Clone Information

BLAST Search Result

Clone Name	FLbaf94j20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LOC_Os04g59494:12004.t05406:unspliced-genomic transportin-2,...	209	3e-53
2	LOC_Os08g27090:12008.t02473:unspliced-genomic 30S ribosomal ...	45	6e-04
3	LOC_Os12g29160:12012.t02626:unspliced-genomic fibroin heavy ...	27	0.28
4	LOC_Os01g42470:12001.t03764:unspliced-genomic pre-mRNA-splic...	29	0.53
5	LOC_Os01g10860:12001.t00959:unspliced-genomic expressed protein	28	0.53
6	LOC_Os12g42860:12012.t03959:unspliced-genomic cupin, RmlC-ty...	27	0.72
7	LOC_Os05g18170:12005.t01585:unspliced-genomic retrotransposo...	35	0.90
8	LOC_Os03g51840:12003.t04513:unspliced-genomic GTP binding pr...	35	0.90
9	LOC_Os01g10030:12001.t06790:unspliced-genomic expressed protein	35	0.90
10	LOC_Os11g32950:12011.t02891:unspliced-genomic conserved hypo...	34	1.2
11	LOC_Os01g73680:12001.t06648:unspliced-genomic aspartyl amino...	29	1.6
12	LOC_Os07g47280:12007.t04364:unspliced-genomic DNA polymerase...	34	1.7
13	LOC_Os04g36720:12004.t03293:unspliced-genomic ferric reducta...	34	1.7
14	LOC_Os12g36810:12012.t03361:unspliced-genomic polygalacturon...	27	1.7
15	LOC_Os07g02090:12007.t00102:unspliced-genomic hydrolase/ pro...	28	2.3
16	LOC_Os06g35200:12006.t03217:unspliced-genomic receptor-like ...	33	2.3
17	LOC_Os05g15600:12005.t01331:unspliced-genomic hypothetical p...	33	2.3
18	LOC_Os02g47410:12002.t04325:unspliced-genomic ATP binding pr...	33	2.3
19	LOC_Os01g18810:12001.t01672:unspliced-genomic hypothetical p...	33	2.3
20	LOC_Os06g04840:12006.t00373:unspliced-genomic leucine-rich r...	28	2.8
21	LOC_Os10g10450:12010.t00852:unspliced-genomic retrotransposo...	33	3.2
22	LOC_Os03g22200:12003.t01972:unspliced-genomic cytochrome c o...	33	3.2
23	LOC_Os02g24890:12002.t02186:unspliced-genomic retrotransposo...	33	3.2
24	LOC_Os11g22170:12011.t01887:unspliced-genomic retrotransposo...	32	4.4
25	LOC_Os11g20090:12011.t01779:unspliced-genomic O-methyltransf...	32	4.4
26	LOC_Os07g24390:12007.t02136:unspliced-genomic retrotransposo...	32	4.4
27	LOC_Os06g48430:12006.t04529:unspliced-genomic retrotransposo...	32	4.4
28	LOC_Os06g11130:12006.t00990:unspliced-genomic gibberellin re...	32	4.4
29	LOC_Os03g43900:12003.t03780:unspliced-genomic phosphatidylin...	32	4.4
30	LOC_Os01g12560:12001.t01123:unspliced-genomic 3-methyl-2-oxo...	32	4.4
31	LOC_Os03g35710:12003.t03054:unspliced-genomic retrotransposo...	25	5.5
32	LOC_Os12g29580:12012.t02667:unspliced-genomic protein kinase...	25	5.5
33	LOC_Os09g29850:12009.t02663:unspliced-genomic expressed protein	24	5.9
34	LOC_Os10g31810:12010.t02504:unspliced-genomic expressed protein	32	6.0
35	LOC_Os05g38820:12005.t03424:unspliced-genomic nuclear transc...	32	6.0
36	LOC_Os03g53930:12003.t04707:unspliced-genomic expressed protein	32	6.0
37	LOC_Os02g42780:12002.t03863:unspliced-genomic lectin recepto...	32	6.0
38	LOC_Os04g49430:12004.t04458:unspliced-genomic ZR1 protein, p...	26	7.2
39	LOC_Os07g12820:12007.t01153:unspliced-genomic B3 DNA binding...	27	7.7
40	LOC_Os02g17340:12002.t01527:unspliced-genomic hypothetical p...	27	8.3
41	LOC_Os12g11050:12012.t00982:unspliced-genomic hypothetical p...	31	8.3
42	LOC_Os11g38260:12011.t03368:unspliced-genomic harpin binding...	31	8.3
43	LOC_Os10g36229:12010.t02907:unspliced-genomic mov34/MPN/PAD-...	31	8.3
44	LOC_Os08g20359:12008.t01854:unspliced-genomic retrotransposo...	31	8.3
45	LOC_Os02g30140:12002.t02707:unspliced-genomic expressed protein	31	8.3
46	LOC_Os08g40280:12008.t03759:unspliced-genomic lectin-like pr...	29	8.9
47	LOC_Os09g12570:12009.t01046:unspliced-genomic ubiquitin-conj...	27	9.0

