Clone Name | FLbaf94m06 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os03g03860:12003.t00267:unspliced-genomic expressed protein| Length = 5337 Score = 31.3 bits (62), Expect(2) = 0.26 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 / -3 Query: 190 LPRLLSCLRHMKTRCHPNSL*KALFPCPSKHPRLQR 83 LP L LR + R P + AL PC +HPRL R Sbjct: 3877 LPPLPLLLRRWRWRPAPVAFLLALQPCSGQHPRLLR 3770 Score = 26.7 bits (52), Expect(2) = 0.26 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 / -1 Query: 608 EFDTLTHKKKTSNLHASTKHCH 543 +F L H K T LH+ T CH Sbjct: 5250 KFSILQHTKLTDILHSPTPPCH 5185
>LOC_Os02g24190:12002.t02116:unspliced-genomic cyclin-dependent protein kinase, putative, expressed| Length = 11209 Score = 35.9 bits (72), Expect = 0.27 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 / -2 Query: 280 PTTPGMSHNPQIVICMSSQNPRSPYVHHYPLP 185 P++P H PQ+ +SS +P +P + YPLP Sbjct: 2769 PSSPPHQHRPQLHRLLSSPSPSAPPISVYPLP 2674
>LOC_Os03g62110:12003.t05438:unspliced-genomic nicotinate phosphoribosyltransferase, putative, expressed| Length = 6770 Score = 34.5 bits (69), Expect = 0.70 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 / -1 Query: 15 QQRQHHEASEPKHGSLQQCPIILRCRR 95 +QR+HH P+H S P+ RCRR Sbjct: 173 EQRRHHRVRRPRHPSSAPRPVRRRCRR 93
>LOC_Os07g32590:12007.t02941:unspliced-genomic methionine aminopeptidase 1B, chloroplast precursor, putative,| expressed Length = 4335 Score = 28.6 bits (56), Expect(2) = 1.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -2 / +1 Query: 307 LSLVQGCPRPTTPGMS 260 L+L GCPRP TP M+ Sbjct: 43 LALSVGCPRPPTPSMA 90 Score = 26.3 bits (51), Expect(2) = 1.8 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -2 / +2 Query: 121 LFPCPSKHPRLQRRIIGHC 65 LFPC H LQ ++ G C Sbjct: 1199 LFPCCLSHQLLQMKLTGKC 1255
>LOC_Os12g41030:12012.t03780:unspliced-genomic ethylene-responsive transcription factor 9, putative| Length = 423 Score = 33.1 bits (66), Expect = 1.8 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = +2 / -2 Query: 251 WIMRHAWCCWAWTP 292 W RH W CW W P Sbjct: 398 WSRRHPWWCWCWPP 357
>LOC_Os11g09960:12011.t00888:unspliced-genomic expressed protein| Length = 3982 Score = 33.1 bits (66), Expect = 1.8 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 / +2 Query: 197 MMNIWRTWVLRAHANHYLWIMRH 265 M+ W W L+A+A H +W+ RH Sbjct: 2582 MLGSWINWELKAYALHLVWLGRH 2650
>LOC_Os07g47030:12007.t04339:unspliced-genomic expressed protein| Length = 8306 Score = 33.1 bits (66), Expect = 1.8 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 / +3 Query: 534 NSGRPREKMTWCPSILSLMEC 472 NS PR K WCP+ LSL+ C Sbjct: 2718 NS*SPRVKSPWCPADLSLLSC 2780
