Clone Name | FLbaf95g07 |
---|---|
Clone Library Name | barley_pub |
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 115 bits (58), Expect = 7e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 946 atccaaagcaggatacatagctcatatatagcagtagtaacaaggaagagccctgatttc 1005 ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 7238 atccaaagcaggacacatagctcatatatagcactagtaacaaggaatggccctgatttt 7179 Query: 1006 cactgagaaactgatgtaacaa 1027 || ||||||||||||||||||| Sbjct: 7178 cattgagaaactgatgtaacaa 7157 Score = 65.9 bits (33), Expect = 6e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 1031 ccttgtctcctccctaatgagccaaacatgtttgacattgcagcgcagaatctgataaca 1090 ||||| |||||| ||| ||||| ||||||| ||||||||||||| ||||||||| ||| | Sbjct: 3086 ccttgcctcctctctagtgagcaaaacatgcttgacattgcagcccagaatctgctaata 3027 Query: 1091 gtcgc 1095 ||||| Sbjct: 3026 gtcgc 3022
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 81.8 bits (41), Expect = 1e-11 Identities = 59/65 (90%) Strand = Plus / Minus Query: 964 agctcatatatagcagtagtaacaaggaagagccctgatttccactgagaaactgatgta 1023 ||||||||||||||||||||||||||||| |||| ||||| || ||||||||||||||| Sbjct: 9707 agctcatatatagcagtagtaacaaggaatggcccagattttcattgagaaactgatgta 9648 Query: 1024 acaac 1028 |||| Sbjct: 9647 ccaac 9643 Score = 61.9 bits (31), Expect = 9e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 577 tttcatcgtgaattcgtcaaatgcagtctttaatttacagcaacata 623 ||||||| ||||||| || ||||||||||||||||||| |||||||| Sbjct: 34205 tttcatcatgaattcatcgaatgcagtctttaatttacggcaacata 34159
>gb|U78762.1|TAU78762 Triticum aestivum receptor-like kinase ARK1AS (ARK1AS) gene, complete cds Length = 2744 Score = 63.9 bits (32), Expect = 2e-06 Identities = 53/59 (89%), Gaps = 2/59 (3%) Strand = Plus / Plus Query: 930 atcttacttgtctttgatccaaagcaggatacatagctcatatatagcagtagtaacaa 988 |||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||||| Sbjct: 2610 atcttacttgtcttggatccaaagcagg--acaaagctcatatttaacagtagtaacaa 2666
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 52.0 bits (26), Expect = 0.009 Identities = 35/38 (92%) Strand = Plus / Plus Query: 576 atttcatcgtgaattcgtcaaatgcagtctttaattta 613 |||| ||||||||||| |||||||||||| |||||||| Sbjct: 15250 attttatcgtgaattcatcaaatgcagtcattaattta 15287
>gb|AY580278.1| Saccoglossus kowalevskii methionine adenosyltransferase mRNA, partial cds Length = 957 Score = 50.1 bits (25), Expect = 0.036 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1505 agattgctgctggtgttcatgagaa 1529 ||||||||||||||||||||||||| Sbjct: 251 agattgctgctggtgttcatgagaa 275
>gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, complete sequence Length = 182522 Score = 50.1 bits (25), Expect = 0.036 Identities = 25/25 (100%) Strand = Plus / Plus Query: 2229 tgatatgctattgaaatgaaatata 2253 ||||||||||||||||||||||||| Sbjct: 157279 tgatatgctattgaaatgaaatata 157303
>emb|AL024458.1|HS344I7 Human DNA sequence from clone RP3-344I7 on chromosome Xp11.21-11.3 Contains a keratin 8 (KRT8) pseudogene, complete sequence Length = 99848 Score = 46.1 bits (23), Expect = 0.56 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2131 agtattctgttgtgtacatgtaaaatt 2157 |||||||||||||||||||||| |||| Sbjct: 15307 agtattctgttgtgtacatgtacaatt 15281
>gb|AC115967.11| Mus musculus chromosome 8, clone RP24-72G22, complete sequence Length = 221435 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2131 agtattctgttgtgtacatgta 2152 |||||||||||||||||||||| Sbjct: 42550 agtattctgttgtgtacatgta 42571
>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence Length = 193024 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 725 agctagaaatgccaaaggaagt 746 |||||||||||||||||||||| Sbjct: 131444 agctagaaatgccaaaggaagt 131465
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11 Length = 344249 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1152 tcaggtggatgcctttgccttg 1173 |||||||||||||||||||||| Sbjct: 296080 tcaggtggatgcctttgccttg 296059
>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part of the gene for a novel protein (likely ortholog to homo sapiens FLJ38335), complete sequence Length = 198148 Score = 44.1 bits (22), Expect = 2.2 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2240 tgaaatgaaatatacattttatttgc 2265 |||||||||||| ||||||||||||| Sbjct: 151624 tgaaatgaaataaacattttatttgc 151599
>emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in linkage group 15, complete sequence Length = 185865 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2242 aaatgaaatatacattttattt 2263 |||||||||||||||||||||| Sbjct: 108793 aaatgaaatatacattttattt 108814
>gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, complete sequence Length = 146712 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2131 agtattctgttgtgtacatgta 2152 |||||||||||||||||||||| Sbjct: 136087 agtattctgttgtgtacatgta 136108
>gb|AY105027.1| Zea mays PCO081602 mRNA sequence Length = 1570 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 868 cttctttttcttctttacagct 889 |||||||||||||||||||||| Sbjct: 443 cttctttttcttctttacagct 422
>dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2317D23, complete sequence Length = 78200 Score = 44.1 bits (22), Expect = 2.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 725 agctagaaatgccaaaggaagt 746 |||||||||||||||||||||| Sbjct: 34443 agctagaaatgccaaaggaagt 34464
