Clone Name | FLbaf94j20 |
---|---|
Clone Library Name | barley_pub |
>emb|CT832105.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA018N15, full insert sequence Length = 548 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 99 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 158 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 159 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 218 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 219 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 278 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 279 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 338 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 339 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 391
>emb|CT832104.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA015E12, full insert sequence Length = 573 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 127 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 186 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 187 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 246 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 247 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 306 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 307 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 366 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 367 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 419
>ref|NM_001060895.1| Oryza sativa (japonica cultivar-group) Os04g0691600 (Os04g0691600) mRNA, complete cds Length = 941 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 145 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 204 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 205 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 264 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 265 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 324 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 325 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 384 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 385 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 437
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 35416837 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 35416896 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 35416897 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 35416956 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 35416957 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 35417016 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 35417017 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 35417076 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 35417077 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 35417129
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 41640 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 41699 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 41700 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 41759 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 41760 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 41819 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 41820 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 41879 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 41880 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 41932
>dbj|AK099298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135M11, full insert sequence Length = 631 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 127 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 186 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 187 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 246 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 247 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 306 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 307 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 366 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 367 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 419
>dbj|AK059422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E01, full insert sequence Length = 596 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 161 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 220 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 221 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 280 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 281 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 340 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 341 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 400 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 401 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 453
