ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf94k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_624239.2| PREDICTED: Apis mellifera similar to Protein ph... 42 2.3
2ref|XM_369362.1| Magnaporthe grisea 70-15 chromosome III hypothe... 42 2.3
3gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosom... 42 2.3
4gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosom... 42 2.3
5gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosom... 42 2.3
6gb|AC134852.4| Mus musculus BAC clone RP24-248B6 from chromosome... 42 2.3
7gb|AC112909.4| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cance... 42 2.3
8gb|AY172977.1| Piromyces sp. E2 beta-glucosidase precursor (cel3... 42 2.3
9gb|AC079586.6| Homo sapiens BAC clone RP11-207G14 from 2, comple... 42 2.3
10emb|CU104668.1| Gorilla DNA sequence from clone CH255-469C9, com... 40 9.0
11emb|CT826389.8| Zebrafish DNA sequence from clone CH73-159H15 in... 40 9.0
12gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome 40 9.0
13gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 9.0
14gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, co... 40 9.0
15gb|AC102318.8| Mus musculus chromosome 7, clone RP24-447C20, com... 40 9.0
16gb|AC167167.3| Mus musculus chromosome 19, clone RP24-297I11, co... 40 9.0
17gb|AC152162.9| Mus musculus chromosome 19, clone RP23-457B18, co... 40 9.0
18gb|AC011592.5| Homo sapiens chromosome 3, clone RP11-42F12, comp... 40 9.0
19gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cance... 40 9.0
20dbj|AK087120.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 9.0
21dbj|AK086826.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 9.0
22emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on ch... 40 9.0
23emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L2... 40 9.0
24gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, comple... 40 9.0
25ref|XM_760110.1| Theileria parva strain Muguga hypothetical prot... 40 9.0
26gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 9.0
27gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 9.0

>ref|XM_624239.2| PREDICTED: Apis mellifera similar to Protein phosphatase D3
           CG8402-PA, isoform A (LOC551854), mRNA
          Length = 1544
 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 571 cttatttaaaaacagaatttt 591
           |||||||||||||||||||||
Sbjct: 259 cttatttaaaaacagaatttt 279



to top

>ref|XM_369362.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG06102.4) partial mRNA
          Length = 1245

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 21  aagaccgcttcccaaacccccaatt 45
           |||||||||||||||||||| ||||
Sbjct: 578 aagaccgcttcccaaaccccgaatt 602



to top

>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete sequence
          Length = 166529

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    ccaattgcttccaggaataaa 208
              |||||||||||||||||||||
Sbjct: 138653 ccaattgcttccaggaataaa 138633



to top

>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence
          Length = 183612

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    ctgctccatttccctccaaga 163
              |||||||||||||||||||||
Sbjct: 106549 ctgctccatttccctccaaga 106529



to top

>gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosome Y, complete sequence
          Length = 159604

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ccaattgcttccaggaataaa 208
             |||||||||||||||||||||
Sbjct: 92478 ccaattgcttccaggaataaa 92458



to top

>gb|AC134852.4| Mus musculus BAC clone RP24-248B6 from chromosome Y, complete sequence
          Length = 186637

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ccaattgcttccaggaataaa 208
             |||||||||||||||||||||
Sbjct: 21921 ccaattgcttccaggaataaa 21901



to top

>gb|AC112909.4| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114411

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 568   tatcttatttaaaaacagaat 588
             |||||||||||||||||||||
Sbjct: 29468 tatcttatttaaaaacagaat 29448



to top

>gb|AY172977.1| Piromyces sp. E2 beta-glucosidase precursor (cel3A) mRNA, complete
            cds
          Length = 2737

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  tcacgctggtatgccaggtgc 345
            |||||||||||||||||||||
Sbjct: 1532 tcacgctggtatgccaggtgc 1552



to top

>gb|AC079586.6| Homo sapiens BAC clone RP11-207G14 from 2, complete sequence
          Length = 148332

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 139   acccctgctccatttccctcc 159
             |||||||||||||||||||||
Sbjct: 39500 acccctgctccatttccctcc 39520



to top

>emb|CU104668.1| Gorilla DNA sequence from clone CH255-469C9, complete sequence
          Length = 184005

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    caagaccgcttcccaaacccccaa 43
             ||||||| ||||||||||||||||
Sbjct: 78440 caagacctcttcccaaacccccaa 78463



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     caagaccgcttcccaaacccccaa 43
              ||||||| ||||||||||||||||
Sbjct: 104902 caagacctcttcccaaacccccaa 104925



