ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf91k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111261.1| Zea mays CL52175_1 mRNA sequence 68 3e-08
2emb|CT836472.1| Oryza sativa (indica cultivar-group) cDNA clone:... 66 1e-07
3dbj|AK241563.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 66 1e-07
4gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6ref|XM_368551.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 1.6
7ref|NM_202098.2| Arabidopsis thaliana unknown protein (AT1G14570... 42 1.6
8ref|NM_101324.2| Arabidopsis thaliana unknown protein (AT1G14570... 42 1.6
9ref|XM_548740.2| PREDICTED: Canis familiaris similar to Insulin-... 42 1.6
10gb|AC078992.23| Homo sapiens 12q BAC RP11-144F15 (Roswell Park C... 42 1.6
11gb|AY064683.1| Arabidopsis thaliana unknown protein (At1g14570; ... 42 1.6
12ref|XM_686029.1| PREDICTED: Danio rerio similar to Adapter-relat... 42 1.6
13gb|AF370507.1|AF370507 Arabidopsis thaliana Unknown protein (T5E... 42 1.6
14gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana... 42 1.6
15emb|BX815727.1|CNS0AEBN Arabidopsis thaliana Full-length cDNA Co... 42 1.6
16emb|BX815721.1|CNS0ABJ6 Arabidopsis thaliana Full-length cDNA Co... 42 1.6
17gb|AC021316.17| Homo sapiens chromosome 15, clone RP11-11J16, co... 40 6.2
18ref|XM_513653.2| PREDICTED: Pan troglodytes ubiquitin-like 4B (U... 40 6.2
19gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome... 40 6.2
20gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, com... 40 6.2
21gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosom... 40 6.2
22gb|AC158991.2| Mus musculus BAC clone RP24-488G14 from chromosom... 40 6.2
23gb|AC022153.5| Homo sapiens chromosome 19 clone LLNLF-65H9, comp... 40 6.2
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
25emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on ch... 40 6.2
26emb|AL160006.16| Human DNA sequence from clone RP4-773N10 on chr... 40 6.2
27emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 i... 40 6.2
28gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, c... 40 6.2
29gb|AC174480.1| Mus musculus BAC clone RP23-154N2 from chromosome... 40 6.2
30dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
31gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, co... 40 6.2
32emb|AL928584.23| Mouse DNA sequence from clone RP23-251I16 on ch... 40 6.2
33dbj|AP003420.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.2
34gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complet... 40 6.2
35gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.2
36gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complet... 40 6.2
37dbj|AP000810.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.2

>gb|AY111261.1| Zea mays CL52175_1 mRNA sequence
          Length = 811
 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 121 tcctggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccac 180
           |||||||||| || ||||| ||| |||||||| |||||||||||||||||||| | || |
Sbjct: 550 tcctggggctgctggtcgccgccatcatcgcgctggtgttcatgctcctctgcgcgccgc 491

                                                 
Query: 181 cgaagcggcgatccgtcaccatctacccatgctgctga 218
           | | | |||| | |||| || ||||||| |||||||||
Sbjct: 490 ccaggaggcgctgcgtcgccgtctacccgtgctgctga 453



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>emb|CT836472.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN061P16, full
           insert sequence
          Length = 552

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                       
Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183
           ||||||| |||||||| ||  ||||||| |||||| | |||||| ||||||| || ||  
Sbjct: 172 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 231

                                                
Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220
            |||||| || |||||||||||||| |||||||||||
Sbjct: 232 ggcggcgctcagtcaccatctacccttgctgctgagg 268



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>dbj|AK241563.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065179A03,
           full insert sequence
          Length = 540

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                       
Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183
           ||||||| |||||||| ||  ||||||| |||||| | |||||| ||||||| || ||  
Sbjct: 365 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 306

                                                
Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220
            |||||| || |||||||||||||| |||||||||||
Sbjct: 305 ggcggcgctcagtcaccatctacccttgctgctgagg 269



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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0025P09, complete sequence
          Length = 167318

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                         
Query: 124   tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183
             ||||||| |||||||| ||  ||||||| |||||| | |||||| ||||||| || ||  
Sbjct: 71606 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 71547

                                                  
Query: 184   agcggcgatccgtcaccatctacccatgctgctgagg 220
              |||||| || |||||||||||||| |||||||||||
Sbjct: 71546 ggcggcgctcagtcaccatctacccttgctgctgagg 71510