>gb|AF095707.1|AF095707 Oryza sativa clone LS273 30S ribosomal protein S17 (rps17) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 966 Score = 343 bits (173), Expect = 6e-91 Identities = 263/293 (89%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 148 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 207 Query: 207 cggtgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaaga 266 ||||||||||||||||||||||||| | ||||| |||||| | || |||||| | Sbjct: 208 cggtgggggtggaggtggtgcggctggctcctcacccaaagtacaagcggcgggagcgca 267 Query: 267 tcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcg 326 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 268 tcaagaagaagtaccaggcgcacgacccggacaaccagttcaaggtcggcgacgtcgtcg 327 Query: 327 agctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgc 386 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 328 agctccgccgctcccgccccatctccaagaccaagcacttcctcgccgtccccctccccc 387 Query: 387 cccgcgacacccgccgcaaggcccagctccttcctccgctcgagtcacagtcc 439 | |||||||||||||||||| |||||||||| || || ||| |||| |||||| Sbjct: 388 cgcgcgacacccgccgcaagtcccagctcctcccgcctctccagtcccagtcc 440
>gb|BT016599.1| Zea mays clone Contig432 mRNA sequence Length = 656 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Plus Query: 150 ggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaagacgg 209 ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 142 ggatcgaggcggccaggcagctgacggggcgggtggtgacgaccaaggcgaacaagacgg 201 Query: 210 tgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaagatca 269 | ||||||||||||| ||| || | |||||||||||| | ||||||||| |||| Sbjct: 202 tcggggtggaggtggggcgcctggctccacaccccaagtacaagcgccgggagcgcatca 261 Query: 270 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 321 Query: 330 tcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgcccc 389 || | |||||| |||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 322 tccaaccctcccgtcccatctccaagaccaagcacttcctcgccatcccgctcccgcccc 381 Query: 390 gcgacacccgccgcaaggcccagctccttcctccgctcgagtc 432 ||||||| ||||||||| | |||||||| || |||||| |||| Sbjct: 382 gcgacactcgccgcaagtctcagctcctaccgccgctccagtc 424
>emb|Y19204.1|ZMA19204 Zea mays chloroplast mRNA for 30S ribosomal protein S17 Length = 643 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Plus Query: 150 ggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaagacgg 209 ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 114 ggatcgaggcggccaggcagctgacggggcgggtggtgacgaccaaggcggacaagacgg 173 Query: 210 tgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaagatca 269 | ||||||||||||||||| || | |||||||||||| | ||||||||| |||| Sbjct: 174 tcggggtggaggtggtgcgcctggctccacaccccaagtacaagcgccgggagcgcatca 233 Query: 270 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 293 Query: 330 tcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgcccc 389 || | |||||| |||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 294 tccaaccctcccgtcccatctccaagaccaagcacttcctcgccatcccgctcccgcccc 353 Query: 390 gcgacacccgccgcaaggcccagctccttcctccgctcgagtc 432 ||||||| ||||||||| | |||||||| || |||||| |||| Sbjct: 354 gcgacactcgccgcaagtctcagctcctaccgccgctccagtc 396
>gb|AY105768.1| Zea mays PCO117196 mRNA sequence Length = 695 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Plus Query: 150 ggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaagacgg 209 ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 140 ggatcgaggcggccaggcagctgacggggcgggtggtgacgaccaaggcggacaagacgg 199 Query: 210 tgggggtggaggtggtgcggctcaagcagcaccccaagtaccaccgccgggagaagatca 269 | ||||||||||||||||| || | |||||||||||| | ||||||||| |||| Sbjct: 200 tcggggtggaggtggtgcgcctggctccacaccccaagtacaagcgccgggagcgcatca 259 Query: 270 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 agaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtcgagc 319 Query: 330 tcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtcccgcccc 389 || | |||||| |||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 320 tccaaccctcccgtcccatctccaagaccaagcacttcctcgccatcccgctcccgcccc 379 Query: 390 gcgacacccgccgcaaggcccagctccttcctccgctcgagtc 432 ||||||| ||||||||| | |||||||| || |||||| |||| Sbjct: 380 gcgacactcgccgcaagtctcagctcctaccgccgctccagtc 422
>emb|CT837604.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN013I17, full insert sequence Length = 609 Score = 145 bits (73), Expect = 3e-31 Identities = 134/153 (87%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 266 atcaagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtc-gt 324 ||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||| || Sbjct: 275 atcaaaaagaaggaccaggcgagcgacccggacaaccagttcaaggtcggcgacgtctgt 334 Query: 325 cgagctcgtccgctcccgccccatctccaagaccaagcacttcctcgccgtccccgtccc 384 |||| || ||||||||||||||| ||||||||||||||||||||| |||||||| |||| Sbjct: 335 cgagatccaccgctcccgccccatttccaagaccaagcacttcctcaccgtccccctccc 394 Query: 385 gccccgcgacacccgccgcaaggcccagctcct 417 || | |||||||||||||| ||||| |||| Sbjct: 395 cccggcccacacccgccgcaagtcccagatcct 427 Score = 119 bits (60), Expect = 2e-23 Identities = 75/80 (93%) Strand = Plus / Plus Query: 147 tgaggatcgaggcggcgaagcagctgacggggcgggtggtgacgaccaaggccaacaaga 206 |||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 156 tgaggatccaggcggcgaagcagctgacggggcgtgtggtgacgacgaaggcggacaaga 215 Query: 207 cggtgggggtggaggtggtg 226 |||||||||||||||||||| Sbjct: 216 cggtgggggtggaggtggtg 235
