ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf91k01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001053778.1| Oryza sativa (japonica cultivar-group) Os02g0581200 (Os02g0581200) mRNA, complete cds Length = 679 Score = 137 bits (69), Expect = 6e-29 Identities = 101/111 (90%), Gaps = 3/111 (2%) Strand = Plus / Plus Query: 252 cgaggtgcgggagcaaggtgcggtccagcgacgaggactccggc---tggtgggtcggcg 308 |||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||||||| Sbjct: 259 cgaggtacgggagcaaggtgaggtcgagcgacgaggactacggcgcgtggtgggtcggcg 318 Query: 309 agcgcgacgtcgaccgcaaggccgccgactacatcaacgacttccaccaga 359 ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 319 agcgcgacgtcgaccgcaaggcctccgactacatcaacagcttccaccaga 369
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 137 bits (69), Expect = 6e-29 Identities = 101/111 (90%), Gaps = 3/111 (2%) Strand = Plus / Plus Query: 252 cgaggtgcgggagcaaggtgcggtccagcgacgaggactccggc---tggtgggtcggcg 308 |||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||||||| Sbjct: 22420985 cgaggtacgggagcaaggtgaggtcgagcgacgaggactacggcgcgtggtgggtcggcg 22421044 Query: 309 agcgcgacgtcgaccgcaaggccgccgactacatcaacgacttccaccaga 359 ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 22421045 agcgcgacgtcgaccgcaaggcctccgactacatcaacagcttccaccaga 22421095
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 137 bits (69), Expect = 6e-29 Identities = 101/111 (90%), Gaps = 3/111 (2%) Strand = Plus / Plus Query: 252 cgaggtgcgggagcaaggtgcggtccagcgacgaggactccggc---tggtgggtcggcg 308 |||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||||||| Sbjct: 77204 cgaggtacgggagcaaggtgaggtcgagcgacgaggactacggcgcgtggtgggtcggcg 77263 Query: 309 agcgcgacgtcgaccgcaaggccgccgactacatcaacgacttccaccaga 359 ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 77264 agcgcgacgtcgaccgcaaggcctccgactacatcaacagcttccaccaga 77314
>dbj|AK062477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F10, full insert sequence Length = 679 Score = 137 bits (69), Expect = 6e-29 Identities = 101/111 (90%), Gaps = 3/111 (2%) Strand = Plus / Plus Query: 252 cgaggtgcgggagcaaggtgcggtccagcgacgaggactccggc---tggtgggtcggcg 308 |||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||||||| Sbjct: 259 cgaggtacgggagcaaggtgaggtcgagcgacgaggactacggcgcgtggtgggtcggcg 318 Query: 309 agcgcgacgtcgaccgcaaggccgccgactacatcaacgacttccaccaga 359 ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 319 agcgcgacgtcgaccgcaaggcctccgactacatcaacagcttccaccaga 369
>gb|DQ417753.1| Zea mays B73 serine/threonine kinase protein, expressed protein, and RNA-dependent RNA polymerase (mop1) genes, complete cds Length = 144706 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 264 gcaaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgacc 323 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 7483 gcaaggtgcgctccagcgacgaggacaacggctggtgggtcggcgagcgcgacgttgacc 7424 Query: 324 gcaaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 7423 agaaggcctccgacttcatc 7404
>emb|CT833709.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027P22, full insert sequence Length = 542 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 280 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 339 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 340 aaggcctccgacttcatc 357
>emb|CT833708.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016K14, full insert sequence Length = 532 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 279 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 338 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 339 aaggcctccgacttcatc 356
>emb|CT833707.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI008C15, full insert sequence Length = 544 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 282 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 341 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 342 aaggcctccgacttcatc 359
>emb|CT833706.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI005N19, full insert sequence Length = 653 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 284 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 343 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 344 aaggcctccgacttcatc 361
>emb|CT833705.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA009B01, full insert sequence Length = 888 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 276 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 335 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 336 aaggcctccgacttcatc 353
