ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf91i04 |
|---|---|
| Clone Library Name | barley_pub |
>O09053:WRN_MOUSE Werner syndrome ATP-dependent helicase homolog - Mus musculus| (Mouse) Length = 1401 Score = 81.6 bits (200), Expect = 5e-15 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Frame = +1 Query: 271 VVGIDVEWRPSYGPSQNP-VALLQLCVGR-RCLIFQLLHADFVPQALSGFLADPNLRFVG 444 VVG D+EW P Y P + VA++QLCV +C +F + PQ L L + +++ G Sbjct: 72 VVGFDMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAG 131 Query: 445 VGVQEDVERLSDDHALEVANAVDLRGLAAEGMQMPELRQAGLQAVARNVMGANLQKPQRV 624 VG++ D +L D +++ + V+L +A E ++ E L + ++V+G L K + + Sbjct: 132 VGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAE--TWSLNGLVKHVLGKQLLKDKSI 189 Query: 625 RMGPWDAYCLSYDQIKYACIDAFVSFEVGRKL 720 R W + L+ DQ YA DA+ + +KL Sbjct: 190 RCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>Q14191:WRN_HUMAN Werner syndrome ATP-dependent helicase - Homo sapiens (Human)| Length = 1432 Score = 80.5 bits (197), Expect = 1e-14 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Frame = +1 Query: 271 VVGIDVEWRPSYGPSQ-NPVALLQLCVGR-RCLIFQLLHADFVPQALSGFLADPNLRFVG 444 VVG D+EW P Y + VAL+QLCV +C +F + PQ L L + ++ G Sbjct: 78 VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAG 137 Query: 445 VGVQEDVERLSDDHALEVANAVDLRGLAAEGMQMPELRQAGLQAVARNVMGANLQKPQRV 624 VG++ D +L D +++ N V+L +A + ++ E L ++ ++++G L K + + Sbjct: 138 VGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKCTE--TWSLNSLVKHLLGKQLLKDKSI 195 Query: 625 RMGPWDAYCLSYDQIKYACIDAFVSFEVGRKL 720 R W + L+ DQ YA DA+ F + R L Sbjct: 196 RCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL 227
>O93530:WRN_XENLA Werner syndrome ATP-dependent helicase homolog - Xenopus laevis| (African clawed frog) Length = 1436 Score = 79.7 bits (195), Expect = 2e-14 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%) Frame = +1 Query: 241 QEIRS-VLGDLVVGIDVEWRPSYGPSQN-PVALLQLCVG-RRCLIFQLLHADFVPQALSG 411 ++IRS +L + V+G D+EW P Y + VAL+Q+CV ++C +F + P+ L Sbjct: 61 EDIRSSLLEEDVLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKR 120 Query: 412 FLADPNLRFVGVGVQEDVERLSDDHALEVANAVDLRGLAAEGMQMPELRQAGLQAVARNV 591 L D ++R VGVG++ D +L D+ L++ ++L +A + ++ E + + +++ Sbjct: 121 LLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKLRCKE--KWTFNGLIKHL 178 Query: 592 MGANLQKPQRVRMGPWDAYCLSYDQIKYACIDAFVSFEVGRKL 720 L K + R WD + L+ DQ YA DA+ + +KL Sbjct: 179 FKEQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKL 221
>Q9NVH0:EXDL2_HUMAN Exonuclease 3'-5' domain-like-containing protein 2 - Homo sapiens| (Human) Length = 496 Score = 60.8 bits (146), Expect = 1e-08 Identities = 39/111 (35%), Positives = 54/111 (48%) Frame = +1 Query: 391 VPQALSGFLADPNLRFVGVGVQEDVERLSDDHALEVANAVDLRGLAAEGMQMPELRQAGL 570 +P+ L LAD + VGVG ED +L D+ L V +DLR LA L Sbjct: 23 LPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSL 82 Query: 571 QAVARNVMGANLQKPQRVRMGPWDAYCLSYDQIKYACIDAFVSFEVGRKLL 723 +++A V+ L K +R WDA L+ DQ+ YA DA +S + LL Sbjct: 83 KSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHLL 133