>ref|XM_001024230.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00459220) mRNA, complete cds Length = 2253 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2145 tacatgtaaaattatgttgat 2165 ||||||||||||||||||||| Sbjct: 487 tacatgtaaaattatgttgat 507
>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence Length = 202878 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 868 cttctttttcttctttacagc 888 ||||||||||||||||||||| Sbjct: 17063 cttctttttcttctttacagc 17043
>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence Length = 136964 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2128 agaagtattctgttgtgtacatgta 2152 ||||||||||||||||||| ||||| Sbjct: 7619 agaagtattctgttgtgtaaatgta 7643
>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete sequence Length = 214627 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 931 tcttacttgtctttgatccaa 951 ||||||||||||||||||||| Sbjct: 169888 tcttacttgtctttgatccaa 169908
>gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, complete sequence Length = 166843 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1959 gtgtaggacaattgaagtgga 1979 ||||||||||||||||||||| Sbjct: 24346 gtgtaggacaattgaagtgga 24366
>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence Length = 257757 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1111 tatacatgtgaaaaaatatgt 1131 ||||||||||||||||||||| Sbjct: 171139 tatacatgtgaaaaaatatgt 171159
>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence Length = 200657 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 atcatcaaaccccagcatgct 478 ||||||||||||||||||||| Sbjct: 138251 atcatcaaaccccagcatgct 138231
>gb|AC099605.9| Mus musculus chromosome 18, clone RP23-349G24, complete sequence Length = 203175 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 ggtgaggcatccgtcttggac 127 ||||||||||||||||||||| Sbjct: 72229 ggtgaggcatccgtcttggac 72249
>gb|AC163758.3| Pan troglodytes BAC clone CH251-221N15 from chromosome 7, complete sequence Length = 157318 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1693 attagatgcctatctcttccggtca 1717 ||||||||||||||||| ||||||| Sbjct: 154474 attagatgcctatctctcccggtca 154450
>emb|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F11 on chromosome 20 Contains the 5' end of the C20orf194 gene for chromosome 20 open reading frame 194, the UBE2V1P1 gene for ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 and a CpG island, complete sequence Length = 92969 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2242 aaatgaaatatacattttatt 2262 ||||||||||||||||||||| Sbjct: 88452 aaatgaaatatacattttatt 88432
>gb|AC160942.1| Pan troglodytes BAC clone CH251-443J9 from chromosome unknown, complete sequence Length = 182340 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1693 attagatgcctatctcttccggtca 1717 ||||||||||||||||| ||||||| Sbjct: 99424 attagatgcctatctctcccggtca 99448
>gb|AC073928.5| Homo sapiens BAC clone RP11-745P9 from 2, complete sequence Length = 138943 Score = 42.1 bits (21), Expect = 8.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 2114 gcaggtgtttttgcagaagtattctgttgtgta 2146 |||| ||| |||||||||||||||| ||||||| Sbjct: 122807 gcagatgtctttgcagaagtattcttttgtgta 122839
>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence Length = 181952 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1961 gtaggacaattgaagtggaggtgtg 1985 ||||||||| ||||||||||||||| Sbjct: 122681 gtaggacaagtgaagtggaggtgtg 122657
>ref|XM_958658.1| Neurospora crassa OR74A hypothetical protein (NCU07472.1) partial mRNA Length = 1731 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 acggggatcatcaaaccccag 472 ||||||||||||||||||||| Sbjct: 884 acggggatcatcaaaccccag 864
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2052 agcatattgtgcagaggaagaggat 2076 ||||||||||||||| ||||||||| Sbjct: 1796576 agcatattgtgcagaagaagaggat 1796600
>gb|U76215.1|TAU76215 Triticum aestivum NBS-LRR type protein pseudogene, complete sequence Length = 3696 Score = 42.1 bits (21), Expect = 8.7 Identities = 39/44 (88%), Gaps = 2/44 (4%) Strand = Plus / Minus Query: 945 gatccaaagcaggatacatagctcatatatagcagtagtaacaa 988 |||||||||||||| || ||||||||| || |||||||||||| Sbjct: 3695 gatccaaagcagga--caaagctcatatttaacagtagtaacaa 3654
>emb|BX293544.7| Mouse DNA sequence from clone RP23-109C9 on chromosome 2, complete sequence Length = 97505 Score = 42.1 bits (21), Expect = 8.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1007 actgagaaactgatgtaacaa 1027 ||||||||||||||||||||| Sbjct: 61174 actgagaaactgatgtaacaa 61154
>ref|XM_729899.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000502.00.0) partial mRNA Length = 504 Score = 42.1 bits (21), Expect = 8.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2237 tattgaaatgaaatatacattttat 2261 ||||||||||||||| ||||||||| Sbjct: 162 tattgaaatgaaatacacattttat 186 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 424,105,906 Number of extensions: 22656940 Number of successful extensions: 135324 Number of sequences better than 10.0: 33 Number of HSP's gapped: 135323 Number of HSP's successfully gapped: 35 Length of query: 2280 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2257 Effective length of database: 18,503,978,556 Effective search space: 41763479600892 Effective search space used: 41763479600892 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)