>LOC_Os03g57420:12003.t05009:unspliced-genomic ML domain protein, putative, expressed|
Length = 3043
Score = 101 bits (215), Expect(3) = 3e-47
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 245 DKTITKGKLVVDVWYFFFHVDSETHDFCAGTPCPATGEFVLTSEQTLPSFTPPGS 409
DK+ITKGKLV+DV YFFFHV SE+H+ C T CP TGEFVL EQTLPS TPP S
Sbjct: 1981 DKSITKGKLVIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLPSITPPVS 2145
Score = 71.6 bits (150), Expect(3) = 3e-47
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = +2 / +2
Query: 125 VDFEYCNKGRHYPVKVSGVEISPDPVVRGKPATFKISASTDK 250
V F +GR YPVKVSGVEI PDPVV G+PATFKISAST K
Sbjct: 293 VGFVAAGQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTGK 418
Score = 61.1 bits (127), Expect(3) = 3e-47
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2 / +1
Query: 404 GSYSLQMKLLGDKKEELTCISFGFNIGFIAPVATI* 511
GSY+L M+LL D +ELTCISFGF+IGFI+P+A I*
Sbjct: 2296 GSYTLTMRLLDDGNKELTCISFGFSIGFISPLALI* 2403
Score = 88.1 bits (186), Expect(3) = 1e-32
Identities = 38/53 (71%), Positives = 43/53 (81%)
Frame = -1 / -3
Query: 402 GGVKDGRVCSLVSTNSPVAGQGVPAQKS*VSESTWKKKYHTSTTSFPLVMVLS 244
GGV DG+VCS STNSPV GQ V +Q+ *+SE TWKKKY TS TSFPLVM+LS
Sbjct: 2138 GGVIDGKVCSCASTNSPVTGQEVSSQRL*LSEWTWKKKYLTSITSFPLVMLLS 1980
Score = 62.5 bits (130), Expect(3) = 1e-32
Identities = 28/34 (82%), Positives = 29/34 (85%)
Frame = -1 / -2
Query: 249 LSVEAEILKVAGLPRTTGSGEISTPLTFTG*WRP 148
L V+AEILKVAG P TTGSG ISTPLTFTG* RP
Sbjct: 417 LPVDAEILKVAGCPLTTGSGTISTPLTFTG*SRP 316
Score = 34.1 bits (68), Expect(3) = 1e-32
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1 / -3
Query: 501 ATGAMNPMLKPKEMQVXXXXXXXXXFIWRL*EP 403
A G MNPML P EMQV + R+*EP
Sbjct: 2393 ARGEMNPMLNPNEMQVSSLLPSSSSLMVRV*EP 2295
Score = 57.0 bits (118), Expect(3) = 3e-11
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -3 / -2
Query: 403 WWGERWQGLFAG*HEFAGCGTGSPSTEVVSF*IDVEEEVPHIYHQLP 263
WWG+ W LF HEF T+VV+F*+D+E+EV IYH+LP
Sbjct: 2139 WWGD*W*SLFVRKHEFTSYWARGLLTKVVTF*MDMEKEVLDIYHELP 1999
Score = 30.4 bits (60), Expect(3) = 3e-11
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3 / -2
Query: 508 DSGDRRDEPDVEAEGDAGQLLFLVPQQLHLETVR 407
D R +EPD E + DAGQ L V H E+VR
Sbjct: 2400 DESKR*NEPDAEPKRDAGQFLVAVI**PHGESVR 2299
Score = 24.4 bits (47), Expect(3) = 3e-11
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 181 HAAHLHRIVAAL 146
H+AHLHRI+ L
Sbjct: 349 HSAHLHRIIPPL 314
Score = 49.2 bits (101), Expect(2) = 2e-06
Identities = 28/52 (53%), Positives = 29/52 (55%)
Frame = +1 / +3
Query: 247 *NHHQREAGGRCVVLLLPRRFRNSRLLCWDSLSRNRRIRANQRTDPAIFHPT 402
* HH EA RC VLL P FR S+ L D L N IRA RTD I HPT
Sbjct: 1983 *KHH*GEARDRCQVLLFPCPFRKSQPL*GDLLPSNW*IRACARTDFTINHPT 2138
Score = 26.3 bits (51), Expect(2) = 2e-06
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 214 ARHLQDLRLHG* 249
A HLQDLR+HG*
Sbjct: 382 AGHLQDLRIHG* 417
Score = 38.6 bits (78), Expect = 0.043
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = -2 / -1