>LOC_Os04g59494:12004.t05406:unspliced-genomic transportin-2, putative, expressed|
          Length = 13425
 Score =  209 bits (450), Expect = 3e-53
 Identities = 89/112 (79%), Positives = 97/112 (86%)
 Frame = +2 / +1

                                                                         
Query: 146   VRIEAAKQLTGRVVTTKANKTVGVEVVRLKQHPKYHRREKIKKKYQAHDPDNQFKVGDVV 325
             +RI+AAKQLTGRVVTTKA+KTVGVEVVRL  HPKY RRE+IKKKYQAHDPDNQFKVGDVV
Sbjct: 12628 LRIQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVV 12807

                                                                 
Query: 326   ELVRSRPISKTKHFLAVPVPPRDTRRKAQLLPPLESQSGQESAADETAT*PS 481
             EL RSRPISKTKHFLAVP+PPRDTRRK+QLLPPL+SQS  +         PS
Sbjct: 12808 ELRRSRPISKTKHFLAVPLPPRDTRRKSQLLPPLQSQSQSQDQDQPPTPPPS 12963



 Score =  148 bits (317), Expect = 6e-35
 Identities = 66/93 (70%), Positives = 69/93 (74%)
 Frame = -3 / -2

                                                                         
Query: 420   GRSWALRRVSRGGTGTARKCLVLEMGRERTSSTTSPTLNWLSGSCAWYFFLIFSRRWYLG 241
             GRSW LRRVSRGG GTARKCLVLEMGRER SSTTSPTLNWLSGSCAWYFFL+ SRR Y G
Sbjct: 12902 GRSWDLRRVSRGGRGTARKCLVLEMGRERRSSTTSPTLNWLSGSCAWYFFLMRSRRLYFG 12723

                                              
Query: 240   CCLSRXXXXXXXXXXXXXXTRPVSCFAASILTS 142
                SR              TRPVSCFAA IL++
Sbjct: 12722 *GASRTTSTPTVLSAFVVTTRPVSCFAAWILSA 12624

to top

>LOC_Os08g27090:12008.t02473:unspliced-genomic 30S ribosomal protein S17, putative, expressed|
          Length = 4215

 Score = 45.1 bits (92), Expect = 6e-04
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +2 / +1

                                                                 
Query: 164 KQLTGRVVTTKANKTVGVEVVRLKQHPKYHRREKIKKKYQAHDPDNQFKVGDVV 325
           K + G VV+ K  K+V V V RL  H  Y+R  K   K+ AHD      +GD V
Sbjct: 208 KPVVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDETEDCNIGDRV 369

to top

>LOC_Os12g29160:12012.t02626:unspliced-genomic fibroin heavy chain precursor, putative|
          Length = 4576

 Score = 27.2 bits (53), Expect(2) = 0.28
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3 / -3

