ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf91o16 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g55390:12002.t05115:unspliced-genomic 60S ribosomal protein L39, putative, expressed| Length = 777 Score = 85.4 bits (180), Expect(2) = 1e-25 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = +1 / +2 Query: 67 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 171 PSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIR Sbjct: 176 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIR 280 Score = 50.1 bits (103), Expect(2) = 1e-25 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = +1 / +2 Query: 169 RYNAKRRHWRRTKLGF*AG 225 RYNAKRRHWRRTKLGF*AG Sbjct: 374 RYNAKRRHWRRTKLGF*AG 430 Score = 66.6 bits (139), Expect(3) = 9e-18 Identities = 29/36 (80%), Positives = 31/36 (86%) Frame = -2 / -1 Query: 173 YLMVLSVLMRIQ*GMGRFWRCFLASFCLIRKVLCDG 66 +LMVLSV MRIQ*GMGRFWR F ASF L+RKVL DG Sbjct: 282 HLMVLSVRMRIQ*GMGRFWRIFFASFFLMRKVLWDG 175 Score = 30.4 bits (60), Expect(3) = 9e-18 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = -2 / -1 Query: 206 LVRRQCLRLALYL 168 LVRRQCLR ALYL Sbjct: 411 LVRRQCLRFALYL 373 Score = 29.5 bits (58), Expect(3) = 9e-18 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 / -2 Query: 256 VGSDGSHRPHPLLRIRAWCG 197 + S GS+R + LLR +AWCG Sbjct: 461 LASAGSNRCYLLLRTQAWCG 402 Score = 35.4 bits (71), Expect(2) = 9e-05 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -1 / -3 Query: 222 CLESELGAAPVPALGVVPD 166 C E +LGAAPVPAL VVP+ Sbjct: 427 CSEPKLGAAPVPALRVVPE 371 Score = 29.5 bits (58), Expect(2) = 9e-05 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = -1 / -3 Query: 171 PDGVVGPHAD 142 PDGVVGPHAD Sbjct: 280 PDGVVGPHAD 251
>LOC_Os02g55370:12002.t05113:unspliced-genomic 60S ribosomal protein L39, putative, expressed| Length = 642 Score = 85.4 bits (180), Expect(2) = 1e-25 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = +1 / +3 Query: 67 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 171 PSHKTFRIK+KLAKK RQNRPIPYWIRMRTDNTIR Sbjct: 150 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIR 254 Score = 50.1 bits (103), Expect(2) = 1e-25 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = +1 / +1 Query: 169 RYNAKRRHWRRTKLGF*AG 225 RYNAKRRHWRRTKLGF*AG Sbjct: 364 RYNAKRRHWRRTKLGF*AG 420 Score = 69.3 bits (145), Expect(2) = 4e-15 Identities = 32/47 (68%), Positives = 36/47 (76%) Frame = -2 / -3 Query: 206 LVRRQCLRLALYLMVLSVLMRIQ*GMGRFWRCFLASFCLIRKVLCDG 66 L RR+ + +LMVLSV MRIQ*GMGRFWR F ASF L+RKVL DG Sbjct: 289 LARRRGASKSNHLMVLSVRMRIQ*GMGRFWRIFFASFFLMRKVLWDG 149 Score = 30.9 bits (61), Expect(2) = 4e-15 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -3 / -3 Query: 250 SDGSHRPHPLLRIRAWCG 197 S GS R H LLR +AWCG Sbjct: 445 SAGSSRCHLLLRTQAWCG 392 Score = 35.0 bits (70), Expect(2) = 1e-04 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -1 / -1 Query: 222 CLESELGAAPVPALGVVPD 166 C E +LGAAPVPAL V+P+ Sbjct: 417 CSEPKLGAAPVPALRVIPE 361 Score = 29.5 bits (58), Expect(2) = 1e-04 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = -1 / -2 Query: 171 PDGVVGPHAD 142 PDGVVGPHAD Sbjct: 254 PDGVVGPHAD 225 Score = 30.4 bits (60), Expect = 8.3 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = -2 / -2 Query: 206 LVRRQCLRLALYL 168 LVRRQCLR ALYL Sbjct: 401 LVRRQCLRFALYL 363
>LOC_Os06g08320:12006.t00713:unspliced-genomic 60S ribosomal protein L39, putative, expressed| Length = 686 Score = 83.5 bits (176), Expect(2) = 2e-24 Identities = 32/35 (91%), Positives = 34/35 (97%) Frame = +1 / +1 Query: 67 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIR 171 PSHKTF+IK+KLAKK RQNRPIPYWIRMRTDNTIR Sbjct: 133 PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIR 237 Score = 47.8 bits (98), Expect(2) = 2e-24 Identities = 18/20 (90%), Positives = 19/20 (95%) Frame = +1 / +3 Query: 163 TIRYNAKRRHWRRTKLGF*A 222 + RYNAKRRHWRRTKLGF*A Sbjct: 324 SFRYNAKRRHWRRTKLGF*A 383 Score = 67.0 bits (140), Expect(3) = 6e-18 Identities = 29/36 (80%), Positives = 29/36 (80%) Frame = -2 / -1 Query: 173 YLMVLSVLMRIQ*GMGRFWRCFLASFCLIRKVLCDG 