ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf95g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 115 7e-22
2gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (T... 82 1e-11
3gb|U78762.1|TAU78762 Triticum aestivum receptor-like kinase ARK1... 64 2e-06
4gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 52 0.009
5gb|AY580278.1| Saccoglossus kowalevskii methionine adenosyltrans... 50 0.036
6gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, co... 50 0.036
7emb|AL024458.1|HS344I7 Human DNA sequence from clone RP3-344I7 o... 46 0.56
8gb|AC115967.11| Mus musculus chromosome 8, clone RP24-72G22, com... 44 2.2
9gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, comple... 44 2.2
10emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, stra... 44 2.2
11emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on ch... 44 2.2
12emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in... 44 2.2
13gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, co... 44 2.2
14gb|AY105027.1| Zea mays PCO081602 mRNA sequence 44 2.2
15dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 44 2.2
16ref|XM_001024230.1| Tetrahymena thermophila SB210 hypothetical p... 42 8.7
17gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, com... 42 8.7
18gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, com... 42 8.7
19gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 8.7
20gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, com... 42 8.7
21gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2... 42 8.7
22gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome... 42 8.7
23gb|AC099605.9| Mus musculus chromosome 18, clone RP23-349G24, co... 42 8.7
24gb|AC163758.3| Pan troglodytes BAC clone CH251-221N15 from chrom... 42 8.7
25emb|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F... 42 8.7
26gb|AC160942.1| Pan troglodytes BAC clone CH251-443J9 from chromo... 42 8.7
27gb|AC073928.5| Homo sapiens BAC clone RP11-745P9 from 2, complet... 42 8.7
28gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complet... 42 8.7
29ref|XM_958658.1| Neurospora crassa OR74A hypothetical protein (N... 42 8.7
30gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 42 8.7
31gb|U76215.1|TAU76215 Triticum aestivum NBS-LRR type protein pseu... 42 8.7
32emb|BX293544.7| Mouse DNA sequence from clone RP23-109C9 on chro... 42 8.7
33ref|XM_729899.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 8.7

>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1),
            and LRK19 (Lrk19) genes, complete cds
          Length = 35872
 Score =  115 bits (58), Expect = 7e-22
 Identities = 76/82 (92%)
 Strand = Plus / Minus

                                                                        
Query: 946  atccaaagcaggatacatagctcatatatagcagtagtaacaaggaagagccctgatttc 1005
            ||||||||||||| ||||||||||||||||||| |||||||||||||  |||||||||| 
Sbjct: 7238 atccaaagcaggacacatagctcatatatagcactagtaacaaggaatggccctgatttt 7179

                                  
Query: 1006 cactgagaaactgatgtaacaa 1027
            || |||||||||||||||||||
Sbjct: 7178 cattgagaaactgatgtaacaa 7157



 Score = 65.9 bits (33), Expect = 6e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1031 ccttgtctcctccctaatgagccaaacatgtttgacattgcagcgcagaatctgataaca 1090
            ||||| |||||| ||| ||||| ||||||| ||||||||||||| ||||||||| ||| |
Sbjct: 3086 ccttgcctcctctctagtgagcaaaacatgcttgacattgcagcccagaatctgctaata 3027

                 
Query: 1091 gtcgc 1095
            |||||
Sbjct: 3026 gtcgc 3022



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>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14)
            genes, complete cds; and unknown gene
          Length = 43606

 Score = 81.8 bits (41), Expect = 1e-11
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                        
Query: 964  agctcatatatagcagtagtaacaaggaagagccctgatttccactgagaaactgatgta 1023
            |||||||||||||||||||||||||||||  |||| ||||| || |||||||||||||||
Sbjct: 9707 agctcatatatagcagtagtaacaaggaatggcccagattttcattgagaaactgatgta 9648

                 
Query: 1024 acaac 1028
             ||||
Sbjct: 9647 ccaac 9643



 Score = 61.9 bits (31), Expect = 9e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 577   tttcatcgtgaattcgtcaaatgcagtctttaatttacagcaacata 623
             ||||||| ||||||| || ||||||||||||||||||| ||||||||
Sbjct: 34205 tttcatcatgaattcatcgaatgcagtctttaatttacggcaacata 34159



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>gb|U78762.1|TAU78762 Triticum aestivum receptor-like kinase ARK1AS (ARK1AS) gene, complete
            cds
          Length = 2744

 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 2/59 (3%)
 Strand = Plus / Plus