>ref|NM_106634.2| Arabidopsis thaliana RPS17; structural constituent of ribosome (RPS17) mRNA, complete cds Length = 710 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 286 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 338
>gb|AY072539.1| Arabidopsis thaliana 30S ribosomal protein S17, chloroplast precursor (CS17) (At1g79850; F19K16.19) mRNA, complete cds Length = 526 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 256 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 308
>emb|Z54356.1|ATATHB10 A.thaliana Athb-10 gene Length = 5972 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 5177 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 5125
>emb|Z11151.1|ATRPCS17 Arabidopsis thaliana DNA for chloroplast ribosomal protein CS17 Length = 1586 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 797 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 849
>gb|AF386974.1|AF386974 Arabidopsis thaliana 30S ribosomal protein S17, chloroplast precursor (CS17) (F19K16.19) mRNA, complete cds Length = 624 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 288 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 340
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence Length = 111301 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 62513 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 62565
>emb|BX818528.1|CNS0ACLL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 618 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 284 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 336
>emb|BX818035.1|CNS0ACHD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZA12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 598 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 258 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 310
>gb|J05215.1|ATHCPRPS17 A.thaliana chloroplast ribosomal protein S17 (rps17) mRNA, 3' end Length = 619 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 |||||||||||||| || ||||||||||| || ||||||||||| |||||||| Sbjct: 286 aagaagaagtaccaagctcacgaccccgataatcagttcaaggttggcgacgt 338
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.19 Identities = 47/55 (85%) Strand = Plus / Plus Query: 271 gaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgtc 325 |||||| |||| ||| || ||||| || ||||| ||||||||||||||| ||||| Sbjct: 313037 gaagaaataccgggcccatgacccggagaaccaattcaaggtcggcgacatcgtc 313091
>ref|XM_503717.1| Yarrowia lipolytica CLIB122, YALI0E09020g predicted mRNA Length = 2640 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 28 caagaccaagaccaagacgaaga 50 ||||||||||||||||||||||| Sbjct: 327 caagaccaagaccaagacgaaga 349
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 28 caagaccaagaccaagacgaaga 50 ||||||||||||||||||||||| Sbjct: 1078678 caagaccaagaccaagacgaaga 1078656
>gb|BT026974.1| Gasterosteus aculeatus clone CFW132-D08 mRNA sequence Length = 2112 Score = 44.1 bits (22), Expect = 0.74 Identities = 25/26 (96%) Strand = Plus / Minus Query: 208 ggtgggggtggaggtggtgcggctca 233 |||||||||||||||| ||||||||| Sbjct: 1641 ggtgggggtggaggtgctgcggctca 1616
>ref|XM_634027.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0185474) mRNA, complete cds Length = 6252 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 550 tattactgctcttgttgttctc 571 |||||||||||||||||||||| Sbjct: 850 tattactgctcttgttgttctc 829
>gb|AC120173.9| Mus musculus chromosome 1, clone RP24-485J8, complete sequence Length = 189779 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 631 ttgtatcttttttcttcttcct 652 |||||||||||||||||||||| Sbjct: 77541 ttgtatcttttttcttcttcct 77562
>gb|AC100730.8| Mus musculus chromosome 15, clone RP24-288B1, complete sequence Length = 190788 Score = 44.1 bits (22), Expect = 0.74 Identities = 25/26 (96%) Strand = Plus / Minus Query: 624 ctgaaatttgtatcttttttcttctt 649 ||||||||||| |||||||||||||| Sbjct: 71187 ctgaaatttgtttcttttttcttctt 71162
>ref|XM_850140.1| PREDICTED: Canis familiaris cardiac hyperpolarization-activated current subunit 2 (HCN2), mRNA Length = 2514 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 gagaagatcaagaagaagtacc 281 |||||||||||||||||||||| Sbjct: 649 gagaagatcaagaagaagtacc 670
>gb|AC079598.13| Homo sapiens 12 BAC RP11-248E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168901 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 619 tggcactgaaatttgtatcttt 640 |||||||||||||||||||||| Sbjct: 73607 tggcactgaaatttgtatcttt 73586