Query: 404 LVG*KMAGSVXXXXXXXXXXXRESQHRSREFLNRRGRRSTTHLPPASLW*WFY 246
LVG* M SV + S H+ +FLN G+RST HL AS * FY
Sbjct: 2140 LVG*LMVKSVRAQARIHQLLGKRSPHKGCDFLNGHGKRST*HLSRASP**CFY 1982
>LOC_Os07g06590:12007.t00538:unspliced-genomic ML domain protein, putative, expressed|
Length = 3187
Score = 91.3 bits (193), Expect(4) = 4e-44
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +2 / +2
Query: 239 STDKTITKGKLVVDVWYFFFHVDSETHDFCAGTPCPATGEFVLTSEQTLPSFTPPGS 409
+ DKTI KGKLV+DV YFFF+V SET + C T CPA+G+F++ +QTLPS+TPP S
Sbjct: 2384 AADKTIGKGKLVIDVKYFFFYVHSETRELCDVTSCPASGDFLVAHQQTLPSYTPPVS 2554
Score = 69.3 bits (145), Expect(4) = 4e-44
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +2 / +2
Query: 143 NKGRHYPVKVSGVEISPDPVVRGKPATFKISAST 244
+KG+ YPVKVSGVEI PDPV RG+PATFKISAST
Sbjct: 323 DKGKKYPVKVSGVEIVPDPVARGEPATFKISAST 424
Score = 61.1 bits (127), Expect(4) = 4e-44
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +2 / +3
Query: 404 GSYSLQMKLLGDKKEELTCISFGFNIGFIAPVATI* 511
GSY++ MK+LGD EEL+CISFGF+IGF A ATI*
Sbjct: 2691 GSYTITMKMLGDNDEELSCISFGFSIGFAASEATI* 2798
Score = 22.1 bits (42), Expect(4) = 4e-44
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2 / +3
Query: 14 RATPQSFASAAMATNRRLRD 73
R+ PQ+ S+A+ RRLR+
Sbjct: 213 RSPPQNPLSSAVLRGRRLRE 272
Score = 70.3 bits (147), Expect(3) = 2e-28
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -1 / -2
Query: 402 GGVKDGRVCSLVSTNSPVAGQGVPAQKS*VSESTWKKKYHTSTTSFPLVMVLS 244
GGV DGRVC + SP+AGQ V +Q S VSE T KKKY TS TSFPL +VLS
Sbjct: 2547 GGVYDGRVC**ATKKSPLAGQEVTSQSSRVSEWT*KKKYFTSITSFPLPIVLS 2389
Score = 62.9 bits (131), Expect(3) = 2e-28
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -1 / -2
Query: 252 VLSVEAEILKVAGLPRTTGSGEISTPLTFTG*WRPL 145
++ VEAEILKVAG PR TGSG ISTPLTFTG + PL
Sbjct: 432 IIPVEAEILKVAGSPRATGSGTISTPLTFTGYFLPL 325
Score = 37.3 bits (75), Expect(3) = 2e-28
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3 / -3
Query: 511 SDSGDRRDEPDVEAEGDAGQLLFLVPQQLHLETVRA 404
SD G E D E E DA QLL ++ Q LH + VRA
Sbjct: 2798 SDGGF*CSETDAEPERDAAQLLIVITQHLHGDGVRA 2691
Score = 59.3 bits (123), Expect(3) = 4e-13
Identities = 24/47 (51%), Positives = 28/47 (59%)
Frame = -3 / -1
Query: 403 WWGERWQGLFAG*HEFAGCGTGSPSTEVVSF*IDVEEEVPHIYHQLP 263
WW WQGL E C GS TE+ SF +D+EEEV HI +QLP
Sbjct: 2548 WWSV*WQGLLMSYQEVTTCRAGSHITELTSFRVDIEEEVFHINNQLP 2408
Score = 30.4 bits (60), Expect(3) = 4e-13
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1 / -1
Query: 513 VQIVATGAMNPMLKPKEMQVXXXXXXXXXFIWRL*EP 403
+Q+VA+ A PML P EMQ+ F+ +*EP
Sbjct: 2800 IQMVASDAAKPMLNPNEMQLSSSSLSPSIFMVMV*EP 2690
Score = 28.6 bits (56), Expect(3) = 4e-13
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3 / -1
Query: 181 HAAHLHRIVAALI 143
HAAHLHR++ ALI
Sbjct: 361 HAAHLHRVLLALI 323
Score = 43.2 bits (88), Expect(2) = 0.001
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +3 / +3
Query: 270 WW*MCGTSSSTSIQKLTTSVLGLPVPQPANSC*PANRPCHLSPHQ 404
W M TSSS S +KL +SV+ LP Q S * ++PCH + HQ
