Clone Name | FLbaf94k11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_624239.2| PREDICTED: Apis mellifera similar to Protein phosphatase D3 CG8402-PA, isoform A (LOC551854), mRNA Length = 1544 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 571 cttatttaaaaacagaatttt 591 ||||||||||||||||||||| Sbjct: 259 cttatttaaaaacagaatttt 279
>ref|XM_369362.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG06102.4) partial mRNA Length = 1245 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 aagaccgcttcccaaacccccaatt 45 |||||||||||||||||||| |||| Sbjct: 578 aagaccgcttcccaaaccccgaatt 602
>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete sequence Length = 166529 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccaattgcttccaggaataaa 208 ||||||||||||||||||||| Sbjct: 138653 ccaattgcttccaggaataaa 138633
>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence Length = 183612 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctgctccatttccctccaaga 163 ||||||||||||||||||||| Sbjct: 106549 ctgctccatttccctccaaga 106529
>gb|AC140203.2| Mus musculus BAC clone RP24-334J15 from chromosome Y, complete sequence Length = 159604 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccaattgcttccaggaataaa 208 ||||||||||||||||||||| Sbjct: 92478 ccaattgcttccaggaataaa 92458
>gb|AC134852.4| Mus musculus BAC clone RP24-248B6 from chromosome Y, complete sequence Length = 186637 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccaattgcttccaggaataaa 208 ||||||||||||||||||||| Sbjct: 21921 ccaattgcttccaggaataaa 21901
>gb|AC112909.4| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114411 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 tatcttatttaaaaacagaat 588 ||||||||||||||||||||| Sbjct: 29468 tatcttatttaaaaacagaat 29448
>gb|AY172977.1| Piromyces sp. E2 beta-glucosidase precursor (cel3A) mRNA, complete cds Length = 2737 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 tcacgctggtatgccaggtgc 345 ||||||||||||||||||||| Sbjct: 1532 tcacgctggtatgccaggtgc 1552
>gb|AC079586.6| Homo sapiens BAC clone RP11-207G14 from 2, complete sequence Length = 148332 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 acccctgctccatttccctcc 159 ||||||||||||||||||||| Sbjct: 39500 acccctgctccatttccctcc 39520
>emb|CU104668.1| Gorilla DNA sequence from clone CH255-469C9, complete sequence Length = 184005 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 caagaccgcttcccaaacccccaa 43 ||||||| |||||||||||||||| Sbjct: 78440 caagacctcttcccaaacccccaa 78463 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 caagaccgcttcccaaacccccaa 43 ||||||| |||||||||||||||| Sbjct: 104902 caagacctcttcccaaacccccaa 104925 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 caagaccgcttcccaaacccccaa 43 ||||||| |||||||||||||||| Sbjct: 131381 caagacctcttcccaaacccccaa 131404
>emb|CT826389.8| Zebrafish DNA sequence from clone CH73-159H15 in linkage group 4, complete sequence Length = 124788 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 agatttttctgtaaactatc 571 |||||||||||||||||||| Sbjct: 118048 agatttttctgtaaactatc 118029
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome Length = 4412446 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 tgtcagcgagccaccctctcccgt 461 ||||| |||||||||||||||||| Sbjct: 1987090 tgtcatcgagccaccctctcccgt 1987113
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cctgctccatttccctccaa 161 |||||||||||||||||||| Sbjct: 44017 cctgctccatttccctccaa 44036
>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence Length = 211052 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcttatttaaaaacagaatt 589 |||||||||||||||||||| Sbjct: 2654 tcttatttaaaaacagaatt 2673
>gb|AC102318.8| Mus musculus chromosome 7, clone RP24-447C20, complete sequence Length = 145005 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 tcttatttaaaaacagaatt 589 |||||||||||||||||||| Sbjct: 137267 tcttatttaaaaacagaatt 137286
>gb|AC167167.3| Mus musculus chromosome 19, clone RP24-297I11, complete sequence Length = 116484 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 gttttcttttcccaaatatg 539 |||||||||||||||||||| Sbjct: 94857 gttttcttttcccaaatatg 94876
>gb|AC152162.9| Mus musculus chromosome 19, clone RP23-457B18, complete sequence Length = 182365 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttttcttttcccaaatatg 539 |||||||||||||||||||| Sbjct: 137879 gttttcttttcccaaatatg 137860
>gb|AC011592.5| Homo sapiens chromosome 3, clone RP11-42F12, complete sequence Length = 152132 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ttttcccaaatatgtatttc 545 |||||||||||||||||||| Sbjct: 39516 ttttcccaaatatgtatttc 39535
>gb|AC117397.2| Homo sapiens 3 BAC RP11-92D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128398 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ttttcccaaatatgtatttc 545 |||||||||||||||||||| Sbjct: 124898 ttttcccaaatatgtatttc 124917
>dbj|AK087120.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030028G18 product:unclassifiable, full insert sequence Length = 946 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttttcttttcccaaatatg 539 |||||||||||||||||||| Sbjct: 441 gttttcttttcccaaatatg 422
>dbj|AK086826.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030003E18 product:unclassifiable, full insert sequence Length = 1802 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 gttttcttttcccaaatatg 539 |||||||||||||||||||| Sbjct: 814 gttttcttttcccaaatatg 795
>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1, complete sequence Length = 97585 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 agccaccctctcccgtcagt 465 |||||||||||||||||||| Sbjct: 46518 agccaccctctcccgtcagt 46537
>emb|AL121722.9|HSJ788L20 Human DNA sequence from clone RP4-788L20 on chromosome 20 Contains the FOXA2 gene for forkhead box A2, a novel gene, the 5' end of the C20orf56 gene for chromosome 20 open reading frame 56, the 5' end of a novel gene and five CpG islands, complete sequence Length = 120869 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 cttatttaaaaacagaattt 590 |||||||||||||||||||| Sbjct: 118343 cttatttaaaaacagaattt 118324
>gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, complete sequence Length = 176662 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 gaagatttttctgtaaacta 569 |||||||||||||||||||| Sbjct: 164628 gaagatttttctgtaaacta 164609
>ref|XM_760110.1| Theileria parva strain Muguga hypothetical protein (TP02_0637) partial mRNA Length = 1614 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 aactatcttatttaaaaacagaat 588 |||||||||||| ||||||||||| Sbjct: 1261 aactatcttattcaaaaacagaat 1284
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence Length = 195874 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cctgctccatttccctccaa 161 |||||||||||||||||||| Sbjct: 186320 cctgctccatttccctccaa 186301
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cctgctccatttccctccaa 161 |||||||||||||||||||| Sbjct: 99842 cctgctccatttccctccaa 99861 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 101,550,717 Number of extensions: 5396420 Number of successful extensions: 113425 Number of sequences better than 10.0: 27 Number of HSP's gapped: 113425 Number of HSP's successfully gapped: 29 Length of query: 610 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 588 Effective length of database: 18,508,616,841 Effective search space: 10883066702508 Effective search space used: 10883066702508 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)