66 YLMVLSV MRIQ GMGRFWR F ASF LI VLCDG Sbjct: 239 YLMVLSVRMRIQYGMGRFWRIFFASFFLIWNVLCDG 132 Score = 38.6 bits (78), Expect(3) = 6e-18 Identities = 16/21 (76%), Positives = 17/21 (80%) Frame = -1 / -1 Query: 225 PCLESELGAAPVPALGVVPDG 163 P E ELGAAPVPAL VVP+G Sbjct: 386 PSSEPELGAAPVPALRVVPEG 324 Score = 22.6 bits (43), Expect(3) = 6e-18 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = -1 / -2 Query: 375 KWFHNQQN 352 KWF NQQN Sbjct: 562 KWFFNQQN 539 Score = 30.4 bits (60), Expect(2) = 0.021 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = -2 / -2 Query: 206 LVRRQCLRLALYL 168 LVRRQCLR ALYL Sbjct: 367 LVRRQCLRFALYL 329 Score = 26.3 bits (51), Expect(2) = 0.021 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -1 / -3 Query: 174 VPDGVVGPHAD 142 +PDGVVG HAD Sbjct: 240 LPDGVVGAHAD 208 Score = 26.7 bits (52), Expect(2) = 7.5 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +3 / +2 Query: 192 LAPHQARILSRG 227 LAPHQAR+LS G Sbjct: 353 LAPHQARVLSLG 388 Score = 22.1 bits (42), Expect(2) = 7.5 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +3 / +3 Query: 66 AVAQDLPDQ 92 AVAQD+PDQ Sbjct: 132 AVAQDVPDQ 158
>LOC_Os05g45640:12005.t04052:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2602 Score = 35.0 bits (70), Expect = 0.35 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +1 / +2 Query: 145 RMRTDNTIRYNAKRRHWRRTKLGF*AGDEDDGSRRCRRE 261 R R T R+ +RRH RR G GD+D G CR E Sbjct: 206 RRR*PATRRHGQRRRHPRRRWRGVRRGDDDHGGLNCRPE 322
>LOC_Os05g25090:12005.t02165:unspliced-genomic hypothetical protein| Length = 1062 Score = 34.1 bits (68), Expect = 0.65 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 / -2 Query: 124 RPIPYWIRMRTDNTIRYNAKRRHWRRTK 207 RP+P W R T +++ ++ RR WR T+ Sbjct: 140 RPLPVWHRRLTPSSLTTSSPRRRWRATR 57
>LOC_Os11g24590:12011.t02081:unspliced-genomic transposon protein, putative, Pong sub-class, expressed| Length = 3598 Score = 33.6 bits (67), Expect = 0.89 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 / -1 Query: 192 LAPHQARILSRG*GRWLPSLPTGEGSRVPR 281 L P AR + RG +W P+ G+G R PR Sbjct: 142 LLPEDARKVDRGGTKWAPTTTGGDGGRQPR 53
>LOC_Os07g25760:12007.t02272:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 5496 Score = 33.1 bits (66), Expect = 1.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 / +3 Query: 124 RPIPYWIRMRTDNTIRYNAKRRHWRRTK 207 RP+P W R T +++ + RR WR T+ Sbjct: 4218 RPLPVWHRRLTPSSLTTSIPRRQWRATR 4301
>LOC_Os11g45750:12011.t04102:unspliced-genomic NBS-LRR disease resistance protein, putative, expressed| Length = 11431 Score = 31.8 bits (63), Expect = 3.2 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 / +2 Query: 449 FRVIKDFNWSNDLLVRQNTELML 381 FR++ NW ND+LV + TE+++ Sbjct: 2189 FRIVSCVNWLNDILVNKVTEIVI 2257
>LOC_Os09g19530:12009.t01688:unspliced-genomic transposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os08g44570:12008.t04181:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os08g07130:12008.t00602:unspliced-genomic transposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os06g42980:12006.t03988:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os06g29140:12006.t02618:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6155 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +2 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3620 PSPRSSDGAGRPRPSGRPRGHCG 3688
>LOC_Os06g16320:12006.t01505:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5961 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os06g15510:12006.t01424:unspliced-genomic transposon protein, putative, unclassified| Length = 4298 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +2 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 1763 PSPRSSDGAGRPRPSGRPRGHCG 1831
>LOC_Os06g07530:12006.t00636:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5771 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +2 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3620 PSPRSSDGAGRPRPSGRPRGHCG 3688