                              
Query: 453 PPTRPLPSLVMHPAFAFPH 509
           PPT P P     PA A PH
Sbjct: 887 PPTSPAPFTAFQPARACPH 831



 Score = 26.3 bits (51), Expect(2) = 0.28
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3 / -1

                           
Query: 426 SSHSPDKNPPPTRPLP 473
           SS S  + PPPT PLP
Sbjct: 967 SSSSSRQQPPPTLPLP 920

to top

>LOC_Os01g42470:12001.t03764:unspliced-genomic pre-mRNA-splicing factor cwc24, putative, expressed|
          Length = 3160

 Score = 29.0 bits (57), Expect(2) = 0.53
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2 / +1

                                              
Query: 335 RSRPISKTKHFLAVPVPPRDTRRKAQLLPPLESQS 439
           RS P + T+     P PPR +    + LPP  + S
Sbjct: 295 RSSPSATTRSTTTTPSPPRSSPSSVRALPPFPTFS 399



 Score = 23.5 bits (45), Expect(2) = 0.53
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3 / +2

                             
Query: 456 PTRPLPSLVMHPAFAFPH 509
           P++P P   +HP  + PH
Sbjct: 383 PSQPFPCSSIHPPSSAPH 436

to top

>LOC_Os01g10860:12001.t00959:unspliced-genomic expressed protein|
          Length = 2926

 Score = 28.1 bits (55), Expect(2) = 0.53
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2 / +3

                                        
Query: 341 RPISKTKHFLAVPVPPRDTRRKAQLLPPL 427
           R  SK K   A P PPR     A   PPL
Sbjct: 39  RDASKPKTLAATPWPPRSAPPSAAATPPL 125



 Score = 24.4 bits (47), Expect(2) = 0.53
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3 / +2

                      
Query: 435 SPDKNPPPTRP 467
           SPD+NP PT P
Sbjct: 224 SPDQNPSPTPP 256

to top

>LOC_Os12g42860:12012.t03959:unspliced-genomic cupin, RmlC-type, putative, expressed|
          Length = 2711

 Score = 26.7 bits (52), Expect(2) = 0.72
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3 / -2

                             
Query: 438 PDKNPPPTRPLPSLVMHP 491
           P + PPP  PLP+ +  P
Sbjct: 253 PSRPPPPLDPLPTFIKDP 200



 Score = 25.4 bits (49), Expect(2) = 0.72
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2 / -1

                                        
Query: 341 RPISKTKHFLAVPVPPRDTRRKAQLLPPL 427
           +P+ + +  L  P PP  +RR+ +  PPL
Sbjct: 395 QPLQRRRLRLHPPAPPGPSRRRHRHPPPL 309

to top

>LOC_Os05g18170:12005.t01585:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2364

 Score = 34.5 bits (69), Expect = 0.90
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3 / -2

                                    
Query: 420  LRSSHSPDKNPPPTRPLPSLVMHP 491
            LR SH+P  +PPP RP  SL   P
Sbjct: 1007 LRGSHAPGHHPPPARPPSSLSREP 936

to top

>LOC_Os03g51840:12003.t04513:unspliced-genomic GTP binding protein, putative, expressed|
          Length = 2056

 Score = 34.5 bits (69), Expect = 0.90
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3 / +2

                                       
Query: 423 RSSHSPDKNPPPTRPLPSLVMHPAFAFP 506
           RSS SP   PPP RPLPS    P  + P
Sbjct: 302 RSSPSPSPAPPPRRPLPSSRRSPPSSSP 385

to top

>LOC_Os01g10030:12001.t06790:unspliced-genomic expressed protein|
          Length = 2923

 Score = 34.5 bits (69), Expect = 0.90
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3 / -3

                                       
Query: 369  RKCLVLEMGRERTSSTTSPTLNWLSGS 289
            R+  + EMGRER   TT+PT  W+ GS
Sbjct: 2609 RRPTLEEMGRERE*RTTNPTNRWMDGS 2529

to top

>LOC_Os11g32950:12011.t02891:unspliced-genomic conserved hypothetical protein|
          Length = 882