>emb|CR627499.11| Zebrafish DNA sequence from clone CH211-1C22 in linkage group 20, complete sequence Length = 42644 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 705 atttattatctgtttttgtaat 726 |||||||||||||||||||||| Sbjct: 29336 atttattatctgtttttgtaat 29315
>emb|AL589879.21| Mouse DNA sequence from clone RP23-38E20 on chromosome 13 Contains the genes for H2b histone family member A, two H2a, two H4 and an H2b histone family member, a serine/threonine protein kinase pseudogene, a novel pseudogene, a novel gene (4930500C15Rik), the gene for a novel KRAB box and C2H2 Zinc Finger containing protein, a ribosomal protein L21 (RPL21) pseudogene, a TU mitochondrial translation elongation factor (tufa) pseudogene, the 5' end of the gene for a novel protein similar to nuclear envelope pore membrane protein POM121 and four CpG islands, complete sequence Length = 182817 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 624 ctgaaatttgtatcttttttct 645 |||||||||||||||||||||| Sbjct: 107208 ctgaaatttgtatcttttttct 107187
>emb|AL954679.7| Zebrafish DNA sequence from clone DKEY-63J12 in linkage group 20, complete sequence Length = 132218 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 705 atttattatctgtttttgtaat 726 |||||||||||||||||||||| Sbjct: 13225 atttattatctgtttttgtaat 13246
>gb|AY221752.1| Cavia porcellus hyperpolarization-activated cation channel (HCN2) mRNA, partial cds Length = 956 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 gagaagatcaagaagaagtacc 281 |||||||||||||||||||||| Sbjct: 11 gagaagatcaagaagaagtacc 32
>gb|AC171728.2| Solanum lycopersicum chromosome 1 clone C01HBa0216G16, complete sequence Length = 188412 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 629 atttgtatcttttttcttctt 649 ||||||||||||||||||||| Sbjct: 182920 atttgtatcttttttcttctt 182900
>gb|DQ244845.1| Zea mays clone 11133 mRNA sequence Length = 653 Score = 42.1 bits (21), Expect = 2.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 269 aagaagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgt 321 ||||||||||| |||||||| ||||| || ||| ||||||||| || ||||| Sbjct: 253 aagaagaagtatcaggcgcatgaccctgataacgtgttcaaggtgggtgacgt 305
>ref|XM_001220321.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01101) mRNA, complete cds Length = 7008 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 4601 agcaagaccaagaccaagaccaaga 4625
>ref|XM_515627.2| PREDICTED: Pan troglodytes similar to alpha-2B adrenoceptor (LOC459410), mRNA Length = 2543 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 cgccgtccccgtcccgccccg 390 ||||||||||||||||||||| Sbjct: 1206 cgccgtccccgtcccgccccg 1186
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 16872823 agcaagaccaagaccaagaccaaga 16872799
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 293 cccgacaaccagttcaaggtcggcgacgt 321 ||||||||||||||||||| || |||||| Sbjct: 1611232 cccgacaaccagttcaaggacgacgacgt 1611260
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gtcgtcgagctcgtccgctcc 340 ||||||||||||||||||||| Sbjct: 88514 gtcgtcgagctcgtccgctcc 88494
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gtcgtcgagctcgtccgctcc 340 ||||||||||||||||||||| Sbjct: 29169 gtcgtcgagctcgtccgctcc 29189
>gb|AE010357.1| Methanopyrus kandleri AV19 section 56 of 157 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cgtcgagctcgtccgctcccg 342 ||||||||||||||||||||| Sbjct: 3448 cgtcgagctcgtccgctcccg 3468
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 gcgacacccgccgcaaggccc 410 ||||||||||||||||||||| Sbjct: 73916 gcgacacccgccgcaaggccc 73936
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 ttttgctttccctcattctct 514 ||||||||||||||||||||| Sbjct: 978163 ttttgctttccctcattctct 978143
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 ggaggtggtgcggctcaagca 237 ||||||||||||||||||||| Sbjct: 79627 ggaggtggtgcggctcaagca 79647
>gb|AC010922.10| Drosophila melanogaster clone BACR09H01, complete sequence Length = 152607 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 88235 agcaagaccaagaccaagaccaaga 88259
>ref|XM_676892.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8715.2), mRNA Length = 3561 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 ggtgggggtggaggtggtgcg 228 ||||||||||||||||||||| Sbjct: 1619 ggtgggggtggaggtggtgcg 1599
>gb|AC126688.4| Mus musculus BAC clone RP23-152P20 from chromosome 7, complete sequence Length = 205673 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 626 gaaatttgtatcttttttctt 646 ||||||||||||||||||||| Sbjct: 158712 gaaatttgtatcttttttctt 158692
>gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome 6, complete sequence Length = 209736 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 57870 agcaagaccaagaccaagacaaaga 57894
>gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, complete sequence Length = 226284 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 626 gaaatttgtatcttttttctt 646 ||||||||||||||||||||| Sbjct: 166186 gaaatttgtatcttttttctt 166206
>gb|AC160989.2| Mus musculus BAC clone RP23-194N9 from chromosome 9, complete sequence Length = 215923 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 158993 agcaagaccaagaccaagaccaaga 158969
>ref|XM_567394.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNJ03150) partial mRNA Length = 1335 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 ttttgctttccctcattctct 514 ||||||||||||||||||||| Sbjct: 110 ttttgctttccctcattctct 130
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 42.1 bits (21), Expect = 2.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 272 aagaagtaccaggcgcacgaccccgacaaccagttcaaggtcggcgacgtcgt 324 ||||||||| |||| |||||| |||| |||||||||||||||||| |||| Sbjct: 31358 aagaagtacaaggctcacgacgagaacaatcagttcaaggtcggcgacctcgt 31410
>emb|AL360093.11| Human DNA sequence from clone RP11-135J2 on chromosome 1 Contains the LYPLAL1 gene for lysophospholipase-like protein 1, a novel pseudogene (KIAA1238) and a novel transcript, complete sequence Length = 141156 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 625 tgaaatttgtatcttttttct 645 ||||||||||||||||||||| Sbjct: 85410 tgaaatttgtatcttttttct 85430
>emb|AL049867.2|HSJ738I16 Human DNA sequence from clone RP4-738I16 on chromosome 20p11.22-12.2 Contains STSs and GSSs, complete sequence Length = 96444 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 ccccatctccaagaccaagca 363 ||||||||||||||||||||| Sbjct: 36285 ccccatctccaagaccaagca 36305
>emb|CR855860.7| Zebrafish DNA sequence from clone CH211-239D6 in linkage group 19, complete sequence Length = 90948 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 703 gtatttattatctgtttttgt 723 ||||||||||||||||||||| Sbjct: 55637 gtatttattatctgtttttgt 55657
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 547046 agcaagaccaagaccaagaccaaga 547022
>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence Length = 485192 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 389816 agcaagaccaagaccaagaccaaga 389792
>emb|AL646044.13| Mouse DNA sequence from clone RP23-269O5 on chromosome 11, complete sequence Length = 197473 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 36686 agcaagaccaagaccaagaccaaga 36710
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 tcggcgacgtcgtcgagctcg 332 ||||||||||||||||||||| Sbjct: 1276909 tcggcgacgtcgtcgagctcg 1276929
>gb|AC007630.4|AC007630 Homo sapiens chromosome 20 clone P1-7739, complete sequence Length = 169494 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 ccccatctccaagaccaagca 363 ||||||||||||||||||||| Sbjct: 54549 ccccatctccaagaccaagca 54569
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 310 ggtcggcgacgtcgtcgagctcgtccgct 338 |||||||||||||||||||| | |||||| Sbjct: 2881235 ggtcggcgacgtcgtcgagcgcttccgct 2881263 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 300 accagttcaaggtcggcgacgtcgtcgag 328 ||||| |||||||||||||||| |||||| Sbjct: 6271902 accagctcaaggtcggcgacgtggtcgag 6271930
>emb|BX322604.9| Zebrafish DNA sequence from clone DKEY-10N19 in linkage group 5, complete sequence Length = 175983 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 gtatttattatctgtttttgt 723 ||||||||||||||||||||| Sbjct: 102412 gtatttattatctgtttttgt 102392
>emb|BX005445.10| Zebrafish DNA sequence from clone DKEYP-72A4 in linkage group 5, complete sequence Length = 123526 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 703 gtatttattatctgtttttgt 723 ||||||||||||||||||||| Sbjct: 56344 gtatttattatctgtttttgt 56364
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 gaggatcgaggcggcgaagca 168 ||||||||||||||||||||| Sbjct: 1722215 gaggatcgaggcggcgaagca 1722195
>emb|BX005402.7| Zebrafish DNA sequence from clone DKEY-237J11, complete sequence Length = 148726 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 703 gtatttattatctgtttttgt 723 ||||||||||||||||||||| Sbjct: 90942 gtatttattatctgtttttgt 90962
>gb|AC161599.3| Mus musculus BAC clone RP23-346B16 from chromosome 9, complete sequence Length = 198471 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 agcaagaccaagaccaagacgaaga 50 |||||||||||||||||||| |||| Sbjct: 69930 agcaagaccaagaccaagaccaaga 69906 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 143,559,909 Number of extensions: 8888964 Number of successful extensions: 235078 Number of sequences better than 10.0: 68 Number of HSP's gapped: 235074 Number of HSP's successfully gapped: 81 Length of query: 776 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 754 Effective length of database: 18,508,616,841 Effective search space: 13955497098114 Effective search space used: 13955497098114 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)