>LOC_Os04g54260:12004.t04899:unspliced-genomic transposon protein, putative, unclassified| Length = 6159 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os01g47250:12001.t04173:unspliced-genomic transposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os01g45690:12001.t04022:unspliced-genomic transposon protein, putative, unclassified| Length = 5673 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os01g45590:12001.t04014:unspliced-genomic transposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os01g24630:12001.t02183:unspliced-genomic transposon protein, putative, unclassified| Length = 6156 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +3 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 3621 PSPRSSDGAGRPRPSGRPRGHCG 3689
>LOC_Os01g05730:12001.t00457:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2322 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 / -2 Query: 243 PSLPTGEGSRVPRVYYVSLFLKDIIIAACSLPGIP 347 P+L TG RV + S +L ++++ SLPG P Sbjct: 128 PTLATGA*ERVELYFRSSSYLLPLVVSTVSLPGFP 24
>LOC_Os01g04780:12001.t00366:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 9178 Score = 31.8 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 / +1 Query: 265 PSPVGSDGSHRPHPLLRIRAWCG 197 PSP SDG+ RP P R R CG Sbjct: 6508 PSPRSSDGAGRPRPSGRPRGHCG 6576
>LOC_Os12g31300:12012.t02834:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 2250 Score = 31.3 bits (62), Expect = 4.3 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 / -2 Query: 243 PSLPTGEGSRVPRVYYVSLFLKDIIIAACSLPGIP 347 P+L TG RV + S +L ++++ SLPG P Sbjct: 128 PTLATGA*ERVELYFGSSSYLLPLVVSTISLPGFP 24
>LOC_Os10g11506:12010.t00945:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2958 Score = 31.3 bits (62), Expect = 4.3 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 / -2 Query: 240 LPSLPTGEGSRVPRVYYVSLFLKDIIIAACSLPGIP 347 +P+L TG RV + S++ ++++ SLPG P Sbjct: 131 MPTLATGA*ERVELYFKSSIYPLPLVVSTVSLPGFP 24
>LOC_Os08g39330:12008.t03665:unspliced-genomic skin secretory protein xP2 precursor, putative, expressed| Length = 1473 Score = 26.3 bits (51), Expect(2) = 4.4 Identities = 11/42 (26%), Positives = 22/42 (52%) Frame = +1 / +3 Query: 67 PSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRH 192 P + R K + +++++ RP+P +R + R +RRH Sbjct: 948 PRPRQVRRKNRSQRQRQRRRPLPSKKLLRRPSRWRRRLRRRH 1073 Score = 22.1 bits (42), Expect(2) = 4.4 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +3 / +3 Query: 234 RWLPSLPTGEGSR 272 RWLPS P E +R Sbjct: 1086 RWLPSRPPSELAR 1124
>LOC_Os06g10020:12006.t00880:unspliced-genomic expressed protein| Length = 927 Score = 30.9 bits (61), Expect = 6.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 / +3 Query: 240 LPSLPTGEGSRVPRVYYVSLFLKDIIIA 323 LPSLPT + S +PR + + + DI+ A Sbjct: 60 LPSLPTCDSSSLPRHFLIPVMAGDIVTA 143
>LOC_Os06g12390:12006.t01116:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed| Length = 6132 Score = 30.9 bits (61), Expect = 6.0 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +1 / -3 Query: 64 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRH 192 +P H++ + + K +NR I + ++ T+N RYN R H Sbjct: 3223 LPRHQSIFLNKS*GLKVMKNRII*QYQKLHTNNVCRYNT*RGH 3095
>LOC_Os04g55879:12004.t05060:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6770 Score = 30.9 bits (61), Expect = 6.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 / +1 Query: 175 NAKRRHWRRTKLGF*AGDEDDGSRRCRRE 261 + +RRH RR G GD+D G CR E Sbjct: 139 DGRRRHPRRRWRGVRRGDDDHGGLNCRPE 225
>LOC_Os01g65100:12001.t05876:unspliced-genomic POT family protein, expressed| Length = 2659 Score = 30.4 bits (60), Expect = 8.2 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 / -1 Query: 201 HQARILSRG*GRWLPSLPTGEGSRVPR 281 ++ R L R GRW P G GSR PR Sbjct: 319 YRGRTLRRTSGRWRRGRPGGRGSRRPR 239 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 124,527,647 Number of extensions: 1562967 Number of successful extensions: 7570 Number of sequences better than 10.0: 30 Length of query: 157 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 110 Effective length of database: 52,968,820 Effective search space: 5826570200 Effective search space used: 5826570200 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
