Clone Name | FLbaf91k03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY111261.1| Zea mays CL52175_1 mRNA sequence Length = 811 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 121 tcctggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccac 180 |||||||||| || ||||| ||| |||||||| |||||||||||||||||||| | || | Sbjct: 550 tcctggggctgctggtcgccgccatcatcgcgctggtgttcatgctcctctgcgcgccgc 491 Query: 181 cgaagcggcgatccgtcaccatctacccatgctgctga 218 | | | |||| | |||| || ||||||| ||||||||| Sbjct: 490 ccaggaggcgctgcgtcgccgtctacccgtgctgctga 453
>emb|CT836472.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN061P16, full insert sequence Length = 552 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183 ||||||| |||||||| || ||||||| |||||| | |||||| ||||||| || || Sbjct: 172 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 231 Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220 |||||| || |||||||||||||| ||||||||||| Sbjct: 232 ggcggcgctcagtcaccatctacccttgctgctgagg 268
>dbj|AK241563.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065179A03, full insert sequence Length = 540 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183 ||||||| |||||||| || ||||||| |||||| | |||||| ||||||| || || Sbjct: 365 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 306 Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220 |||||| || |||||||||||||| ||||||||||| Sbjct: 305 ggcggcgctcagtcaccatctacccttgctgctgagg 269
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183 ||||||| |||||||| || ||||||| |||||| | |||||| ||||||| || || Sbjct: 71606 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 71547 Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220 |||||| || |||||||||||||| ||||||||||| Sbjct: 71546 ggcggcgctcagtcaccatctacccttgctgctgagg 71510
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 124 tggggctcctcgtcgcggccgtcatcgcgttggtgttcatgctcctctgcaccccaccga 183 ||||||| |||||||| || ||||||| |||||| | |||||| ||||||| || || Sbjct: 17811652 tggggcttctcgtcgctgcgatcatcgccttggtgctgatgctcatctgcacaccgccac 17811593 Query: 184 agcggcgatccgtcaccatctacccatgctgctgagg 220 |||||| || |||||||||||||| ||||||||||| Sbjct: 17811592 ggcggcgctcagtcaccatctacccttgctgctgagg 17811556
>ref|XM_368551.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00693.4) partial mRNA Length = 2334 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gcgagtcggaggaggaggcgg 111 ||||||||||||||||||||| Sbjct: 542 gcgagtcggaggaggaggcgg 562
>ref|NM_202098.2| Arabidopsis thaliana unknown protein (AT1G14570) mRNA, complete cds Length = 1778 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 671 tgctgaggcagaggctgagga 651
>ref|NM_101324.2| Arabidopsis thaliana unknown protein (AT1G14570) mRNA, complete cds Length = 1679 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 582 tgctgaggcagaggctgagga 562
>ref|XM_548740.2| PREDICTED: Canis familiaris similar to Insulin-like growth factor binding protein 3 precursor (IGFBP-3) (IBP-3) (IGF-binding protein 3) (LOC491618), mRNA Length = 1692 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 cagcagcgagtcggaggagga 106 ||||||||||||||||||||| Sbjct: 1230 cagcagcgagtcggaggagga 1250
>gb|AC078992.23| Homo sapiens 12q BAC RP11-144F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 84657 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 ccatctacccatgctgctgag 219 ||||||||||||||||||||| Sbjct: 2785 ccatctacccatgctgctgag 2805
>gb|AY064683.1| Arabidopsis thaliana unknown protein (At1g14570; T5E21.7) mRNA, complete cds Length = 1456 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 468 tgctgaggcagaggctgagga 448
>ref|XM_686029.1| PREDICTED: Danio rerio similar to Adapter-related protein complex 3 beta 2 subunit (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (AP-3 complex beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) (Neuron-specific vesicle coat protein ... (LOC562655), mRNA Length = 738 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 agcagcgagtcggaggaggag 107 ||||||||||||||||||||| Sbjct: 259 agcagcgagtcggaggaggag 279
>gb|AF370507.1|AF370507 Arabidopsis thaliana Unknown protein (T5E21.7) mRNA, complete cds Length = 1667 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 576 tgctgaggcagaggctgagga 556
>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence Length = 83351 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 23029 tgctgaggcagaggctgagga 23009
>emb|BX815727.1|CNS0AEBN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZB11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1578 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 504 tgctgaggcagaggctgagga 484
>emb|BX815721.1|CNS0ABJ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1626 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagga 233 ||||||||||||||||||||| Sbjct: 564 tgctgaggcagaggctgagga 544
>gb|AC021316.17| Homo sapiens chromosome 15, clone RP11-11J16, complete sequence Length = 173660 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcagaggctgaggagtccc 238 |||||||||||||||||||| Sbjct: 94703 ggcagaggctgaggagtccc 94684