 Score = 34.1 bits (68), Expect = 1.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2 / -3

                                               
Query: 109 GARREVELGEWRREGGAQQHLRLGLGLASFSRGGGG 2
           G RR+   G WRR GG +   R G G     R GGG
Sbjct: 121 GGRRKGRGGWWRRGGGGRGRRRGGRGRGGGGRRGGG 14

to top

>LOC_Os01g73680:12001.t06648:unspliced-genomic aspartyl aminopeptidase, putative, expressed|
          Length = 6166

 Score = 28.6 bits (56), Expect(2) = 1.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2 / +1

                               
Query: 368 LAVPVPPRDTRRKAQLLPPL 427
           L +PVPPR +  + +L PPL
Sbjct: 160 LILPVPPRPSHHRHRLAPPL 219



 Score = 22.1 bits (42), Expect(2) = 1.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3 / +3

                        
Query: 438 PDKNPPPTRPLPS 476
           P   PPP RPL S
Sbjct: 243 PKMPPPPPRPLSS 281

to top

>LOC_Os07g47280:12007.t04364:unspliced-genomic DNA polymerase zeta catalytic subunit, putative, expressed|
          Length = 2008

 Score = 33.6 bits (67), Expect = 1.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2 / -1

                               
Query: 109 GARREVELGEWRREGGAQQH 50
           G   EVE G WRREGG + H
Sbjct: 262 GGEPEVERGGWRREGGREMH 203

to top

>LOC_Os04g36720:12004.t03293:unspliced-genomic ferric reductase-like transmembrane component, putative, expressed|
          Length = 4345

 Score = 33.6 bits (67), Expect = 1.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3 / +2

                                         
Query: 345  GRERTSSTTSPTLNWLSGSCAWYFFLIFS 259
            GR  +SS+++PT +  S SC+W+F L  S
Sbjct: 2231 GRHTSSSSSTPTSST*SSSCSWHFTLATS 2317

to top

>LOC_Os12g36810:12012.t03361:unspliced-genomic polygalacturonase, putative, expressed|
          Length = 3484

 Score = 27.2 bits (53), Expect(2) = 1.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3 / -1

                         
Query: 432 HSPDKNPPPTRPLP 473
           HSP + PPP  PLP
Sbjct: 256 HSPPQPPPPPPPLP 215



 Score = 23.5 bits (45), Expect(2) = 1.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2 / -2

                          
Query: 377 PVPPRDTRRKAQLLP 421
           P PPR  RR+  LLP
Sbjct: 300 PRPPRTPRRRRLLLP 256

to top

>LOC_Os07g02090:12007.t00102:unspliced-genomic hydrolase/ protein serine/threonine phosphatase, putative,|
           expressed
          Length = 4500

 Score = 28.1 bits (55), Expect(2) = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2 / +1

                                         
Query: 335 RSRPISKTKHFLAVPVPPRDTRRKAQLLPP 424
           R+ P +  +   A+PVPP    R+  LLPP
Sbjct: 322 RAHPPAPPQPARALPVPPLPLAREGVLLPP 411



 Score = 22.1 bits (42), Expect(2) = 2.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3 / +1

                         
Query: 432 HSPDKNPPPTRPLP 473
           H P + P P RP P
Sbjct: 412 HRPRREPAPPRPPP 453

to top

>LOC_Os06g35200:12006.t03217:unspliced-genomic receptor-like kinase, putative, expressed|
          Length = 2856

 Score = 33.1 bits (66), Expect = 2.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3 / +1

                                          
Query: 318  SPTLNWLSGSCAWYFFLIFSRRWYLGCCLS 229
            S  L W +G C W    + S  W  GCC++
Sbjct: 988  SSRLRWCAGWCPWPCCSVSSGAWRAGCCVA 1077

to top

>LOC_Os05g15600:12005.t01331:unspliced-genomic hypothetical protein|
          Length = 973

 Score = 33.1 bits (66), Expect = 2.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3 / -3