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                            
Query: 124      tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183
                ||||||| |||||||| ||  ||||||| |||||| | |||||| ||||||| || ||  
Sbjct: 17811652 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 17811593

                                                     
Query: 184      agcggcgatccgtcaccatctacccatgctgctgagg 220
                 |||||| || |||||||||||||| |||||||||||
Sbjct: 17811592 ggcggcgctcagtcaccatctacccttgctgctgagg 17811556



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>ref|XM_368551.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00693.4) partial mRNA
          Length = 2334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 91  gcgagtcggaggaggaggcgg 111
           |||||||||||||||||||||
Sbjct: 542 gcgagtcggaggaggaggcgg 562



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>ref|NM_202098.2| Arabidopsis thaliana unknown protein (AT1G14570) mRNA, complete cds
          Length = 1778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 671 tgctgaggcagaggctgagga 651



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>ref|NM_101324.2| Arabidopsis thaliana unknown protein (AT1G14570) mRNA, complete cds
          Length = 1679

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 582 tgctgaggcagaggctgagga 562



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>ref|XM_548740.2| PREDICTED: Canis familiaris similar to Insulin-like growth factor
            binding protein 3 precursor (IGFBP-3) (IBP-3)
            (IGF-binding protein 3) (LOC491618), mRNA
          Length = 1692

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 86   cagcagcgagtcggaggagga 106
            |||||||||||||||||||||
Sbjct: 1230 cagcagcgagtcggaggagga 1250



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>gb|AC078992.23| Homo sapiens 12q BAC RP11-144F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 84657

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 199  ccatctacccatgctgctgag 219
            |||||||||||||||||||||
Sbjct: 2785 ccatctacccatgctgctgag 2805



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>gb|AY064683.1| Arabidopsis thaliana unknown protein (At1g14570; T5E21.7) mRNA,
           complete cds
          Length = 1456

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 468 tgctgaggcagaggctgagga 448



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>ref|XM_686029.1| PREDICTED: Danio rerio similar to Adapter-related protein complex 3
           beta 2 subunit (Beta3B-adaptin) (Adaptor protein complex
           AP-3 beta-2 subunit) (AP-3 complex beta-2 subunit)
           (Clathrin assembly protein complex 3 beta-2 large chain)
           (Neuron-specific vesicle coat protein ... (LOC562655),
           mRNA
          Length = 738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  agcagcgagtcggaggaggag 107
           |||||||||||||||||||||
Sbjct: 259 agcagcgagtcggaggaggag 279



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>gb|AF370507.1|AF370507 Arabidopsis thaliana Unknown protein (T5E21.7) mRNA, complete cds
          Length = 1667

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 576 tgctgaggcagaggctgagga 556



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>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I,
             complete sequence
          Length = 83351

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tgctgaggcagaggctgagga 233
             |||||||||||||||||||||
Sbjct: 23029 tgctgaggcagaggctgagga 23009



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>emb|BX815727.1|CNS0AEBN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS89ZB11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1578

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 504 tgctgaggcagaggctgagga 484



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>emb|BX815721.1|CNS0ABJ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZA08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1626

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 213 tgctgaggcagaggctgagga 233
           |||||||||||||||||||||
Sbjct: 564 tgctgaggcagaggctgagga 544



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>gb|AC021316.17| Homo sapiens chromosome 15, clone RP11-11J16, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ggcagaggctgaggagtccc 238
             ||||||||||||||||||||
Sbjct: 94703 ggcagaggctgaggagtccc 94684



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>ref|XM_513653.2| PREDICTED: Pan troglodytes ubiquitin-like 4B (UBL4B), mRNA
          Length = 1955

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  gcagaggctgaggagtcccc 239
            ||||||||||||||||||||
Sbjct: 1632 gcagaggctgaggagtcccc 1651



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>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence
          Length = 197272

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    gggcttcagcttcctggggc 129
              ||||||||||||||||||||
Sbjct: 182959 gggcttcagcttcctggggc 182978



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>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence
          Length = 196709

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gggcttcagcttcctggggc 129
             ||||||||||||||||||||
Sbjct: 14808 gggcttcagcttcctggggc 14827



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>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence
          Length = 179746