Sbjct: 2415 WLLM*NTSSSMSTRKLVSSVM*LPARQVVTSW*LISKPCHHTLHQ 2549
Score = 22.6 bits (43), Expect(2) = 0.001
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 211 QARHLQDLRLH 243
+AR+LQDLR H
Sbjct: 391 RARNLQDLRFH 423
Score = 34.1 bits (68), Expect = 1.0
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = -2 / -3
Query: 404 LVG*KMAGSVXXXXXXXXXXXRESQHRSREFLNRRGRRSTTHLPPASLW*WFY 246
LV MAG R+S HR+ EF + RRS +H PASL+ FY
Sbjct: 2549 LVECMMAGFADELPRSHHLPGRKSHHRAHEFPSGHRRRSISHQ*PASLYR*FY 2391
>LOC_Os02g03260:12002.t00226:unspliced-genomic 3-isopropylmalate dehydratase large subunit 2, putative, expressed|
Length = 5026
Score = 27.2 bits (53), Expect(2) = 7.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3 / +1
Query: 6 PVVAPHHRALPPQRW 50
P PHHRA PP W
Sbjct: 58 PFRRPHHRAPPPPPW 102
Score = 25.8 bits (50), Expect(2) = 7.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1 / +2
Query: 496 CRHYLNQICAADQTRPWLQLQRAHHVCMYVP 588
CR + + A T PW L + V MY P
Sbjct: 1763 CRLLVRFLYLAQHTNPWSLLDQLWKV*MYAP 1855
>LOC_Os06g08970:12006.t00776:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 2138
Score = 27.6 bits (54), Expect(2) = 8.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3 / +1
Query: 454 QLLFLVPQQLHLETVRAWWGERWQGLFAG 368
QLLF P + RAW G W G G
Sbjct: 1462 QLLFRKPISKEFQVKRAWSGTIWDGWQTG 1548
Score = 24.0 bits (46), Expect(2) = 8.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -2 / +2
Query: 572 TWCALCNCNQGRVW 531
+WC LC + R W
Sbjct: 590 SWCVLCRISHRRSW 631
>LOC_Os10g35060:12010.t02801:unspliced-genomic Ser/Thr protein phosphatase family, putative, expressed|
Length = 3067
Score = 24.4 bits (47), Expect(2) = 8.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Frame = -2 / +2
Query: 572 TWCALCNCNQGRVWS 528
+WC C GR W+
Sbjct: 239 SWCPTCTRTTGRTWT 283
Score = 23.5 bits (45), Expect(2) = 8.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3 / +3
Query: 514 GSDSGDRRDEPDVEAEGDAGQL 449
G GDRR GDAGQL
Sbjct: 321 GRRGGDRRARRGGRRGGDAGQL 386
>LOC_Os03g63074:12003.t05528:unspliced-genomic Ser/Thr protein phosphatase family protein, expressed|
Length = 7153
Score = 28.6 bits (56), Expect(2) = 9.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3 / +2
Query: 595 VLQVHTYKRGVLFATATKGVFGPRHIFGSDSGDR 494
V QVH Y+R T GP HI D G+R
Sbjct: 1925 VTQVHAYERSNRVFNYTLDPCGPVHISVGDGGNR 2026
Score = 24.4 bits (47), Expect(2) = 9.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 402 GGVKDGRVCSLVSTN 358
GG K+GR CS TN
Sbjct: 5186 GGQKEGRCCSCYITN 5230
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 235,573,180
Number of extensions: 3426414
Number of successful extensions: 15984
Number of sequences better than 10.0: 21
Length of query: 223
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 175
Effective length of database: 52,912,542
Effective search space: 9259694850
Effective search space used: 9259694850
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)