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     caagaccgcttcccaaacccccaa 43
              ||||||| ||||||||||||||||
Sbjct: 131381 caagacctcttcccaaacccccaa 131404



to top

>emb|CT826389.8| Zebrafish DNA sequence from clone CH73-159H15 in linkage group 4,
              complete sequence
          Length = 124788

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    agatttttctgtaaactatc 571
              ||||||||||||||||||||
Sbjct: 118048 agatttttctgtaaactatc 118029



to top

>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome
          Length = 4412446

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 438     tgtcagcgagccaccctctcccgt 461
               ||||| ||||||||||||||||||
Sbjct: 1987090 tgtcatcgagccaccctctcccgt 1987113



to top

>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cctgctccatttccctccaa 161
             ||||||||||||||||||||
Sbjct: 44017 cctgctccatttccctccaa 44036



to top

>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence
          Length = 211052

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 570  tcttatttaaaaacagaatt 589
            ||||||||||||||||||||
Sbjct: 2654 tcttatttaaaaacagaatt 2673



to top

>gb|AC102318.8| Mus musculus chromosome 7, clone RP24-447C20, complete sequence
          Length = 145005

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 570    tcttatttaaaaacagaatt 589
              ||||||||||||||||||||
Sbjct: 137267 tcttatttaaaaacagaatt 137286



to top

>gb|AC167167.3| Mus musculus chromosome 19, clone RP24-297I11, complete sequence
          Length = 116484

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   gttttcttttcccaaatatg 539
             ||||||||||||||||||||
Sbjct: 94857 gttttcttttcccaaatatg 94876



to top

>gb|AC152162.9| Mus musculus chromosome 19, clone RP23-457B18, complete sequence
          Length = 182365

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    gttttcttttcccaaatatg 539
              ||||||||||||||||||||
Sbjct: 137879 gttttcttttcccaaatatg 137860



to top

>gb|AC011592.5| Homo sapiens chromosome 3, clone RP11-42F12, complete sequence
          Length = 152132

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   ttttcccaaatatgtatttc 545
             ||||||||||||||||||||
Sbjct: 39516 ttttcccaaatatgtatttc 39535



to top

>gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128398

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    ttttcccaaatatgtatttc 545
              ||||||||||||||||||||
Sbjct: 124898 ttttcccaaatatgtatttc 124917



to top

>dbj|AK087120.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030028G18 product:unclassifiable, full
           insert sequence
          Length = 946

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 520 gttttcttttcccaaatatg 539
           ||||||||||||||||||||
Sbjct: 441 gttttcttttcccaaatatg 422



to top

>dbj|AK086826.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030003E18 product:unclassifiable, full
           insert sequence
          Length = 1802

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 520 gttttcttttcccaaatatg 539
           ||||||||||||||||||||
Sbjct: 814 gttttcttttcccaaatatg 795



to top

>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1,
             complete sequence
          Length = 97585

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   agccaccctctcccgtcagt 465
             ||||||||||||||||||||
Sbjct: 46518 agccaccctctcccgtcagt 46537



to top

>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the
              FOXA2 gene for forkhead box A2, a novel gene, the 5' end of
              the C20orf56 gene for chromosome 20 open reading frame 56,
              the 5' end of a novel gene and five CpG islands, complete
              sequence
          Length = 120869

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    cttatttaaaaacagaattt 590
              ||||||||||||||||||||
Sbjct: 118343 cttatttaaaaacagaattt 118324



to top

>gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, complete sequence
          Length = 176662

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 550    gaagatttttctgtaaacta 569
              ||||||||||||||||||||
Sbjct: 164628 gaagatttttctgtaaacta 164609



to top

>ref|XM_760110.1| Theileria parva strain Muguga hypothetical protein (TP02_0637)
            partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 565  aactatcttatttaaaaacagaat 588
            |||||||||||| |||||||||||
Sbjct: 1261 aactatcttattcaaaaacagaat 1284



to top

>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    cctgctccatttccctccaa 161
              ||||||||||||||||||||
Sbjct: 186320 cctgctccatttccctccaa 186301



to top

>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cctgctccatttccctccaa 161
             ||||||||||||||||||||
Sbjct: 99842 cctgctccatttccctccaa 99861


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 101,550,717
Number of extensions: 5396420
Number of successful extensions: 113425
Number of sequences better than 10.0: 27
Number of HSP's gapped: 113425
Number of HSP's successfully gapped: 29
Length of query: 610
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 588
Effective length of database: 18,508,616,841
Effective search space: 10883066702508
Effective search space used: 10883066702508
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top