>LOC_Os10g37850:12010.t03043:unspliced-genomic armadillo-repeat containing protein, putative, expressed| Length = 2402 Score = 25.4 bits (49), Expect(3) = 1.9 Identities = 11/38 (28%), Positives = 16/38 (42%) Frame = +2 / +1 Query: 107 RAWKQRLSKGIWMAPCFHMAKTTQQSRKGVMMNIWRTW 220 R+ +R S G WM A+T + + WR W Sbjct: 946 RSGTRRRSTGRWMGSSTRYARTRRACCRRSAAATWRRW 1059 Score = 23.5 bits (45), Expect(3) = 1.9 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +2 / +1 Query: 260 RHAWCCWAWTP 292 R AWC WA +P Sbjct: 1636 RTAWCRWACSP 1668 Score = 23.1 bits (44), Expect(3) = 1.9 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = +3 / +3 Query: 567 KVGCFLFVSQCIKLRC 614 K+ FLF CIK+ C Sbjct: 2172 KLVAFLFAVNCIKIPC 2219
>LOC_Os03g16420:12003.t01426:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 924 Score = 26.7 bits (52), Expect(2) = 2.0 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 / -2 Query: 220 PRSPYVHHYPLPRLLSC 170 PRSP H+P RLL C Sbjct: 842 PRSPQSKHFPR*RLLPC 792 Score = 23.5 bits (45), Expect(2) = 2.0 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = -2 / -2 Query: 115 PCPSKHPRLQRRIIGHC 65 PC PR RR+ HC Sbjct: 728 PCTCSLPRR*RRLASHC 678
>LOC_Os04g46010:12004.t04133:unspliced-genomic tetratricopeptide-like helical, putative, expressed| Length = 2685 Score = 25.4 bits (49), Expect(3) = 2.2 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = +2 / -3 Query: 605 TPMPPQKKKK 634 TP PPQKKKK Sbjct: 481 TPPPPQKKKK 452 Score = 24.4 bits (47), Expect(3) = 2.2 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +3 / -3 Query: 339 ELMYEARTMFLSYSQRCTHIELPGCIGHR 425 ++MY+ + F S +Q C L +GH+ Sbjct: 1528 KVMYQLQIPFFSSAQMCFLFSLSS*LGHK 1442 Score = 22.1 bits (42), Expect(3) = 2.2 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +1 / -1 Query: 223 FASSCKSLFVDYETCLVLLGVDTLVPSSDNVPFSMP*C 336 F SC+SLF ++ LL V L + S P C Sbjct: 1839 FLPSCRSLFSFFQGFFRLLRVPQLNMHTSKSCVSSPVC 1726
>LOC_Os05g51860:12005.t04611:unspliced-genomic conserved hypothetical protein| Length = 3861 Score = 27.2 bits (53), Expect(2) = 2.4 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -2 / -1 Query: 286 PRPTTPGMSHNPQIVICMSSQNPRSPYVHHYPLP 185 P P +P + P + C SS + HH PLP Sbjct: 2382 PPPPSPLLCLKPAVASCPSSSLLPAAGRHHRPLP 2281 Score = 22.6 bits (43), Expect(2) = 2.4 Identities = 7/14 (50%), Positives = 8/14 (57%) Frame = -2 / -2 Query: 448 PTKKTFCARCPIQP 407 PT+ C RCP P Sbjct: 2495 PTRLRHCRRCPSAP 2454
>LOC_Os08g07970:12008.t00685:unspliced-genomic transcription factor TGA4, putative, expressed| Length = 9095 Score = 32.7 bits (65), Expect = 2.5 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +2 / -1 Query: 212 RTWVLRAHANHYLWIMRHAWCCWAWTP 292 RTW L A A W R CW W P Sbjct: 7052 RTWALLAAAARRPWRRRRRCWCWRWCP 6972
>LOC_Os07g10300:12007.t00904:unspliced-genomic expressed protein| Length = 5090 Score = 32.7 bits (65), Expect = 2.5 Identities = 15/46 (32%), Positives = 18/46 (39%) Frame = -2 / +2 Query: 289 CPRPTTPGMSHNPQIVICMSSQNPRSPYVHHYPLPRLLSCLRHMKT 152 CPRPTTP + P S P P P P +S R + Sbjct: 77 CPRPTTPRSTSGPAAAHSSPSPTPSRPSPAAMPTPTSISRTRRFSS 214
