ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf94p23 |
|---|---|
| Clone Library Name | barley_pub |
>Q8BL48:ZC3H5_MOUSE Zinc finger CCCH domain-containing protein 5 - Mus musculus (Mouse)| Length = 810 Score = 67.4 bits (163), Expect = 2e-10 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 11/105 (10%) Frame = +2 Query: 716 SFKVNPCSRA--YTHDWTECPFAHPGENARRRDPRRVPYSCVPCPDFRR-----DPAACR 874 ++K PC + CP+ H ++ RRR PR+ Y PCP+ + DP C Sbjct: 215 NYKTEPCKKPPRLCRQGYACPYYHNSKD-RRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273 Query: 875 KGDACEYAHGVFESWLHPAQYRTRLCKD--EVG-CPR-RICFFAH 997 GDAC+Y H E HP Y++ C D + G CPR C FAH Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQAGSCPRGPFCAFAH 318
>Q9C0B0:ZC3H5_HUMAN Zinc finger CCCH domain-containing protein 5 - Homo sapiens (Human)| Length = 810 Score = 67.4 bits (163), Expect = 2e-10 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 11/105 (10%) Frame = +2 Query: 716 SFKVNPCSRA--YTHDWTECPFAHPGENARRRDPRRVPYSCVPCPDFRR-----DPAACR 874 ++K PC + CP+ H ++ RRR PR+ Y PCP+ + DP C Sbjct: 215 NYKTEPCKKPPRLCRQGYACPYYHNSKD-RRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273 Query: 875 KGDACEYAHGVFESWLHPAQYRTRLCKD---EVGCPR-RICFFAH 997 GDAC+Y H E HP Y++ C D CPR C FAH Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH 318
>Q6EE22:ZC3H5_CANFA Zinc finger CCCH domain-containing protein 5 - Canis familiaris| (Dog) Length = 810 Score = 67.4 bits (163), Expect = 2e-10 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 11/105 (10%) Frame = +2 Query: 716 SFKVNPCSRA--YTHDWTECPFAHPGENARRRDPRRVPYSCVPCPDFRR-----DPAACR 874 ++K PC + CP+ H ++ RRR PR+ Y PCP+ + DP C Sbjct: 215 NYKTEPCKKPPRLCRQGYACPYYHNSKD-RRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 273 Query: 875 KGDACEYAHGVFESWLHPAQYRTRLCKD---EVGCPR-RICFFAH 997 GDAC+Y H E HP Y++ C D CPR C FAH Sbjct: 274 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH 318
>Q86B79:UNK_DROME RING finger protein unkempt - Drosophila melanogaster (Fruit fly)| Length = 599 Score = 63.9 bits (154), Expect = 2e-09 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 11/110 (10%) Frame = +2 Query: 701 DFRMYSFKVNPCSRA--YTHDWTECPFAHPGENARRRDPRRVPYSCVPCPDFRR-----D 859 ++ + ++K PC R CP H ++ +RR PR+ Y PCP+ + + Sbjct: 189 NYVLANYKTEPCKRPPRLCRQGYACPQYHNSKD-KRRSPRKYKYRSTPCPNVKHGEEWGE 247 Query: 860 PAACRKGDACEYAHGVFESWLHPAQYRTRLCKD--EVG-CPRRI-CFFAH 997 P C GD C+Y H E HP Y++ C D + G CPR + C FAH Sbjct: 248 PGNCEAGDNCQYCHTRTEQQFHPEIYKSTKCNDVQQAGYCPRSVFCAFAH 297 Score = 32.3 bits (72), Expect = 7.5 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 15/91 (16%) Frame = +2 Query: 788 ENARRRDPRR-----VPYSCVP-CPDFRRDPAACRKGDACEYAH---GVFESWLHPAQYR 940 +N RRR P R YS C + C +GD C Y H G E H Y+ Sbjct: 54 QNQRRRRPVRKRDGTFNYSADNYCTKYDETTGICPEGDECPYLHRTAGDTERRYHLRYYK 113 Query: 941 TRLCKDEVG----CPRR--ICFFAHGARQLR 1015 T +C + C + C FAHG + R Sbjct: 114 TCMCVHDTDSRGYCVKNGLHCAFAHGMQDQR 144
>P17431:TISB_RAT Butyrate response factor 1 - Rattus norvegicus (Rat)| Length = 338 Score = 40.8 bits (94), Expect = 0.021 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE--SWLHPAQYRTRLCK--DEVG-CP-RRIC 985 Y C F + AC+ GD C++AHG+ E S +Y+T LC+ +G CP C Sbjct: 115 YKTELCRPFEEN-GACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173 Query: 986 FFAHGARQLRAV 1021 F H A + RA+ Sbjct: 174 HFIHNAEERRAL 185
>P23950:TISB_MOUSE Butyrate response factor 1 - Mus musculus (Mouse)| Length = 338 Score = 40.8 bits (94), Expect = 0.021 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE--SWLHPAQYRTRLCK--DEVG-CP-RRIC 985 Y C F + AC+ GD C++AHG+ E S +Y+T LC+ +G CP C Sbjct: 115 YKTELCRPFEEN-GACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173 Query: 986 FFAHGARQLRAV 1021 F H A + RA+ Sbjct: 174 HFIHNAEERRAL 185