>ref|NM_001059565.1| Oryza sativa (japonica cultivar-group) Os04g0466000 (Os04g0466000) mRNA, complete cds Length = 708 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 281 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 340 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 341 aaggcctccgacttcatc 358
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 23276486 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 23276545 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 23276546 aaggcctccgacttcatc 23276563
>dbj|AK107738.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G05, full insert sequence Length = 718 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 281 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 340 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 341 aaggcctccgacttcatc 358
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 266 aaggtgcggtccagcgacgaggactccggctggtgggtcggcgagcgcgacgtcgaccgc 325 ||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 114639 aaggtccggtcgagcgacgaggacaacgggtggtggatcggcgagcgcgacgtcgaccag 114698 Query: 326 aaggccgccgactacatc 343 |||||| |||||| |||| Sbjct: 114699 aaggcctccgacttcatc 114716
>ref|XM_756822.1| Ustilago maydis 521 hypothetical protein (UM05768.1) partial mRNA Length = 3120 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Plus Query: 190 gtcgaggtcgagctcgagctcgaggt 215 |||||||||||||||||||||||||| Sbjct: 1063 gtcgaggtcgagctcgagctcgaggt 1088
>ref|XM_360146.1| Magnaporthe grisea 70-15 hypothetical protein (MG05520.4) partial mRNA Length = 1464 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 192 cgaggtcgagctcgagctcgaggt 215 |||||||||||||||||||||||| Sbjct: 252 cgaggtcgagctcgagctcgaggt 229
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 307 cgagcgcgacgtcgaccgcaaggccgcc 334 |||||||||||||||||||| ||||||| Sbjct: 110498 cgagcgcgacgtcgaccgcacggccgcc 110525
>gb|AF071565.1|AF071565 Streptomyces lividans signal recognition particle (ffh) gene, complete cds Length = 1904 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 307 cgagcgcgacgtcgaccgcaaggccgcc 334 |||||||||||||||||||| ||||||| Sbjct: 1257 cgagcgcgacgtcgaccgcacggccgcc 1284
>gb|AC158296.6| Mus musculus chromosome 7, clone RP24-78M9, complete sequence Length = 201897 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Minus Query: 473 cttgttatcatgcatgcatgtgtgtgt 499 ||||||||| ||||||||||||||||| Sbjct: 25791 cttgttatcgtgcatgcatgtgtgtgt 25765
>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence Length = 184560 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 127 ggtaggtaggaggatgggaggga 149 ||||||||||||||||||||||| Sbjct: 41373 ggtaggtaggaggatgggaggga 41351
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Minus Query: 307 cgagcgcgacgtcgaccgcaaggccgc 333 |||||||||||||||||||| |||||| Sbjct: 3244887 cgagcgcgacgtcgaccgcacggccgc 3244861
>gb|AC101874.8| Mus musculus chromosome 7, clone RP23-366A20, complete sequence Length = 179708 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 473 cttgttatcatgcatgcatgtgtgtgt 499 ||||||||| ||||||||||||||||| Sbjct: 177015 cttgttatcgtgcatgcatgtgtgtgt 177041
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 taagacagcaacaaaagccagc 29 |||||||||||||||||||||| Sbjct: 2757954 taagacagcaacaaaagccagc 2757933
>gb|AC008340.5| Drosophila melanogaster, chromosome 2R, region 42D-42E, BAC clone BACR07J20, complete sequence Length = 181771 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 taagacagcaacaaaagccagc 29 |||||||||||||||||||||| Sbjct: 164013 taagacagcaacaaaagccagc 163992
>emb|AL645644.8| Mouse DNA sequence from clone RP23-400O5 on chromosome 11 Contains the 3' end of the gene for a novel protein (A530001H01), the 5' end of the Myh10 gene for non-muscle myosin heavy chain 10 and a CpG island, complete sequence Length = 195322 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 478 tatcatgcatgcatgtgtgtgt 499 |||||||||||||||||||||| Sbjct: 44959 tatcatgcatgcatgtgtgtgt 44938
>gb|AC007549.5|AC007549 Drosophila melanogaster, chromosome 2R, region 42D-42E, BAC clone BACR04F03, complete sequence Length = 150587 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 taagacagcaacaaaagccagc 29 |||||||||||||||||||||| Sbjct: 113102 taagacagcaacaaaagccagc 113081