                                                        
Query: 750 SIIITVPGITKTDNKYPKDASIKYSSTRLTFAAGRRKKIQISVPS 616
           S++ +V G+T T+    +D++I  SST  + +A R      S+P+
Sbjct: 272 SVVASVLGVTGTNRSVRRDSAITSSSTEQSSSASRSSSAPRSIPT 138

to top

>LOC_Os02g47410:12002.t04325:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 8675

 Score = 33.1 bits (66), Expect = 2.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3 / +3

                                                           
Query: 417 RSWALRRVSRGGTGTARKCLVLEMGRERTSSTTSPTLNWLSGSCAWYF 274
           RS+    + R GTG  R+C V  MG     +T++P+   L  SC + F
Sbjct: 618 RSFRSLLLRRPGTGRGRRCPVDAMGLPPAQATSAPSGRGLYVSCTFPF 761

to top

>LOC_Os01g18810:12001.t01672:unspliced-genomic hypothetical protein|
          Length = 2151

 Score = 33.1 bits (66), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2 / +1

                                                 
Query: 311  VGDVVELVRSRPISKTKHFLAVPVPPRDTRRKAQLLP 421
            VGDV E+  +   S +   L  P PP+  RR  QL P
Sbjct: 2026 VGDVAEMTMAAEASSSSPPLPPPPPPQPRRRPLQLFP 2136

to top

>LOC_Os06g04840:12006.t00373:unspliced-genomic leucine-rich repeat receptor protein kinase EXS precursor,|
           putative, expressed
          Length = 4299

 Score = 28.1 bits (55), Expect(2) = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3 / +2

                                   
Query: 429 SHSPDKNPPPTRPLPSLVMHPAFA 500
           ++ P   PPP RPLP    +P F+
Sbjct: 293 TNQPAFPPPPPRPLPLFPRYPRFS 364



 Score = 26.7 bits (52), Expect(2) = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2 / +3

                                     
Query: 338 SRPISKTKHFLAVPVPPRDTRRKAQL 415
           S P+  ++H  A+  PP  TRR+ QL
Sbjct: 18  SSPLPFSRHGRAISRPPEWTRRRRQL 95

to top

>LOC_Os10g10450:12010.t00852:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 3868

 Score = 32.7 bits (65), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2 / +3

                                    
Query: 76  RREGGAQQHLRLGLGLASFSRGGGG 2
           R EGG +  + LGLGL    +GGGG
Sbjct: 366 REEGGGRPAIGLGLGLRPAQQGGGG 440

to top

>LOC_Os03g22200:12003.t01972:unspliced-genomic cytochrome c oxidoreductase, putative, expressed|
          Length = 2215

 Score = 32.7 bits (65), Expect = 3.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2 / -2

                                       
Query: 377  PVPPRDTRRKAQLLPPLESQSGQESAA 457
            P PPR  RR+ +L PP  S SG    A
Sbjct: 1755 PAPPRRPRRRRRLSPPASSSSGTPCTA 1675

to top

>LOC_Os02g24890:12002.t02186:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 4313

 Score = 32.7 bits (65), Expect = 3.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3 / -1

                                                           
Query: 417  RSWALRRVSRGGTGTARKCLVLEMGRERTSSTTSPTLNWLSGSCAWY 277
            RS  +   S  G G+ R   +L +  +R SS     LNW +    WY
Sbjct: 3980 RSLVVNAHSPSGYGSLRDMFILSICNDRHSSLLWHNLNWANPLAVWY 3840

to top

>LOC_Os11g22170:12011.t01887:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 1091

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3 / +3

                                         
Query: 372 ARKCLVLEMGRERTSSTTSPTLNWLSGSCA 283
           AR C  L + RE    +T+  ++WL+G+CA
Sbjct: 750 ARVCKELRVPREDPEESTAGYISWLNGACA 839

to top

>LOC_Os11g20090:12011.t01779:unspliced-genomic O-methyltransferase ZRP4, putative, expressed|
          Length = 4660