>Q07352:TISB_HUMAN Butyrate response factor 1 - Homo sapiens (Human)| Length = 338 Score = 40.8 bits (94), Expect = 0.021 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE--SWLHPAQYRTRLCK--DEVG-CP-RRIC 985 Y C F + AC+ GD C++AHG+ E S +Y+T LC+ +G CP C Sbjct: 115 YKTELCRPFEEN-GACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 173 Query: 986 FFAHGARQLRAV 1021 F H A + RA+ Sbjct: 174 HFIHNAEERRAL 185
>Q86YZ3:HORN_HUMAN Hornerin - Homo sapiens (Human)| Length = 2850 Score = 35.8 bits (81), Expect = 0.68 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 873 RHAAGSRRKSGHGTHEYGTRRGSRRRAFSPGWAKGHS 763 RH +GSR+ S +G H YG+ R S R + G GHS Sbjct: 547 RHESGSRQSSSYGPHGYGSGRSSSRGPYESG--SGHS 581
>P23949:TISD_MOUSE Butyrate response factor 2 - Mus musculus (Mouse)| Length = 367 Score = 33.5 bits (75), Expect = 3.4 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE--SWLHPAQYRTRLCK--DEVG-CP-RRIC 985 Y C F + C+ G+ C++AHG E S +Y+T LC+ +G CP C Sbjct: 127 YKTELCRPFE-ESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 185 Query: 986 FFAHGARQLR 1015 F H A + R Sbjct: 186 HFIHNADERR 195
>P47974:TISD_HUMAN Butyrate response factor 2 - Homo sapiens (Human)| Length = 494 Score = 33.5 bits (75), Expect = 3.4 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE--SWLHPAQYRTRLCK--DEVG-CP-RRIC 985 Y C F + C+ G+ C++AHG E S +Y+T LC+ +G CP C Sbjct: 154 YKTELCRPFE-ESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC 212 Query: 986 FFAHGARQLR 1015 F H A + R Sbjct: 213 HFIHNADERR 222
>P47980:TIS1_DROME Protein TIS11 - Drosophila melanogaster (Fruit fly)| Length = 436 Score = 33.1 bits (74), Expect = 4.4 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Frame = +2 Query: 824 YSCVPCPDFRRDPAACRKGDACEYAHGVFE---SWLHPAQYRTRLCK--DEVG-CP-RRI 982 Y C F + C+ G+ C++AHG E HP +Y+T C+ VG CP Sbjct: 136 YKTELCRPFE-EAGECKYGEKCQFAHGSHELRNVHRHP-KYKTEYCRTFHSVGFCPYGPR 193 Query: 983 CFFAHGARQLRA 1018 C F H A + RA Sbjct: 194 CHFVHNADEARA 205
>Q92V71:PHNC_RHIME Phosphonates import ATP-binding protein phnC - Rhizobium meliloti| (Sinorhizobium meliloti) Length = 279 Score = 32.3 bits (72), Expect = 7.5 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Frame = +2 Query: 338 TPAMVAALYGSTTVLSYVLSIA----PSEAARASASDGATPLLLA 460 T A VAA+YG+ T + ++ P+EA R +AS G PL LA Sbjct: 233 TAAAVAAIYGAETAIEESMTSTSINIPAEAPRETASAGLKPLALA 277
>Q90625:ZBT17_CHICK Zinc finger and BTB domain-containing protein 17 - Gallus gallus| (Chicken) Length = 706 Score = 32.0 bits (71), Expect = 9.8 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Frame = +2 Query: 566 QNQNQNSPTKKDSPPDSRRTTTKKDYSSASDSQTEDINAGVFATDDFRMYSFKVNPCSRA 745 +++ + K P + + + S ++DS E N+G T R ++ S+A Sbjct: 144 EDEEEAKIPKAAQPKSESKENAEDNESGSTDSGQE--NSG--ETRLLRSGTYSDRTESKA 199 Query: 746 Y---THDWTEC--PFAHPGENAR--RRDPRRVPYSCVPCPDFRRDPAACR 874 Y TH +C F H G R R P+SC C DPAAC+ Sbjct: 200 YAAVTHKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECNKAFSDPAACK 249
>Q6D8D9:DXR_ERWCT 1-deoxy-D-xylulose 5-phosphate reductoisomerase - Erwinia| carotovora subsp. atroseptica (Pectobacterium atrosepticum) Length = 398 Score = 32.0 bits (71), Expect = 9.8 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%) Frame = -3 Query: 969 HPTSSLQSLVRYCAG------WSHDSKTPCAYSQASPLRHAAGSR 853 HP S + S+VRY G S D +TP A++ A P R A+G++ Sbjct: 251 HPQSVIHSMVRYRDGSVLAQLGSPDMRTPIAHAMAYPERVASGAK 295 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 160,940,903 Number of extensions: 2675749 Number of successful extensions: 10961 Number of sequences better than 10.0: 14 Number of HSP's gapped: 10916 Number of HSP's successfully gapped: 15 Length of query: 661 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 541 Effective length of database: 67,771,039 Effective search space: 36664132099 Effective search space used: 36664132099 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
