ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf91k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O70279:DGC14_MOUSE Protein DGCR14 - Mus musculus (Mouse) 33 0.44
2Q96DF8:DGC14_HUMAN Protein DGCR14 - Homo sapiens (Human) 31 1.3
3Q07564:ECPC_EIKCO Fimbrial protein ecpC precursor - Eikenella co... 30 2.2
4Q9TSZ3:KCNH2_CANFA Potassium voltage-gated channel subfamily H m... 30 2.9
5P21525:FOSL_DROME Transcription factor kayak - Drosophila melano... 30 2.9
6P06592:PHYA_CUCPE Phytochrome A - Cucurbita pepo (Vegetable marr... 30 3.7

>O70279:DGC14_MOUSE Protein DGCR14 - Mus musculus (Mouse)|
          Length = 479
 Score = 32.7 bits (73), Expect = 0.44
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 247 RSAGTPQPLPQQHG*MVTDRRFGGVQRSMNTNAMTAATRSPRKLKPASSSDSLLQ 83
           R++ TP P    H         GG Q   +T A  +ATR+P    PAS +D+LLQ
Sbjct: 418 RASYTPSPARSSH----LKTPAGGPQTPTSTPAPGSATRTPLTQDPASITDNLLQ 468



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>Q96DF8:DGC14_HUMAN Protein DGCR14 - Homo sapiens (Human)|
          Length = 476

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 247 RSAGTPQPLPQQHG*MVTDRRFGGVQRSMNTNAMTAATRSPRKLKPASSSDSLLQ 83
           R++ TP P    H          G+Q   +T A  +ATR+P    PAS +D+LLQ
Sbjct: 415 RASYTPSPARSTH----LKTPASGLQTPTSTPAPGSATRTPLTQDPASITDNLLQ 465



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>Q07564:ECPC_EIKCO Fimbrial protein ecpC precursor - Eikenella corrodens|
          Length = 153

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 307 GAIAWPAPSHEQRSFLPANQRSAGTPQPLP 218
           G+ +W   S+    +LP++ R+A TP P P
Sbjct: 124 GSFSWECSSNADAKYLPSSCRNAATPTPTP 153



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>Q9TSZ3:KCNH2_CANFA Potassium voltage-gated channel subfamily H member 2 - Canis|
           familiaris (Dog)
          Length = 1158

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 301 IAWPAPSHEQRSFLPANQRSAGTPQPLPQQHG*MVTDRRFGGVQRSMNTNAMTAATRSPR 122
           +A   P  EQR+ + ++   AG P+PLP      +     G    S  + A T +  S  
Sbjct: 222 VAGLGPMEEQRALVGSSSPPAGAPEPLPSPRAHSLNPDASG----SSCSLARTRSRESCA 277

Query: 121 KLKPASSSDSL 89
            ++ ASS+D +
Sbjct: 278 SVRRASSADDI 288



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>P21525:FOSL_DROME Transcription factor kayak - Drosophila melanogaster (Fruit fly)|
          Length = 722

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 259 PANQRSAGTP-QPLPQQHG*MVTDRRFGGVQRSMNTNAMTAATRSPRKLKPASSSDSLLQ 83
           PA   SAG+        H     D   G +     T   T  + SP  LKPA++ DSLL 
Sbjct: 471 PAGLLSAGSSGSGASSHHNHNSNDSSNGTITGMDATLNSTGRSNSPLDLKPAANIDSLLM 530

Query: 82  HI 77
           HI
Sbjct: 531 HI 532



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>P06592:PHYA_CUCPE Phytochrome A - Cucurbita pepo (Vegetable marrow) (Summer squash)|
          Length = 1124

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 191 SPLRWGAEEHEH-QRDDGRDEEPQ 123
           S +RWG  +HEH Q+DD R   P+
Sbjct: 526 SEIRWGGAKHEHGQKDDARKMHPR 549


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 67,090,833
Number of extensions: 1365163
Number of successful extensions: 3076
Number of sequences better than 10.0: 6
Number of HSP's gapped: 3074
Number of HSP's successfully gapped: 6
Length of query: 141
Length of database: 100,686,439
Length adjustment: 102
Effective length of query: 39
Effective length of database: 72,708,349
Effective search space: 2835625611
Effective search space used: 2835625611
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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