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3 / +3

                                                   
Query: 420 GRSWALRRVSRGGTGTARKCLVLEMGRERTSSTTSPTLNW 301
           GR+W  R   R  T TAR+C    +     SST S T  W
Sbjct: 486 GRTWRRRSRPRSRTCTARRCSTRALRCWTRSSTPSSTKAW 605

to top

>LOC_Os07g24390:12007.t02136:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 3658

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3 / -2

                              
Query: 423 RSSHSPDKNPPPTRPLPSL 479
           R SH+P + PPP RP  SL
Sbjct: 645 RGSHAPSRRPPPARPPSSL 589

to top

>LOC_Os06g48430:12006.t04529:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 6548

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2 / +1

                                        
Query: 88  LGEWRREGGAQQHLRLGLGLASFSRGGGG 2
           +G+ RREGG +    LGLGL    + GGG
Sbjct: 553 VGDPRREGGGRPAAGLGLGLRPAQQRGGG 639

to top

>LOC_Os06g11130:12006.t00990:unspliced-genomic gibberellin receptor GID1L2, putative, expressed|
          Length = 1545

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2 / -3

                                                 
Query: 344 PISKTKHFLAVPVPPRDTRRKAQLLPPLESQSGQESAA 457
           P+S+++ F A     R    +A L+PP  S+ G +S +
Sbjct: 955 PLSRSESFSATQTSTRSAATRAALMPPAASEKGLDSGS 842

to top

>LOC_Os03g43900:12003.t03780:unspliced-genomic phosphatidylinositol N-acetylglucosaminyltransferase subunit P,|
           putative, expressed
          Length = 4631

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3 / +3

                                  
Query: 426 SSHSPDKNPPPTRPLPSLVMHPA 494
           SS SP   PPP  P P++ +HPA
Sbjct: 36  SSLSPCAQPPPPPPAPAIPIHPA 104

to top

>LOC_Os01g12560:12001.t01123:unspliced-genomic 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative,|
           expressed
          Length = 2441

 Score = 32.2 bits (64), Expect = 4.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3 / -2

                                    
Query: 426 SSHSPDKNPPPTRPLPSLVMHPAFA 500
           SS SP  +PPP  PLP    HPA A
Sbjct: 202 SSPSPAASPPPPPPLPPPPPHPAAA 128

to top

>LOC_Os03g35710:12003.t03054:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4473

 Score = 24.9 bits (48), Expect(2) = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3 / -1

                           
Query: 447  NPPPTRPLPSLVMHP 491
            +PPP+ PLP  V  P
Sbjct: 1167 SPPPSSPLPPAVSRP 1123



 Score = 24.0 bits (46), Expect(2) = 5.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2 / -3

                            
Query: 362  HFLAVPVPPRDTRRKA 409
            H  AVPVPPR   R A
Sbjct: 1342 HRAAVPVPPRRRSRAA 1295

to top

>LOC_Os12g29580:12012.t02667:unspliced-genomic protein kinase PVPK-1, putative, expressed|
          Length = 4363

 Score = 25.4 bits (49), Expect(2) = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3 / -2

                              
Query: 435 SPDKNPPPTRPLPSLVMHP 491
           SP   P P R  PSL  HP
Sbjct: 327 SPQPPPDPARTHPSLPSHP 271



 Score = 23.5 bits (45), Expect(2) = 5.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2 / -2

                                 
Query: 377 PVPPRDTRRKAQLLPPLESQSG 442
           P P    RR  +L PP    SG
Sbjct: 411 PTPTSQIRRGGELRPPARPHSG 346

to top

>LOC_Os09g29850:12009.t02663:unspliced-genomic expressed protein|
          Length = 2323

 Score = 24.4 bits (47), Expect(3) = 5.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1 / +1

                      
Query: 82  HPAPPLAEPQC 114
           HP PP+++P C
Sbjct: 313 HPFPPMSKPSC 345



 Score = 24.4 bits (47), Expect(3) = 5.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1 / +1

                    
Query: 715  CFCNPWHS 738
            C+C PWHS
Sbjct: 2245 CWCAPWHS 2268



 Score = 22.1 bits (42), Expect(3) = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3 / +2