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     tccagcatagctagctaagc 58
              ||||||||||||||||||||
Sbjct: 117666 tccagcatagctagctaagc 117685



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>gb|AC158991.2| Mus musculus BAC clone RP24-488G14 from chromosome 7, complete sequence
          Length = 210271

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tccagcatagctagctaagc 58
             ||||||||||||||||||||
Sbjct: 23673 tccagcatagctagctaagc 23692



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>gb|AC022153.5| Homo sapiens chromosome 19 clone LLNLF-65H9, complete sequence
          Length = 37810

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    agcatggggaagatgtgctg 85
             ||||||||||||||||||||
Sbjct: 16930 agcatggggaagatgtgctg 16949



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 75       aagatgtgctgcagcagcga 94
                ||||||||||||||||||||
Sbjct: 12404002 aagatgtgctgcagcagcga 12403983



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>emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on chromosome 10 Contains a
             novel gene (FLJ34785 FLJ33470), a novel gene and a CpG
             island, complete sequence
          Length = 123083

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    agcatggggaagatgtgctg 85
             ||||||||||||||||||||
Sbjct: 20584 agcatggggaagatgtgctg 20565



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>emb|AL160006.16| Human DNA sequence from clone RP4-773N10 on chromosome 1p13.1-13.3
             Contains the 3' end of gene KIAA1761 (FLJ14743) and the
             ALX3 gene for aristaless-like homeobox 3, complete
             sequence
          Length = 91783

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   gcagaggctgaggagtcccc 239
             ||||||||||||||||||||
Sbjct: 60415 gcagaggctgaggagtcccc 60434



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>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13,
              complete sequence
          Length = 136909

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     gagtcggaggaggaggcggg 112
              ||||||||||||||||||||
Sbjct: 114065 gagtcggaggaggaggcggg 114046



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>gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, complete sequence
          Length = 173986

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  ggcagaggctgaggagtccc 238
            ||||||||||||||||||||
Sbjct: 6129 ggcagaggctgaggagtccc 6110



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>gb|AC174480.1| Mus musculus BAC clone RP23-154N2 from chromosome 1, complete sequence
          Length = 207205

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 209   atgctgctgaggcagaggctgagg 232
             ||||||||||||| ||||||||||
Sbjct: 23129 atgctgctgaggctgaggctgagg 23106



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>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0011P19
          Length = 150811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aagatgtgctgcagcagcga 94
             ||||||||||||||||||||
Sbjct: 89647 aagatgtgctgcagcagcga 89628



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>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence
          Length = 157784

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gcttcagcttcctggggctc 131
             ||||||||||||||||||||
Sbjct: 25919 gcttcagcttcctggggctc 25938



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>emb|AL928584.23| Mouse DNA sequence from clone RP23-251I16 on chromosome 4, complete
             sequence
          Length = 118310

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   tgctgaggcagaggctgagg 232
             ||||||||||||||||||||
Sbjct: 59586 tgctgaggcagaggctgagg 59567



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>dbj|AP003420.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-614K12, complete
             sequence
          Length = 160945

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gctgaggcagaggctgagga 233
             ||||||||||||||||||||
Sbjct: 64191 gctgaggcagaggctgagga 64210



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>gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complete sequence
          Length = 192663

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    atgctgctgaggcagaggctgagg 232
              ||||||||||||| ||||||||||
Sbjct: 142897 atgctgctgaggctgaggctgagg 142874



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     ggagcaggccaggcaatggc 304
               ||||||||||||||||||||
Sbjct: 2896485 ggagcaggccaggcaatggc 2896466



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>gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complete sequence
          Length = 246976

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gaggcagaggctgaggagtc 236
             ||||||||||||||||||||
Sbjct: 98818 gaggcagaggctgaggagtc 98837



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>dbj|AP000810.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-765H23
          Length = 179934

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    gctgaggcagaggctgagga 233
              ||||||||||||||||||||
Sbjct: 167081 gctgaggcagaggctgagga 167100


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 78,673,786
Number of extensions: 5198921
Number of successful extensions: 361910
Number of sequences better than 10.0: 37
Number of HSP's gapped: 361910
Number of HSP's successfully gapped: 37
Length of query: 425
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 403
Effective length of database: 18,508,616,841
Effective search space: 7458972586923
Effective search space used: 7458972586923
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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