ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf94h15 |
|---|---|
| Clone Library Name | barley_pub |
>Q3K7X5:GCSP1_PSEPF Glycine dehydrogenase [decarboxylating] 1 - Pseudomonas fluorescens| (strain PfO-1) Length = 950 Score = 34.3 bits (77), Expect = 0.33 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRWWCPPAR 325 +S + L FC + EIR + +D +NP K+ PH EL+G W P +R Sbjct: 852 ESESKEELDRFCDAMIRIREEIRAVENGTLDKD---DNPLKNAPHTAAELVGEWTHPYSR 908 Query: 324 RAA 316 A Sbjct: 909 EQA 911
>Q4K7Q8:GCSP1_PSEF5 Glycine dehydrogenase [decarboxylating] 1 - Pseudomonas fluorescens| (strain Pf-5 / ATCC BAA-477) Length = 951 Score = 34.3 bits (77), Expect = 0.33 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRWWCPPAR 325 +S + L FC + EIR + +D +NP K+ PH EL+G W P +R Sbjct: 851 ESESKEELDRFCDAMIRIREEIRAVENGALDKD---DNPLKNAPHTAAELVGEWSHPYSR 907 Query: 324 RAA 316 A Sbjct: 908 EQA 910
>Q2GJX4:GATA_ANAPZ Glutamyl-tRNA(Gln) amidotransferase subunit A - Anaplasma| phagocytophilum (strain HZ) Length = 491 Score = 33.5 bits (75), Expect = 0.56 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -2 Query: 461 FDIQNGKSGIVRIHAINETTEQKILPNMFRILVKNL*DGGGALQPEELHH 312 +DI+ + GIVR +AI E E++ + M+ +K L D G + LHH Sbjct: 258 YDIKGKRIGIVREYAIPENKERECVSEMWAANLKYLQDCGAEIVDISLHH 307
>Q4ZXH2:GCSP_PSEU2 Glycine dehydrogenase [decarboxylating] - Pseudomonas syringae pv.| syringae (strain B728a) Length = 954 Score = 33.1 bits (74), Expect = 0.74 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRWWCPPAR 325 +S + L FC + EIR + +D +NP K+ PH E++G+W P +R Sbjct: 854 ESESREELDRFCDAMIKIREEIRAVENGTLDKD---DNPLKNAPHTAAEIVGQWSHPYSR 910 Query: 324 RAA 316 A Sbjct: 911 EQA 913
>Q48ME3:GCSP_PSE14 Glycine dehydrogenase [decarboxylating] - Pseudomonas syringae pv.| phaseolicola (strain 1448A / Race 6) Length = 954 Score = 33.1 bits (74), Expect = 0.74 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRWWCPPAR 325 +S + L FC + EIR + +D +NP K+ PH E++G+W P +R Sbjct: 854 ESESREELDRFCDAMIKIREEIRAVENGTLDKD---DNPLKNAPHTAAEIVGQWSHPYSR 910 Query: 324 RAA 316 A Sbjct: 911 EQA 913
>Q887L5:GCSP_PSESM Glycine dehydrogenase [decarboxylating] - Pseudomonas syringae pv.| tomato Length = 954 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRWWCPPAR 325 +S + L FC + EIR +D +NP K+ PH E++G+W P +R Sbjct: 854 ESESREELDRFCDAMIKIREEIRAVEDGTLDKD---DNPLKNAPHTAAEIVGQWSHPYSR 910 Query: 324 RAA 316 A Sbjct: 911 EQA 913
>Q9Z277:BAZ1B_MOUSE Bromodomain adjacent to zinc finger domain protein 1B - Mus musculus| (Mouse) Length = 1479 Score = 30.8 bits (68), Expect = 3.7 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 10/82 (12%) Frame = -1 Query: 375 PHLGEELIGRWWCP----PARRAASSLRIHWG-----GNEGDYLPYNEEEKTARNREMRP 223 P L E G W CP P R S R + G+EGD EEE+ E Sbjct: 1216 PALYEVPDGEWQCPACQPPTARRNSRGRNYTEESTSEGSEGDESGEEEEEEEEEEEEEED 1275 Query: 222 -RARSVRLAPRRLLLGSQLVDP 160 +RL PR+ + G Q V P Sbjct: 1276 YEVAGLRLRPRKTIRGKQSVIP 1297
>Q8UFD6:GCSP_AGRT5 Glycine dehydrogenase [decarboxylating] - Agrobacterium tumefaciens| (strain C58 / ATCC 33970) Length = 954 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -1 Query: 441 IRDSAHTCHK-RDYRTENPAKHVPHLGEELIGRWWCPPAR 325 IR+ A + R + NP K+ PH E+L+G W P +R Sbjct: 869 IREEARDIEEGRADKNNNPLKNAPHTVEDLVGEWDRPYSR 908
>Q92Q11:GCSP_RHIME Glycine dehydrogenase [decarboxylating] - Rhizobium meliloti| (Sinorhizobium meliloti) Length = 954 Score = 30.0 bits (66), Expect = 6.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 402 RTENPAKHVPHLGEELIGRWWCPPARRAA 316 + NP K+ PH E+L+G W P +R A Sbjct: 883 KVNNPLKNAPHTVEDLVGDWDRPYSREQA 911
>Q88P65:GCSP1_PSEPK Glycine dehydrogenase [decarboxylating] 1 - Pseudomonas putida| (strain KT2440) Length = 951 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 504 DSPLNKLLSLFCPLF*HTKWEIRDSAHTCHKRDYRTENPAKHVPHLGEELIGRW 343 +S + L FC + EIR +D +NP K+ PH EL+G W Sbjct: 851 ESESKEELDRFCNAMIQIREEIRAVEDGSLDKD---DNPLKNAPHTAAELVGEW 901
>P02678:FIBB_PETMA Fibrinogen beta chain [Contains: Fibrinopeptide B] - Petromyzon| marinus (Sea lamprey) Length = 477 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/41 (34%), Positives = 16/41 (39%) Frame = -1 Query: 411 RDYRTENPAKHVPHLGEELIGRWWCPPARRAASSLRIHWGG 289 RD NP H E G WW A + R +WGG Sbjct: 398 RDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGG 438 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 93,274,200 Number of extensions: 1974734 Number of successful extensions: 4671 Number of sequences better than 10.0: 11 Number of HSP's gapped: 4671 Number of HSP's successfully gapped: 11 Length of query: 194 Length of database: 100,686,439 Length adjustment: 107 Effective length of query: 87 Effective length of database: 71,336,874 Effective search space: 6206308038 Effective search space used: 6206308038 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