>Q8VEG4:EXDL2_MOUSE Exonuclease 3'-5' domain-like-containing protein 2 - Mus musculus| (Mouse) Length = 496 Score = 58.9 bits (141), Expect = 4e-08 Identities = 38/111 (34%), Positives = 55/111 (49%) Frame = +1 Query: 391 VPQALSGFLADPNLRFVGVGVQEDVERLSDDHALEVANAVDLRGLAAEGMQMPELRQAGL 570 +P+ L LAD + VGVG ED +L D+ L V +DLR LA + L Sbjct: 23 LPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRGCLDLRYLAMKQGNNILCNGLSL 82 Query: 571 QAVARNVMGANLQKPQRVRMGPWDAYCLSYDQIKYACIDAFVSFEVGRKLL 723 +++A ++ L K +R WDA L+ DQ+ YA DA +S + LL Sbjct: 83 KSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHLL 133
>Q5UQM4:YR431_MIMIV Putative 3'-5' exonuclease R431 - Mimivirus| Length = 399 Score = 50.4 bits (119), Expect = 1e-05 Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 9/181 (4%) Frame = +1 Query: 205 VTNSGAAVEVWLQEIRSVLGDLVVGIDVEWRPSYGPSQNPVALLQLCVGRRCLIFQLLHA 384 VT+ V+ W++ L ++G+D E S G S+ ++++QL + +I Q+ Sbjct: 114 VTSDFQIVDNWIENNIYDLKQEIIGLDTETLIS-GKSEK-ISIIQLSTSKHNIIIQVNQM 171 Query: 385 DFVPQALSGFLADPNLRFVGVGVQEDVERLSDDHAL--EVANAVDLRGL-----AAEGMQ 543 + +PQ L+ D ++ VGV + D ++L ++ +DL L + + Sbjct: 172 NTLPQNLNKVFFDESIIKVGVAIDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFTKHIS 231 Query: 544 MPELRQAGLQAVARNVMGANLQK--PQRVRMGPWDAYCLSYDQIKYACIDAFVSFEVGRK 717 + GL+ +A +V+ ++ ++ W+ L+ DQ+KYA D+++S + + Sbjct: 232 INPKESIGLKILAAHVLDLYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNE 291 Query: 718 L 720 L Sbjct: 292 L 292
>Q9FNG3:Y5645_ARATH Uncharacterized protein At5g06450 - Arabidopsis thaliana (Mouse-ear| cress) Length = 206 Score = 43.9 bits (102), Expect = 0.001 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 13/149 (8%) Frame = +1 Query: 199 TTVTNSGAAVEVWLQEIR--SVL-GDLVVGIDVEWRPSYGPSQNP-------VALLQLCV 348 T S + +L IR S+L G+ V DV W + ++ ++ ++L Sbjct: 21 TIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLST 80 Query: 349 GRRCLIFQL---LHADFVPQALSGFLADPNLRFVGVGVQEDVERLSDDHALEVANAVDLR 519 CL +L H + + L F A + FVGV ++ED++ L ++H L + NA+++ Sbjct: 81 RNLCLFLRLPKPFHDNL--KDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVG 138 Query: 520 GLAAEGMQMPELRQAGLQAVARNVMGANL 606 LAAE L G + +A V+ ++L Sbjct: 139 KLAAEARGTLVLEFLGTRELAHRVLWSDL 167
>P34607:MUT7_CAEEL Probable exonuclease mut-7 - Caenorhabditis elegans| Length = 910 Score = 41.6 bits (96), Expect = 0.006 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 26/187 (13%) Frame = +1 Query: 244 EIRSVLGD---LVVGIDVEWRPS--YGPSQNPVALLQL----CVGR-RCLIFQLLHA--D 387 EI+S+ + + VG D EW+PS + +A++QL CV C+ + + D Sbjct: 419 EIKSLSDEPAPVYVGFDSEWKPSNLTAVHDSKIAIIQLFFKNCVWLVDCVELEKANMADD 478 Query: 388 FVPQALSGFLADPNLRFVGVGVQEDVERLSDDHAL-------EVANAVDLRGLA------ 528 + + S D ++ VG ++ D++ ++ AL + NA DL+ LA Sbjct: 479 WWQKFASRLFGDSPVKVVGFDMRNDLDAMATIPALKSSMKIEDTKNAFDLKRLAENVCDI 538 Query: 529 -AEGMQMPELRQAGLQAVARNVMGANLQKPQRVRMGPWDAYCLSYDQIKYACIDAFVSFE 705 E +++P+ + L + ++G L K + + W L QI YA +DA V E Sbjct: 539 DMEILELPK-KTFKLADLTHYLLGLELDKTE--QCSNWQCRPLRKKQIVYAALDAVVVVE 595 Query: 706 VGRKLLT 726 +K+L+ Sbjct: 596 TFKKILS 602