                    
Query: 450 PPPTRPLPS 476
           PPP RP+P+
Sbjct: 872 PPPIRPMPA 898

to top

>LOC_Os10g31810:12010.t02504:unspliced-genomic expressed protein|
          Length = 2364

 Score = 31.8 bits (63), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3 / +1

                                     
Query: 432 HSPDKNPPPTRPLPSLVMHPAFAFPH 509
           H P + P P RP P  ++ PA   PH
Sbjct: 319 HPPRRGPQPRRPAPPPLIAPAHRVPH 396

to top

>LOC_Os05g38820:12005.t03424:unspliced-genomic nuclear transcription factor Y subunit B-3, putative, expressed|
          Length = 3990

 Score = 31.8 bits (63), Expect = 6.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2 / -3

                         
Query: 103 RREVELGEWRREGG 62
           RRE E+G WRREGG
Sbjct: 73  RREGEIGRWRREGG 32

to top

>LOC_Os03g53930:12003.t04707:unspliced-genomic expressed protein|
          Length = 1222

 Score = 31.8 bits (63), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3 / -2

                                       
Query: 426 SSHSPDKNPPPTRPLPSLVMHPAFAFPH 509
           SS +P ++ PP  P P L   PA A PH
Sbjct: 426 SSSTPPRSSPPPAPPPPLPRTPAAAAPH 343

to top

>LOC_Os02g42780:12002.t03863:unspliced-genomic lectin receptor-type protein kinase, putative, expressed|
          Length = 2128

 Score = 31.8 bits (63), Expect = 6.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2 / +2

                                               
Query: 338 SRPISKTKHFLAVPVPPRDTRRKAQLLPPLESQSGQ 445
           SRP SKTK   A P PP  +R     LP     +GQ
Sbjct: 740 SRP*SKTKPTSASPRPPASSRAATTCLPGASRWTGQ 847

to top

>LOC_Os04g49430:12004.t04458:unspliced-genomic ZR1 protein, putative|
          Length = 5024

 Score = 26.3 bits (51), Expect(2) = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3 / +1

                            
Query: 600 ITHQYHLALKFVSFFFF 650
           ITHQ H+AL+   F FF
Sbjct: 313 ITHQIHVALRVEEF*FF 363



 Score = 22.1 bits (42), Expect(2) = 7.2
 Identities = 7/24 (29%), Positives = 10/24 (41%)
 Frame = +1 / +1

                                   
Query: 697 FGVFIICFCNPWHSXXXXXQSKPK 768
           F   + CFC P H       + P+
Sbjct: 364 FFFLLFCFCYPGHCCSEEGSTSPE 435

to top

>LOC_Os07g12820:12007.t01153:unspliced-genomic B3 DNA binding domain containing protein|
          Length = 947

 Score = 26.7 bits (52), Expect(2) = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3 / +1

                                
Query: 600 ITHQYHLALKFVSFFFFLQQR 662
           IT    L++KF++FFFF  ++
Sbjct: 652 ITFNEILSMKFINFFFFYSEK 714



 Score = 24.4 bits (47), Expect(2) = 7.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2 / +1

                                              
Query: 326 ELVRSRPISKTKHFLAVPVPPRDTRRKAQLLPPLE 430
           ++ R R +S T H L     P   R    LLP L+
Sbjct: 379 QIKRPRHLSITNHLLHQAFQPNQLRLVIHLLPTLK 483

to top

>LOC_Os02g17340:12002.t01527:unspliced-genomic hypothetical protein|
          Length = 1999

 Score = 27.2 bits (53), Expect(2) = 8.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2 / -3

                                             
Query: 344  PISKTKHFLAVPVPPRDTRRKAQLLPPLESQSG 442
            P S   H  + P P   T R +  LPP  S  G
Sbjct: 1673 PSSSPPHHSSSPAPAPATHRHSSPLPPSSSSGG 1575



 Score = 24.9 bits (48), Expect(2) = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3 / -2

