||| || || |||||||| |||| Sbjct: 86804 gtacttgcatggcatactggagtcgatcgcgcggattgagg 86844
>gb|AC155346.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH081N08, complete sequence Length = 56991 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Minus Query: 347 tctcctccatctccattgatgggacttcagcaaccactctcatc 390 |||| ||||| ||| ||||||||||||| ||||| ||||||||| Sbjct: 37531 tctcttccatttcccttgatgggacttctgcaactactctcatc 37488
>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence Length = 171301 Score = 46.1 bits (23), Expect = 0.41 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 ctaaattttatccattcattttccact 209 ||||||||||||||||||| ||||||| Sbjct: 58818 ctaaattttatccattcatcttccact 58844
>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete sequence Length = 157927 Score = 46.1 bits (23), Expect = 0.41 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 ctaaattttatccattcattttccact 209 ||||||||||||||||||| ||||||| Sbjct: 15147 ctaaattttatccattcatcttccact 15173
>dbj|AP005791.2| Homo sapiens genomic DNA, chromosome 8q22, clone: KB1357H4, complete sequence Length = 160208 Score = 46.1 bits (23), Expect = 0.41 Identities = 26/27 (96%) Strand = Plus / Plus Query: 183 ctaaattttatccattcattttccact 209 ||||||||||||||||||| ||||||| Sbjct: 158582 ctaaattttatccattcatcttccact 158608
>emb|AL591410.8| Mouse DNA sequence from clone RP23-96I2 on chromosome 11 Contains part of the Myo1d gene for myosin ID, complete sequence Length = 231675 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 412 cttcttgctggtcctttcctct 433 |||||||||||||||||||||| Sbjct: 129873 cttcttgctggtcctttcctct 129852
>gb|CP000425.1| Lactococcus lactis subsp. cremoris SK11, complete genome Length = 2438589 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 752 ttcccattggcccaatcaaag 772 ||||||||||||||||||||| Sbjct: 64349 ttcccattggcccaatcaaag 64369
>gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence Length = 214480 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 745 cctggagttcccattggcccaatca 769 |||||||||||||||||| |||||| Sbjct: 24003 cctggagttcccattggcacaatca 24027
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 390 cattgatagaaacaatggagagctt 414 ||||||||| ||||||||||||||| Sbjct: 9884101 cattgatagcaacaatggagagctt 9884077
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1513 aaaaaagcctacaaaaatagc 1533 ||||||||||||||||||||| Sbjct: 8211629 aaaaaagcctacaaaaatagc 8211649
>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence Length = 179544 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1580 gatgttctctggtcttccaag 1600 ||||||||||||||||||||| Sbjct: 101712 gatgttctctggtcttccaag 101692
>dbj|AP005724.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017I18 Length = 146304 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 390 cattgatagaaacaatggagagctt 414 ||||||||| ||||||||||||||| Sbjct: 39548 cattgatagcaacaatggagagctt 39524
>dbj|AP005701.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0095I04 Length = 138924 Score = 42.1 bits (21), Expect = 6.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 390 cattgatagaaacaatggagagctt 414 ||||||||| ||||||||||||||| Sbjct: 66788 cattgatagcaacaatggagagctt 66764
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1513 aaaaaagcctacaaaaatagc 1533 ||||||||||||||||||||| Sbjct: 43775 aaaaaagcctacaaaaatagc 43795
>emb|BX649439.8| Zebrafish DNA sequence from clone DKEY-21A8 in linkage group 2, complete sequence Length = 146298 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 attatattttgatttatctgg 122 ||||||||||||||||||||| Sbjct: 3351 attatattttgatttatctgg 3331
>dbj|AP004959.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT21I12, TM0136, complete sequence Length = 81332 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1150 atggagccaaggctggagcct 1170 ||||||||||||||||||||| Sbjct: 65080 atggagccaaggctggagcct 65060
>gb|U79490.1|LLU79490 Lactococcus lactis cremoris putative O-acetylhomoserine sulfhydrylase (metB) gene, partial cds Length = 711 Score = 42.1 bits (21), Expect = 6.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 752 ttcccattggcccaatcaaag 772 ||||||||||||||||||||| Sbjct: 201 ttcccattggcccaatcaaag 181 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 284,757,342 Number of extensions: 14569432 Number of successful extensions: 274796 Number of sequences better than 10.0: 20 Number of HSP's gapped: 274788 Number of HSP's successfully gapped: 46 Length of query: 1671 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1648 Effective length of database: 18,503,978,556 Effective search space: 30494556660288 Effective search space used: 30494556660288 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