>LOC_Os06g07090:12006.t00593:unspliced-genomic AP-1 complex subunit gamma-1, expressed| Length = 9984 Score = 32.7 bits (65), Expect = 2.5 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -1 / -3 Query: 467 HYTLHETYKENILRSVSYTTG*FNMGTPLRIGKEHRPSFIHQLKHY 330 H TLH Y NI+ S+ N+GT L H+ S H+ K + Sbjct: 2053 HQTLHFQYSANIISSLPINHDHRNLGTVLHSQLSHQTS*NHRTKDF 1916
>LOC_Os03g64200:12003.t05631:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,| expressed Length = 5162 Score = 32.7 bits (65), Expect = 2.5 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +2 / +2 Query: 266 AWCCWAWTP 292 +WCCW+WTP Sbjct: 4838 SWCCWSWTP 4864
>LOC_Os01g60490:12001.t05430:unspliced-genomic OsWRKY22 - Superfamily of rice TFs having WRKY and zinc finger| domains, expressed Length = 3980 Score = 32.7 bits (65), Expect = 2.5 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 / -3 Query: 124 ALFPCPSKHPRLQRRIIGHC*REPCFGSEASWCCLC 17 ++FP P R +R+ G R+PC + WC +C Sbjct: 3618 SVFPPPVPFSRRRRQSAGFAWRKPCNRRQNCWCRMC 3511
>LOC_Os11g14800:12011.t01311:unspliced-genomic hypothetical protein| Length = 1048 Score = 31.8 bits (63), Expect = 4.7 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 / +1 Query: 428 AKCFLCRFHAKYSVSHSMSDNMLGHQVIFS 517 + C+ R HA+YSV+ M+D GH+ + S Sbjct: 418 SSCYRHRAHAEYSVTIIMTDTRFGHKQLSS 507
>LOC_Os01g67420:12001.t06099:unspliced-genomic triacylglycerol lipase, putative, expressed| Length = 7577 Score = 31.8 bits (63), Expect = 4.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -2 / +1 Query: 634 FFFFLGGHRSLIH*LTKRKHPTFMHQLNI 548 FFFFLGG +++ *L K+K H L++ Sbjct: 2656 FFFFLGGGGAMLF*LHKKKRDYAAHVLSV 2742
>LOC_Os01g63290:12001.t05698:unspliced-genomic sialin, putative, expressed| Length = 8085 Score = 31.8 bits (63), Expect = 4.7 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 / -1 Query: 256 NPQIVICMSSQNPRSPYVHHYPLPRLLS 173 NP I+IC + +P Y H + +P LLS Sbjct: 2340 NPTIIICKNCFHP*KKYYHSFLIPGLLS 2257
>LOC_Os04g14510:12004.t01270:unspliced-genomic PHD-finger family protein, expressed| Length = 8878 Score = 26.3 bits (51), Expect(2) = 5.5 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -2 / +2 Query: 466 TILCMKPTKKTFCARCPIQPGSSIW 392 T C+ TK+T C + GSS+W Sbjct: 8096 TWFCILVTKETTCIQLYANIGSSVW 8170 Score = 22.1 bits (42), Expect(2) = 5.5 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -3 / +2 Query: 543 HKINSGRPREKMTWC 499 HK+NSG P ++ C Sbjct: 7952 HKVNSGPPGADLSEC 7996
>LOC_Os11g44390:12011.t03967:unspliced-genomic transposon protein, putative, unclassified| Length = 7245 Score = 24.9 bits (48), Expect(2) = 5.6 Identities = 11/44 (25%), Positives = 20/44 (45%) Frame = -1 / +3 Query: 224 KPTFAICSSLPPSETVELSSPYENKVPSKFPLKGAVSMPFKTSS 93 +P + C++ PP+ T+ L P + +S+P SS Sbjct: 3072 RPPWPACAAQPPAPTLPLPPPLRRSARVSKTRRQHLSLPRALSS 3203 Score = 23.5 bits (45), Expect(2) = 5.6 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -2 / +2 Query: 322 KKEHCLSLVQGCPRPTTPGMSHNPQIVICMSSQNPRSP 209 ++E LSL P + +S P V +++QNP P Sbjct: 2906 RRERALSLSLFLPLSLSRFLSRAPTPVPAVAAQNPPPP 3019
