>Q04561:RPOA_PRRSL Replicase polyprotein 1ab - Porcine reproductive and respiratory|
            syndrome virus (strain Lelystad) (PRRSV)
          Length = 3859
 Score = 29.6 bits (65), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 8    LSSLCPAHTRRRPRPHGLLAVKLAPSVDPVPGV 106
            +++LC      RP P  L+ V L P +D +PG+
Sbjct: 2458 VANLCSGVILMRPHPPSLVDVLLKPGLDTIPGI 2490


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 65,201,461
Number of extensions: 1072239
Number of successful extensions: 2421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2421
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 100,686,439
Length adjustment: 107
Effective length of query: 87
Effective length of database: 71,336,874
Effective search space: 6206308038
Effective search space used: 6206308038
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)