                                
Query: 417  FLRSSHSPDKNPPPTRPLPS 476
            FL S  +   +PPPTR  P+
Sbjct: 1416 FLASHRASSGDPPPTRSCPN 1357

to top

>LOC_Os12g11050:12012.t00982:unspliced-genomic hypothetical protein|
          Length = 1771

 Score = 31.3 bits (62), Expect = 8.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3 / +2

                          
Query: 432 HSPDKNPPPTRPLPS 476
           HSPD++ PP  PLPS
Sbjct: 719 HSPDRSTPPPHPLPS 763

to top

>LOC_Os11g38260:12011.t03368:unspliced-genomic harpin binding protein 1, putative, expressed|
          Length = 1873

 Score = 31.3 bits (62), Expect = 8.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2 / +3

                                           
Query: 100 REVELGEWRREGGAQQHLRLGLGLASFSRGGG 5
           RE  +G W +EG A  HLR G G       GG
Sbjct: 324 REAVVGGWCQEGAAAVHLRHGRGAVGRGLRGG 419

to top

>LOC_Os10g36229:12010.t02907:unspliced-genomic mov34/MPN/PAD-1 family protein|
          Length = 9801

 Score = 31.3 bits (62), Expect = 8.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3 / -3

                             
Query: 423  RSSHSPDKNPPPTRPLP 473
            RS+ SP  +PPPT PLP
Sbjct: 3106 RSATSPSPSPPPTSPLP 3056

to top

>LOC_Os08g20359:12008.t01854:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 3673

 Score = 31.3 bits (62), Expect = 8.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2 / +3

                                    
Query: 76  RREGGAQQHLRLGLGLASFSRGGGG 2
           R EGG +    LGLGL    +GGGG
Sbjct: 885 REEGGGRPATGLGLGLRPAQQGGGG 959

to top

>LOC_Os02g30140:12002.t02707:unspliced-genomic expressed protein|
          Length = 4058

 Score = 31.3 bits (62), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2 / +2

                                         
Query: 335 RSRPISKTKHFLAVPVPPRDTRRKAQLLPP 424
           R RP   ++   A P PPR  R +  LLPP
Sbjct: 65  RRRPWPTSRRTSATPTPPRPPRPRPLLLPP 154

to top

>LOC_Os08g40280:12008.t03759:unspliced-genomic lectin-like protein kinase, putative, expressed|
          Length = 4298

 Score = 29.5 bits (58), Expect(2) = 8.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2 / +3

                                           
Query: 94   VELGEWRREGGAQQHLRLGLGLASFSRGGGG 2
            VE  +WR   G + H     G A   RGGGG
Sbjct: 3099 VEPRQWRAAAGVRVHAEREPGPAPVRRGGGG 3191



 Score = 23.5 bits (45), Expect(2) = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3 / +3

                        
Query: 270  LIFSRRWYLGCC 235
            L+FS  W+LG C
Sbjct: 2775 LLFSPMWHLGAC 2810

to top

>LOC_Os09g12570:12009.t01046:unspliced-genomic ubiquitin-conjugating enzyme spm2, putative, expressed|
          Length = 3073

 Score = 26.7 bits (52), Expect(2) = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3 / +2

                                          
Query: 633  VSFFFFLQQRLILYYCT*Y*HLWGIYYLFL 722
            V FFFFLQ+ +I+Y  T +*+   I   +L
Sbjct: 1514 VLFFFFLQKIVIIYKSTKF*NWESILPFYL 1603



 Score = 25.8 bits (50), Expect(2) = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3 / +2

                              
Query: 450 PPPTRPLPSLVMHPAFAFP 506
           PPP  PLPS +  P+ + P
Sbjct: 32  PPPPPPLPSSIPKPSSSSP 88


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 180,999,545
Number of extensions: 2387261
Number of successful extensions: 19673
Number of sequences better than 10.0: 47
Length of query: 258
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 209
Effective length of database: 52,856,264
Effective search space: 11046959176
Effective search space used: 11046959176
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result