                                                                       
Query: 930  atcttacttgtctttgatccaaagcaggatacatagctcatatatagcagtagtaacaa 988
            |||||||||||||| |||||||||||||  ||| ||||||||| || ||||||||||||
Sbjct: 2610 atcttacttgtcttggatccaaagcagg--acaaagctcatatttaacagtagtaacaa 2666



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>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 52.0 bits (26), Expect = 0.009
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 576   atttcatcgtgaattcgtcaaatgcagtctttaattta 613
             |||| ||||||||||| |||||||||||| ||||||||
Sbjct: 15250 attttatcgtgaattcatcaaatgcagtcattaattta 15287



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>gb|AY580278.1| Saccoglossus kowalevskii methionine adenosyltransferase mRNA, partial
            cds
          Length = 957

 Score = 50.1 bits (25), Expect = 0.036
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 1505 agattgctgctggtgttcatgagaa 1529
            |||||||||||||||||||||||||
Sbjct: 251  agattgctgctggtgttcatgagaa 275



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>gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, complete sequence
          Length = 182522

 Score = 50.1 bits (25), Expect = 0.036
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 2229   tgatatgctattgaaatgaaatata 2253
              |||||||||||||||||||||||||
Sbjct: 157279 tgatatgctattgaaatgaaatata 157303



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>emb|AL024458.1|HS344I7 Human DNA sequence from clone RP3-344I7 on chromosome Xp11.21-11.3
             Contains a keratin 8 (KRT8) pseudogene, complete sequence
          Length = 99848

 Score = 46.1 bits (23), Expect = 0.56
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 2131  agtattctgttgtgtacatgtaaaatt 2157
             |||||||||||||||||||||| ||||
Sbjct: 15307 agtattctgttgtgtacatgtacaatt 15281



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>gb|AC115967.11| Mus musculus chromosome 8, clone RP24-72G22, complete sequence
          Length = 221435

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2131  agtattctgttgtgtacatgta 2152
             ||||||||||||||||||||||
Sbjct: 42550 agtattctgttgtgtacatgta 42571



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>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 725    agctagaaatgccaaaggaagt 746
              ||||||||||||||||||||||
Sbjct: 131444 agctagaaatgccaaaggaagt 131465



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>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
          Length = 344249

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1152   tcaggtggatgcctttgccttg 1173
              ||||||||||||||||||||||
Sbjct: 296080 tcaggtggatgcctttgccttg 296059



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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part
              of the gene for a novel protein (likely ortholog to homo
              sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 2240   tgaaatgaaatatacattttatttgc 2265
              |||||||||||| |||||||||||||
Sbjct: 151624 tgaaatgaaataaacattttatttgc 151599



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>emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in linkage group 15,
              complete sequence
          Length = 185865

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2242   aaatgaaatatacattttattt 2263
              ||||||||||||||||||||||
Sbjct: 108793 aaatgaaatatacattttattt 108814



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>gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, complete sequence
          Length = 146712

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2131   agtattctgttgtgtacatgta 2152
              ||||||||||||||||||||||
Sbjct: 136087 agtattctgttgtgtacatgta 136108



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>gb|AY105027.1| Zea mays PCO081602 mRNA sequence
          Length = 1570

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 868 cttctttttcttctttacagct 889
           ||||||||||||||||||||||
Sbjct: 443 cttctttttcttctttacagct 422



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>dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2317D23, complete
             sequence
          Length = 78200

 Score = 44.1 bits (22), Expect = 2.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 725   agctagaaatgccaaaggaagt 746
             ||||||||||||||||||||||
Sbjct: 34443 agctagaaatgccaaaggaagt 34464



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>ref|XM_001024230.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00459220)
            mRNA, complete cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2145 tacatgtaaaattatgttgat 2165
            |||||||||||||||||||||
Sbjct: 487  tacatgtaaaattatgttgat 507



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>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence
          Length = 202878

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 868   cttctttttcttctttacagc 888
             |||||||||||||||||||||
Sbjct: 17063 cttctttttcttctttacagc 17043



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>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence
          Length = 136964

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 2128 agaagtattctgttgtgtacatgta 2152
            ||||||||||||||||||| |||||
Sbjct: 7619 agaagtattctgttgtgtaaatgta 7643



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>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete
              sequence
          Length = 214627

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 931    tcttacttgtctttgatccaa 951
              |||||||||||||||||||||
Sbjct: 169888 tcttacttgtctttgatccaa 169908