>LOC_Os11g37730:12011.t03313:unspliced-genomic glutathione S-transferase theta-1, putative, expressed| Length = 4410 Score = 31.3 bits (62), Expect = 6.5 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 / -3 Query: 426 LGVLYNRVVQYGYTFENRKGTSSELHTSTQTLWHRKR 316 +G+LY V++YG T ++R T L ++ LW R + Sbjct: 1330 MGLLYYIVMKYGLTGKSRT*TFFSLASNASNLWFRHK 1220
>LOC_Os09g07154:12009.t003579:unspliced-genomic expressed protein| Length = 2477 Score = 31.3 bits (62), Expect = 6.5 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +2 / -3 Query: 428 AKCFLCRFHAKYSVSHSMSDNMLGHQVIFS 517 + C+L R HAKY++ M++ GH+ + S Sbjct: 2436 SSCYLHRAHAKYTMMMIMTNTQFGHKQLSS 2347
>LOC_Os06g51240:12006.t04807:unspliced-genomic expressed protein| Length = 3738 Score = 31.3 bits (62), Expect = 6.5 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +2 / +1 Query: 113 WKQRLSKGIWMAPCFHMAKTTQQSR 187 W+ RLS PC H A T Q R Sbjct: 2638 WRLRLSSSFGSTPCMHQASTAAQMR 2712
>LOC_Os06g33450:12006.t03042:unspliced-genomic DNA binding protein, putative, expressed| Length = 6100 Score = 31.3 bits (62), Expect = 6.5 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -1 / -2 Query: 614 ASEFDTLTHKKKTSNLHASTKHCHIK 537 AS + L+ KKK++ HAS HC+I+ Sbjct: 1680 ASVYIPLSKKKKSNRTHASRHHCNIQ 1603
>LOC_Os12g44360:12012.t04102:unspliced-genomic sodium/hydrogen exchanger 7, putative, expressed| Length = 14116 Score = 25.4 bits (49), Expect(2) = 7.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 / -2 Query: 496 RTPGHFLSRSATVY 537 RTPG+F SR AT Y Sbjct: 6180 RTPGNFCSRFATGY 6139 Score = 22.6 bits (43), Expect(2) = 7.1 Identities = 7/14 (50%), Positives = 11/14 (78%) Frame = +3 / -2 Query: 372 SYSQRCTHIELPGC 413 SY+Q T++ +PGC Sbjct: 6306 SYNQGHTYMHVPGC 6265
>LOC_Os12g26044:12012.t004177:unspliced-genomic expressed protein| Length = 2377 Score = 29.9 bits (59), Expect(2) = 8.2 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +2 / -1 Query: 584 FCESMYQTPMPPQKKKK 634 F E+ TP+PPQKKKK Sbjct: 286 FFEAQIITPLPPQKKKK 236 Score = 21.7 bits (41), Expect(2) = 8.2 Identities = 7/12 (58%), Positives = 11/12 (91%) Frame = +2 / -1 Query: 194 VMMNIWRTWVLR 229 ++MNI +TW+LR Sbjct: 1420 MIMNIKQTWLLR 1385
>LOC_Os12g24170:12012.t02146:unspliced-genomic BGAL9, putative, expressed| Length = 20845 Score = 30.9 bits (61), Expect = 8.9 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +2 / -2 Query: 113 WKQRLSKGIWMAPCFHM 163 W+++LSK + PCFH+ Sbjct: 10563 WQEKLSKSVHFLPCFHL 10513
>LOC_Os11g46080:12011.t04133:unspliced-genomic NB-ARC domain containing protein, expressed| Length = 6850 Score = 30.9 bits (61), Expect = 8.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 / -1 Query: 303 LRQCSFFYAIMFELMYEARTMFLSYS 380 LRQ SFF+ F L Y +FL YS Sbjct: 3598 LRQYSFFFNFEFSLFYMDSRLFLQYS 3521