>ref|XM_321459.2| Anopheles gambiae str. PEST ENSANGP00000008560 (ENSANGG00000014893), partial mRNA Length = 18675 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 gtccttctccttcttctgcccgatgt 179 ||||||||||||||||||| |||||| Sbjct: 9495 gtccttctccttcttctgcacgatgt 9470
>ref|XM_321463.2| Anopheles gambiae str. PEST ENSANGP00000017382 (ENSANGG00000014893), partial mRNA Length = 18303 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 154 gtccttctccttcttctgcccgatgt 179 ||||||||||||||||||| |||||| Sbjct: 9012 gtccttctccttcttctgcacgatgt 8987
>gb|EF057300.1| Panicum virgatum microsatellite PVSSR200, microsatellite PVSSR201, microsatellite PVSSR202, and microsatellite PVSSR203 sequences Length = 725 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 gtcggcgagcgcgacgtcgac 322 ||||||||||||||||||||| Sbjct: 462 gtcggcgagcgcgacgtcgac 482
>gb|AC182572.2| Mimulus guttatus clone MGBa-75A14, complete sequence Length = 129768 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 tgtcgaggtcgagctcgagctcgag 213 ||||||| ||||||||||||||||| Sbjct: 124864 tgtcgagctcgagctcgagctcgag 124840
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 gtcgaccgcaaggccgccgac 337 ||||||||||||||||||||| Sbjct: 3779091 gtcgaccgcaaggccgccgac 3779111
>ref|NM_111605.2| Arabidopsis thaliana RNA binding / nucleic acid binding / protein transporter (AT3G07250) mRNA, complete cds Length = 3885 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gaggtcgagctcgagctcgag 213 ||||||||||||||||||||| Sbjct: 34 gaggtcgagctcgagctcgag 54
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete sequence Length = 99128 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gaggtcgagctcgagctcgag 213 ||||||||||||||||||||| Sbjct: 26511 gaggtcgagctcgagctcgag 26531
>gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199446 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 tcatgcatgcatgtgtgtgtt 500 ||||||||||||||||||||| Sbjct: 28317 tcatgcatgcatgtgtgtgtt 28297
>ref|XM_696498.1| PREDICTED: Danio rerio hypothetical protein LOC554621 (LOC554621), mRNA Length = 1896 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 atgcatgcatgtgtgtgttgattta 506 ||||||||||||||||||| ||||| Sbjct: 1132 atgcatgcatgtgtgtgtttattta 1156
>emb|BX957317.12| Zebrafish DNA sequence from clone DKEY-150K17 in linkage group 19, complete sequence Length = 222684 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 475 tgttatcatgcatgcatgtgtgtgt 499 |||||| |||||||||||||||||| Sbjct: 38816 tgttatgatgcatgcatgtgtgtgt 38792
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 tcggcgagcgcgacgtcgacc 323 ||||||||||||||||||||| Sbjct: 2214244 tcggcgagcgcgacgtcgacc 2214224
>gb|AC146134.4| Pan troglodytes BAC clone RP43-4D8 from chromosome 7, complete sequence Length = 177594 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 catgcatgcatgtgtgtgttg 501 ||||||||||||||||||||| Sbjct: 67920 catgcatgcatgtgtgtgttg 67940
>emb|BX890614.10| Zebrafish DNA sequence from clone DKEY-46N5, complete sequence Length = 115990 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 471 cacttgttatcatgcatgcatgtgtgtgt 499 |||||||| ||||||||||||||||||| Sbjct: 13529 cacttgtttgcatgcatgcatgtgtgtgt 13501
>ref|NM_001004648.1| Danio rerio zgc:101062 (zgc:101062), mRNA gb|BC080840.1| Danio rerio zgc:101062, mRNA (cDNA clone MGC:101062 IMAGE:7152484), complete cds Length = 1915 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 atgcatgcatgtgtgtgttgattta 506 ||||||||||||||||||| ||||| Sbjct: 1137 atgcatgcatgtgtgtgtttattta 1161
>gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, complete sequence Length = 163953 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 gtgtgtgtgcgtgcttggggt 588 ||||||||||||||||||||| Sbjct: 145991 gtgtgtgtgcgtgcttggggt 145971
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 gccgccgactacatcaacgac 349 ||||||||||||||||||||| Sbjct: 2767757 gccgccgactacatcaacgac 2767737 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 129,995,114 Number of extensions: 6951643 Number of successful extensions: 201914 Number of sequences better than 10.0: 42 Number of HSP's gapped: 201909 Number of HSP's successfully gapped: 42 Length of query: 691 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 669 Effective length of database: 18,508,616,841 Effective search space: 12382264666629 Effective search space used: 12382264666629 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