>P34603:YO63_CAEEL Uncharacterized protein ZK1098.3 - Caenorhabditis elegans| Length = 784 Score = 40.4 bits (93), Expect = 0.014 Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 22/188 (11%) Frame = +1 Query: 226 VEVWLQEIRSVLGDLVVGIDVEWRPSY--GPSQNPVALLQLCVGRRCLIFQLLHADFVP- 396 +E+ L E+ + + +G D E++P + S + +A++QL + + + D + Sbjct: 431 LEILLSELGELEEGMYIGYDSEFKPYHLIDVSTSRLAIIQLFFKDKAWLINCVAIDNLAS 490 Query: 397 ------QALSGFLADPNLRFVGVGVQEDVERLSDDHALE-------VANAVDLRGLA--- 528 + G VG +++D+E + ++ + N + ++ LA Sbjct: 491 RDDVWIRLYKGLFESNKFSIVGFDIRQDIEAMFTVPSINKNFKIENIQNVICVKSLAENV 550 Query: 529 -AEGMQMPEL--RQAGLQAVARNVMGANLQKPQRVRMGPWDAYCLSYDQIKYACIDAFVS 699 A M + L + + L +A +++G + K ++ G W L +QI YA +DA Sbjct: 551 NALSMDILNLSTKTSKLSVLADHLVGLKMDKSEQC--GNWQCRPLRRNQIIYAVMDAVAV 608 Query: 700 FEVGRKLL 723 FEV +K++ Sbjct: 609 FEVFQKIV 616
>O14405:GUN4_TRIRE Endoglucanase-4 precursor - Trichoderma reesei (Hypocrea jecorina)| Length = 344 Score = 35.4 bits (80), Expect = 0.44 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = -1 Query: 741 NSEVACEQLPANLEGDESVDAGVLDLIVGEAVGVPWAHPHPL 616 N ++ C + N +G SV AG D I+ + V VPW HP P+ Sbjct: 72 NPDIICHKNATNAKGHASVKAG--DTILFQWVPVPWPHPGPI 111
>Q7VDF8:MQO_PROMA Probable malate:quinone oxidoreductase - Prochlorococcus marinus| Length = 496 Score = 33.1 bits (74), Expect = 2.2 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 758 ESWKLCILMSSSYYCVQI*FLILGKGLGAILFWKN 862 E+W++ + ++ YCVQ FL LG G GA+ +N Sbjct: 222 ETWEISLANTAGTYCVQAPFLFLGAGGGALSLLQN 256
>P15415:COATA_BPI22 Coat protein A precursor - Bacteriophage I2-2| Length = 434 Score = 32.3 bits (72), Expect = 3.7 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = -1 Query: 210 GHGGDDHVRPEGHVGDERVGGHRMMDRSSVLAWA----TGWRSFRPQTTRVKRGSE 55 GHG D V +G V +G ++ D SVL+W T W F+ T+ +++G + Sbjct: 379 GHGCTDFVMFQGSVYQLDIGCDKLGDIKSVLSWVMYCLTFWYVFQSATSLLRKGEQ 434
>Q05536:BOFH_BRAOB Putative transcription factor BOFH - Brassica oleracea var.| botrytis (Cauliflower) Length = 415 Score = 32.0 bits (71), Expect = 4.9 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -1 Query: 702 EGDESVDAGVLDLIVGEAVGVPWAHPHPLRLLKVGAHDVARHGLQSGLAELRHLHPLRRE 523 +G+E D +D++ G VG+ HP + + G +VAR G ++GL L HL+ RE Sbjct: 210 DGNEGEDDDGMDIVNGSGVGMERQREHPFIVTEPG--EVAR-GKKNGLDYLFHLYEQCRE 266
>P03663:COATA_BPIKE Coat protein A precursor - Bacteriophage IKe| Length = 434 Score = 31.6 bits (70), Expect = 6.4 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = -1 Query: 210 GHGGDDHVRPEGHVGDERVGGHRMMDRSSVLAWA----TGWRSFRPQTTRVKRGSE 55 GHG + V +G V +G ++ D SVL+W T W F+ T+ +++G + Sbjct: 379 GHGCTNFVMYQGSVYQIEIGCDKLNDIKSVLSWVMYCLTFWYVFQSVTSLLRKGEQ 434 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 159,810,608 Number of extensions: 3285521 Number of successful extensions: 9438 Number of sequences better than 10.0: 14 Number of HSP's gapped: 9426 Number of HSP's successfully gapped: 14 Length of query: 380 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 265 Effective length of database: 69,142,514 Effective search space: 18322766210 Effective search space used: 18322766210 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