>ref|XM_513653.2| PREDICTED: Pan troglodytes ubiquitin-like 4B (UBL4B), mRNA Length = 1955 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gcagaggctgaggagtcccc 239 |||||||||||||||||||| Sbjct: 1632 gcagaggctgaggagtcccc 1651
>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence Length = 197272 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gggcttcagcttcctggggc 129 |||||||||||||||||||| Sbjct: 182959 gggcttcagcttcctggggc 182978
>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence Length = 196709 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gggcttcagcttcctggggc 129 |||||||||||||||||||| Sbjct: 14808 gggcttcagcttcctggggc 14827
>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence Length = 179746 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tccagcatagctagctaagc 58 |||||||||||||||||||| Sbjct: 117666 tccagcatagctagctaagc 117685
>gb|AC158991.2| Mus musculus BAC clone RP24-488G14 from chromosome 7, complete sequence Length = 210271 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tccagcatagctagctaagc 58 |||||||||||||||||||| Sbjct: 23673 tccagcatagctagctaagc 23692
>gb|AC022153.5| Homo sapiens chromosome 19 clone LLNLF-65H9, complete sequence Length = 37810 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agcatggggaagatgtgctg 85 |||||||||||||||||||| Sbjct: 16930 agcatggggaagatgtgctg 16949
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aagatgtgctgcagcagcga 94 |||||||||||||||||||| Sbjct: 12404002 aagatgtgctgcagcagcga 12403983
>emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on chromosome 10 Contains a novel gene (FLJ34785 FLJ33470), a novel gene and a CpG island, complete sequence Length = 123083 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 agcatggggaagatgtgctg 85 |||||||||||||||||||| Sbjct: 20584 agcatggggaagatgtgctg 20565
>emb|AL160006.16| Human DNA sequence from clone RP4-773N10 on chromosome 1p13.1-13.3 Contains the 3' end of gene KIAA1761 (FLJ14743) and the ALX3 gene for aristaless-like homeobox 3, complete sequence Length = 91783 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gcagaggctgaggagtcccc 239 |||||||||||||||||||| Sbjct: 60415 gcagaggctgaggagtcccc 60434
>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13, complete sequence Length = 136909 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gagtcggaggaggaggcggg 112 |||||||||||||||||||| Sbjct: 114065 gagtcggaggaggaggcggg 114046
>gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, complete sequence Length = 173986 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggcagaggctgaggagtccc 238 |||||||||||||||||||| Sbjct: 6129 ggcagaggctgaggagtccc 6110
>gb|AC174480.1| Mus musculus BAC clone RP23-154N2 from chromosome 1, complete sequence Length = 207205 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 atgctgctgaggcagaggctgagg 232 ||||||||||||| |||||||||| Sbjct: 23129 atgctgctgaggctgaggctgagg 23106
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aagatgtgctgcagcagcga 94 |||||||||||||||||||| Sbjct: 89647 aagatgtgctgcagcagcga 89628
>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence Length = 157784 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gcttcagcttcctggggctc 131 |||||||||||||||||||| Sbjct: 25919 gcttcagcttcctggggctc 25938
>emb|AL928584.23| Mouse DNA sequence from clone RP23-251I16 on chromosome 4, complete sequence Length = 118310 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tgctgaggcagaggctgagg 232 |||||||||||||||||||| Sbjct: 59586 tgctgaggcagaggctgagg 59567
>dbj|AP003420.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-614K12, complete sequence Length = 160945 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gctgaggcagaggctgagga 233 |||||||||||||||||||| Sbjct: 64191 gctgaggcagaggctgagga 64210
>gb|AC126797.4| Mus musculus BAC clone RP23-443F6 from 1, complete sequence Length = 192663 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 atgctgctgaggcagaggctgagg 232 ||||||||||||| |||||||||| Sbjct: 142897 atgctgctgaggctgaggctgagg 142874
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggagcaggccaggcaatggc 304 |||||||||||||||||||| Sbjct: 2896485 ggagcaggccaggcaatggc 2896466
>gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complete sequence Length = 246976 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gaggcagaggctgaggagtc 236 |||||||||||||||||||| Sbjct: 98818 gaggcagaggctgaggagtc 98837
>dbj|AP000810.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-765H23 Length = 179934 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gctgaggcagaggctgagga 233 |||||||||||||||||||| Sbjct: 167081 gctgaggcagaggctgagga 167100 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 78,673,786 Number of extensions: 5198921 Number of successful extensions: 361910 Number of sequences better than 10.0: 37 Number of HSP's gapped: 361910 Number of HSP's successfully gapped: 37 Length of query: 425 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 403 Effective length of database: 18,508,616,841 Effective search space: 7458972586923 Effective search space used: 7458972586923 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)