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>gb|AC090821.13| Homo sapiens chromosome 8, clone CTD-2309H9, complete sequence
          Length = 166843

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1959  gtgtaggacaattgaagtgga 1979
             |||||||||||||||||||||
Sbjct: 24346 gtgtaggacaattgaagtgga 24366



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>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete
              sequence
          Length = 257757

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1111   tatacatgtgaaaaaatatgt 1131
              |||||||||||||||||||||
Sbjct: 171139 tatacatgtgaaaaaatatgt 171159



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>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence
          Length = 200657

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 458    atcatcaaaccccagcatgct 478
              |||||||||||||||||||||
Sbjct: 138251 atcatcaaaccccagcatgct 138231



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>gb|AC099605.9| Mus musculus chromosome 18, clone RP23-349G24, complete sequence
          Length = 203175

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   ggtgaggcatccgtcttggac 127
             |||||||||||||||||||||
Sbjct: 72229 ggtgaggcatccgtcttggac 72249



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>gb|AC163758.3| Pan troglodytes BAC clone CH251-221N15 from chromosome 7, complete
              sequence
          Length = 157318

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1693   attagatgcctatctcttccggtca 1717
              ||||||||||||||||| |||||||
Sbjct: 154474 attagatgcctatctctcccggtca 154450



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>emb|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F11 on chromosome 20 Contains the
             5' end of the C20orf194 gene for chromosome 20 open
             reading frame 194, the UBE2V1P1 gene for
             ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 and
             a CpG island, complete sequence
          Length = 92969

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2242  aaatgaaatatacattttatt 2262
             |||||||||||||||||||||
Sbjct: 88452 aaatgaaatatacattttatt 88432



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>gb|AC160942.1| Pan troglodytes BAC clone CH251-443J9 from chromosome unknown, complete
             sequence
          Length = 182340

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1693  attagatgcctatctcttccggtca 1717
             ||||||||||||||||| |||||||
Sbjct: 99424 attagatgcctatctctcccggtca 99448



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>gb|AC073928.5| Homo sapiens BAC clone RP11-745P9 from 2, complete sequence
          Length = 138943

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 2114   gcaggtgtttttgcagaagtattctgttgtgta 2146
              |||| ||| |||||||||||||||| |||||||
Sbjct: 122807 gcagatgtctttgcagaagtattcttttgtgta 122839



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>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence
          Length = 181952

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1961   gtaggacaattgaagtggaggtgtg 1985
              ||||||||| |||||||||||||||
Sbjct: 122681 gtaggacaagtgaagtggaggtgtg 122657



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>ref|XM_958658.1| Neurospora crassa OR74A hypothetical protein (NCU07472.1) partial
           mRNA
          Length = 1731

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 452 acggggatcatcaaaccccag 472
           |||||||||||||||||||||
Sbjct: 884 acggggatcatcaaaccccag 864



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 2052    agcatattgtgcagaggaagaggat 2076
               ||||||||||||||| |||||||||
Sbjct: 1796576 agcatattgtgcagaagaagaggat 1796600



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>gb|U76215.1|TAU76215 Triticum aestivum NBS-LRR type protein pseudogene, complete sequence
          Length = 3696

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 39/44 (88%), Gaps = 2/44 (4%)
 Strand = Plus / Minus

                                                        
Query: 945  gatccaaagcaggatacatagctcatatatagcagtagtaacaa 988
            ||||||||||||||  || ||||||||| || ||||||||||||
Sbjct: 3695 gatccaaagcagga--caaagctcatatttaacagtagtaacaa 3654



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>emb|BX293544.7| Mouse DNA sequence from clone RP23-109C9 on chromosome 2, complete
             sequence
          Length = 97505

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1007  actgagaaactgatgtaacaa 1027
             |||||||||||||||||||||
Sbjct: 61174 actgagaaactgatgtaacaa 61154



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>ref|XM_729899.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000502.00.0)
            partial mRNA
          Length = 504

 Score = 42.1 bits (21), Expect = 8.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 2237 tattgaaatgaaatatacattttat 2261
            ||||||||||||||| |||||||||
Sbjct: 162  tattgaaatgaaatacacattttat 186


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 424,105,906
Number of extensions: 22656940
Number of successful extensions: 135324
Number of sequences better than 10.0: 33
Number of HSP's gapped: 135323
Number of HSP's successfully gapped: 35
Length of query: 2280
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2257
Effective length of database: 18,503,978,556
Effective search space: 41763479600892
Effective search space used: 41763479600892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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