>LOC_Os11g37000:12011.t03244:unspliced-genomic dnaJ domain containing protein, expressed| Length = 4355 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -2 / +2 Query: 262 SHNPQIVICMSSQNPRSPYVHH 197 +H+P + +C SS+N +P HH Sbjct: 8 THSPHLCLCSSSKNLTTPTAHH 73
>LOC_Os08g29760:12008.t02729:unspliced-genomic expressed protein| Length = 7877 Score = 30.9 bits (61), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = -2 / -3 Query: 274 TPGMSHNPQIVICMSSQNPRSPYVHHYPLPRLLSCLRHMKTRCHPNSL 131 T + NP I + + +NP P P ++ T CHPNS+ Sbjct: 1722 TDDFASNPMIKVSIGMKNPPPPTPPILPNAAPMNPTNDPSTICHPNSI 1579
>LOC_Os06g37790:12006.t03474:unspliced-genomic hypothetical protein| Length = 3180 Score = 30.9 bits (61), Expect = 8.9 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -2 / +3 Query: 289 CPRPTTPGMSHNPQIVICMSSQNPRSPYVHHYPLP 185 C PT S +P VIC SS N S H PLP Sbjct: 219 CRLPTQRPPSPSPNPVICNSSFNNSSGSEHFAPLP 323
>LOC_Os06g35900:12006.t03287:unspliced-genomic brassinazole-resistant 1 protein, putative, expressed| Length = 3156 Score = 30.9 bits (61), Expect = 8.9 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -1 / -1 Query: 245 SDLHELAKPTFAICSSLPPSETVELSSPYENK 150 ++ E A+ A+ S + P+E VE +SP +NK Sbjct: 615 TETEEAAETQIAVASRIAPAEVVEGTSPNDNK 520
>LOC_Os06g28194:12006.t02522:unspliced-genomic phosphoglucomutase/phosphomannomutase family protein, putative,| expressed Length = 21531 Score = 30.9 bits (61), Expect = 8.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +2 / +1 Query: 164 AKTTQQSRKGVMMNIWRTWVLRAHANHYLWIMRHAWCCW 280 + TT SR V + V++ NH L I RH CW Sbjct: 13633 SSTTNTSRLPVFARVIVIGVIKNKKNHNLIICRHFMSCW 13749
>LOC_Os01g52490:12001.t04676:unspliced-genomic 40S ribosomal protein S24, putative, expressed| Length = 1837 Score = 30.9 bits (61), Expect = 8.9 Identities = 7/21 (33%), Positives = 11/21 (52%) Frame = +2 / +2 Query: 224 LRAHANHYLWIMRHAWCCWAW 286 ++ H + Y W+ H W W W Sbjct: 1535 VKTHLHLYYWLWEHCWV*WQW 1597
>LOC_Os01g10840:12001.t00957:unspliced-genomic shaggy-related protein kinase eta, putative, expressed| Length = 4186 Score = 30.9 bits (61), Expect = 8.9 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +2 / -1 Query: 251 WIMRHAWCCWAWTP 292 WIM H WC W+P Sbjct: 3823 WIMEHGWCNLRWSP 3782
>LOC_Os01g01780:12001.t00074:unspliced-genomic limonene cyclase like protein, putative, expressed| Length = 3239 Score = 30.9 bits (61), Expect = 8.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +3 / -2 Query: 105 EGHGNSAFQREFGWHLVFIWRRQLNSLG 188 EG G E GW LV +WRR+ G Sbjct: 298 EGSGGWEAAAESGWLLVLLWRREARRYG 215 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 309,268,962 Number of extensions: 5608465 Number of successful extensions: 22637 Number of sequences better than 10.0: 37 Length of query: 211 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 163 Effective length of database: 52,912,542 Effective search space: 8624744346 Effective search space used: 8624744346 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)