>Q9UDY8:MALT1_HUMAN Mucosa-associated lymphoid tissue lymphoma translocation protein 1|
           - Homo sapiens (Human)
          Length = 824
 Score = 32.3 bits (72), Expect = 4.2
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 904 SYLMYPSNPRFECRFSSLSSLEKLQEHLPLTGYLRVD-TEVEDTTS*KQ 761
           SYL+    P+  C ++ LSSL+KL+EHL  T  L    + +EDT   KQ
Sbjct: 656 SYLVSKDLPK-HCLYTRLSSLQKLKEHLVFTVCLSYQYSGLEDTVEDKQ 703

>Q2TBA3:MALT1_MOUSE Mucosa-associated lymphoid tissue lymphoma translocation protein 1|
           homolog - Mus musculus (Mouse)
          Length = 832

 Score = 32.0 bits (71), Expect = 5.4
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 904 SYLMYPSNPRFECRFSSLSSLEKLQEHLPLTGYLRVD-TEVEDTTS*KQ 761
           SYL+    P+  C ++ LSSL+KL+EHL  T  L    + +EDT   KQ
Sbjct: 664 SYLVSKDLPK-HCLYTRLSSLQKLKEHLIFTVCLSYQYSGLEDTVEEKQ 711

>P43057:KPC1_CANAL Protein kinase C-like 1 - Candida albicans (Yeast)|
          Length = 1097

 Score = 31.6 bits (70), Expect = 7.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 960 HCRNYKPWG*KNKQRATQCLI*CILQILASNADFLHFLL*KNFRNIFL*QAICASIQKLK 781
           HC    PWG KN ++ T+C + C  Q      DF          ++ +   I A+I+  K
Sbjct: 496 HCGYILPWGKKNVRKCTECGVMCHAQCTHLVPDFCGM-------SLQMANEILATIESTK 548

Query: 780 IQPAES 763
           + P ++
Sbjct: 549 VSPKKA 554

>Q3AER0:ILVD_CARHZ Dihydroxy-acid dehydratase - Carboxydothermus hydrogenoformans|
           (strain Z-2901 / DSM 6008)
          Length = 553

 Score = 31.6 bits (70), Expect = 7.1
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
 Frame = +1

Query: 532 EASGDFMSGDTSLTA----RRRLSALAGQKESDKRKEFNLLRYEAIKDELLL--LTVGIG 693
           EA G  + G+ ++ A    R RL+ L+G+K  +   + N+   +    E LL  L V + 
Sbjct: 205 EAIGMALPGNGTIPAVYAERLRLAKLSGEKVMELLSQ-NIRPRDIFTRESLLNGLAVDMA 263

Query: 694 AACTVYCVLVFSLEAGISYAFGVAFSWLYLQLLYRRADSLSK---------ED------V 828
             C+   VL     A ++Y  GV F    +  +  R  +L +         ED      +
Sbjct: 264 LGCSTNTVLHL---AAVAYEAGVEFDLNLVNEVSERTPNLCRLSPAGPHHMEDLYFAGGI 320

Query: 829 PEVFLKKKVKKIGIRSEDLKDTLDKTLGGSL--FVLSSPRLIIP 954
           P V   K++ K G+  EDL     KT+G +L   V  +P +I P
Sbjct: 321 PAVM--KELSKKGLIREDLLTVSGKTVGENLKNAVNKNPEVIRP 362

>P33451:RPOD_RICPR RNA polymerase sigma factor rpoD - Rickettsia prowazekii|
          Length = 635

 Score = 31.2 bits (69), Expect = 9.3
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 385 VSKVADMVLRRNDTGLDVIEATTDHENAEDVGQLEDFR 498
           + ++ + +L+ +D G+D++E+  D E   D+G  E+F+
Sbjct: 44  IRQLEEAILKFSDAGVDILESNEDDEIKLDIGMDEEFK 81

>Q4UJT1:RPOD_RICFE RNA polymerase sigma factor rpoD - Rickettsia felis (Rickettsia|
           azadi)
          Length = 635

 Score = 31.2 bits (69), Expect = 9.3
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 385 VSKVADMVLRRNDTGLDVIEATTDHENAEDVGQLEDFR 498
           + ++ + +L+ +D G+D++E+  D E   D+G  E+F+
Sbjct: 44  IRQLEEAILKFSDAGVDILESNEDDEIKLDIGMDEEFK 81

>Q92FZ8:RPOD_RICCN RNA polymerase sigma factor rpoD - Rickettsia conorii|
          Length = 634

 Score = 31.2 bits (69), Expect = 9.3
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 385 VSKVADMVLRRNDTGLDVIEATTDHENAEDVGQLEDFR 498
           + ++ + +L+ +D G+D++E+  D E   D+G  E+F+
Sbjct: 44  IRQLEEAILKFSDAGVDILESNEDDEIKLDIGMDEEFK 81


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 192,382,077
Number of extensions: 3888983
Number of successful extensions: 10985
Number of sequences better than 10.0: 7
Number of HSP's gapped: 10982
Number of HSP's successfully gapped: 7
Length of query: 412
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 296
Effective length of database: 68,868,219
Effective search space: 20384992824
Effective search space used: 20384992824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)