Clone Name | FLbaf91i04 |
---|---|
Clone Library Name | barley_pub |
>gb|BT019050.1| Zea mays clone Contig571.F mRNA sequence Length = 907 Score = 182 bits (92), Expect = 2e-42 Identities = 350/436 (80%) Strand = Plus / Minus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||||||| | ||||| ||||||||||| |||| |||||| ||||||||| || || Sbjct: 775 tcgtcgggcttgacgttgagtggcgcccaagcttcggcccgcaccagaacccggtggcca 716 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||| || Sbjct: 715 cactgcagctctgcgtcggacacagctgcctcatcttccagctcctctacgccgactacg 656 Query: 392 tcccccaggctctgtcgggcttcctcgccgaccccaacctccggtttgttggcgtcggcg 451 ||||| || ||| ||| ||||||| ||||| | |||| || || |||||||||| Sbjct: 655 tccccggcgcgctggcggagttcctcggcgaccgcgggatccgcttcgtcggcgtcggcg 596 Query: 452 tgcaggaggacgtcgagcgcctcagcgacgaccacgccctcgaggtcgccaacgcggtcg 511 || ||| ||||| ||||| |||||||||||||||| || | ||| |||||||||| | Sbjct: 595 tggaggcggacgcggagcggctcagcgacgaccacggtctggtggtggccaacgcggagg 536 Query: 512 acctgcgtggcctcgcggcggaggggatgcaaatgccggagctccgccaggccggactgc 571 ||||||| |||| ||| |||||| ||||| | ||||| ||||||||||| || |||| Sbjct: 535 acctgcggggccgcgccgcggagcggatgaaccgcccggacctccgccaggcggggctgc 476 Query: 572 aggccgtggcgcgcaacgtcatgggcgccaaccttcagaagccgcagagggtgaggatgg 631 || | | || ||||||||||| |||||| ||||||||||||||| | ||| Sbjct: 475 gtgcgctcgtgcaagtcgtcatgggcgtcaacctcgtgaagccgcagagggtcaccatga 416 Query: 632 gcccatgggacgcctactgcctctcctacgatcagatcaagtacgcctgcatcgacgctt 691 ||| |||||||| | ||||||| |||||| |||||||||||||||||||||||||| | Sbjct: 415 gccgctgggacgcgtcctgcctcagctacgagcagatcaagtacgcctgcatcgacgcct 356 Query: 692 tcgtctccttcgaggt 707 ||||||| |||||||| Sbjct: 355 tcgtctctttcgaggt 340
>dbj|AK242290.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075191E07, full insert sequence Length = 998 Score = 159 bits (80), Expect = 3e-35 Identities = 113/124 (91%) Strand = Plus / Plus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 218 tcgtggggctcgacgtcgagtggcgccccagctacggccctgcgcagaaccccgtcgcgc 277 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 | |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || Sbjct: 278 tgctgcagctctgcgtcgaccgcaggtgcctcatcttccagctcctctacgccgactacg 337 Query: 392 tccc 395 |||| Sbjct: 338 tccc 341 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Plus Query: 547 ccggagctccgccaggccggactgcaggccgtggcgcgcaacgtcatgggcgccaacctt 606 ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| Sbjct: 493 ccggagctcagccaggccggcctgcaggccgtggtgcgcgccgtcatgggcgccgacctc 552 Query: 607 cagaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcag 666 |||||||||||||||| ||| ||| |||||||||| |||||||||| |||| || Sbjct: 553 gtcaagccgcagagggtgaccatgagccgctgggacgcctcctgcctctccaacgagcaa 612 Query: 667 atcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||| |||||||||||||||||| | ||||||||||||||| ||| ||| ||||||| Sbjct: 613 atccggtacgcctgcatcgacgcctacgtctccttcgaggtcggcaggaggctgctc 669 Score = 73.8 bits (37), Expect = 1e-09 Identities = 82/97 (84%) Strand = Plus / Plus Query: 150 caccgacacgttcgtcaccgacgtggccttcggggcggacgtgatcgtcaccaccgtgac 209 ||||||||||| ||||||||| ||||||||||| | | ||||||| |||||||||||| Sbjct: 93 caccgacacgtacgtcaccgaggtggccttcggcgacgccgtgatcaccaccaccgtgac 152 Query: 210 caactccggcgcggccgtggaggtctggctccaggag 246 ||||||||| |||||||||| ||||||| |||| Sbjct: 153 gtcctccggcgccgccgtggaggggtggctccgggag 189 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccctcttgacccttgtcgtct 83 ||||||||||||||||||||| Sbjct: 24 ccctcttgacccttgtcgtct 44
>ref|NM_001050310.1| Oryza sativa (japonica cultivar-group) Os01g0660800 (Os01g0660800) mRNA, complete cds Length = 600 Score = 159 bits (80), Expect = 3e-35 Identities = 113/124 (91%) Strand = Plus / Plus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 140 tcgtggggctcgacgtcgagtggcgccccagctacggccctgcgcagaaccccgtcgcgc 199 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 | |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || Sbjct: 200 tgctgcagctctgcgtcgaccgcaggtgcctcatcttccagctcctctacgccgactacg 259 Query: 392 tccc 395 |||| Sbjct: 260 tccc 263 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Plus Query: 547 ccggagctccgccaggccggactgcaggccgtggcgcgcaacgtcatgggcgccaacctt 606 ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| Sbjct: 415 ccggagctcagccaggccggcctgcaggccgtggtgcgcgccgtcatgggcgccgacctc 474 Query: 607 cagaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcag 666 |||||||||||||||| ||| ||| |||||||||| |||||||||| |||| || Sbjct: 475 gtcaagccgcagagggtgaccatgagccgctgggacgcctcctgcctctccaacgagcaa 534 Query: 667 atcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||| |||||||||||||||||| | ||||||||||||||| ||| ||| ||||||| Sbjct: 535 atccggtacgcctgcatcgacgcctacgtctccttcgaggtcggcaggaggctgctc 591 Score = 75.8 bits (38), Expect = 3e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 150 caccgacacgttcgtcaccgacgtggccttcggggcggacgtgatcgtcaccaccgtgac 209 ||||||||||| ||||||||| ||||||||||| | | ||||||| |||||||||||| Sbjct: 15 caccgacacgtacgtcaccgaggtggccttcggcgacgccgtgatcaccaccaccgtgac 74 Query: 210 caactccggcgcggccgtggaggtctggctccaggagatccg 251 ||||||||| |||||||||| ||||||| |||| |||| Sbjct: 75 gtcctccggcgccgccgtggaggggtggctccgggaggtccg 116
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 159 bits (80), Expect = 3e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 26961933 tcgtggggctcgacgtcgagtggcgccccagctacggccctgcgcagaaccccgtcgcgc 26961874 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 | |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || Sbjct: 26961873 tgctgcagctctgcgtcgaccgcaggtgcctcatcttccagctcctctacgccgactacg 26961814 Query: 392 tccc 395 |||| Sbjct: 26961813 tccc 26961810 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Minus Query: 547 ccggagctccgccaggccggactgcaggccgtggcgcgcaacgtcatgggcgccaacctt 606 ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| Sbjct: 26961658 ccggagctcagccaggccggcctgcaggccgtggtgcgcgccgtcatgggcgccgacctc 26961599 Query: 607 cagaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcag 666 |||||||||||||||| ||| ||| |||||||||| |||||||||| |||| || Sbjct: 26961598 gtcaagccgcagagggtgaccatgagccgctgggacgcctcctgcctctccaacgagcaa 26961539 Query: 667 atcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||| |||||||||||||||||| | ||||||||||||||| ||| ||| ||||||| Sbjct: 26961538 atccggtacgcctgcatcgacgcctacgtctccttcgaggtcggcaggaggctgctc 26961482 Score = 85.7 bits (43), Expect = 3e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 |||||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct: 30761962 tctgcgtcggccgccgctgcctcatcttccagatcctccacgcggactacgtccc 30762016 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 ||||||||||||||||||||||| |||||||| || |||||||||||| |||||| Sbjct: 30765864 tctgcgtcggccgccgctgcctcgtcttccagatcatccacgccgactacgtccc 30765918 Score = 75.8 bits (38), Expect = 3e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 150 caccgacacgttcgtcaccgacgtggccttcggggcggacgtgatcgtcaccaccgtgac 209 ||||||||||| ||||||||| ||||||||||| | | ||||||| |||||||||||| Sbjct: 26962058 caccgacacgtacgtcaccgaggtggccttcggcgacgccgtgatcaccaccaccgtgac 26961999 Query: 210 caactccggcgcggccgtggaggtctggctccaggagatccg 251 ||||||||| |||||||||| ||||||| |||| |||| Sbjct: 26961998 gtcctccggcgccgccgtggaggggtggctccgggaggtccg 26961957 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 accttgtcgtcgggatcgacgtcgagtggcgcccc 300 |||| ||||||||| |||||||||||||||||||| Sbjct: 30761884 acctcgtcgtcgggctcgacgtcgagtggcgcccc 30761918 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccctcttgacccttgtcgtct 83 ||||||||||||||||||||| Sbjct: 26962127 ccctcttgacccttgtcgtct 26962107
>dbj|AP004364.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445H04 Length = 202821 Score = 159 bits (80), Expect = 3e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 143578 tcgtggggctcgacgtcgagtggcgccccagctacggccctgcgcagaaccccgtcgcgc 143519 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 | |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || Sbjct: 143518 tgctgcagctctgcgtcgaccgcaggtgcctcatcttccagctcctctacgccgactacg 143459 Query: 392 tccc 395 |||| Sbjct: 143458 tccc 143455 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Minus Query: 547 ccggagctccgccaggccggactgcaggccgtggcgcgcaacgtcatgggcgccaacctt 606 ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| Sbjct: 143303 ccggagctcagccaggccggcctgcaggccgtggtgcgcgccgtcatgggcgccgacctc 143244 Query: 607 cagaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcag 666 |||||||||||||||| ||| ||| |||||||||| |||||||||| |||| || Sbjct: 143243 gtcaagccgcagagggtgaccatgagccgctgggacgcctcctgcctctccaacgagcaa 143184 Query: 667 atcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||| |||||||||||||||||| | ||||||||||||||| ||| ||| ||||||| Sbjct: 143183 atccggtacgcctgcatcgacgcctacgtctccttcgaggtcggcaggaggctgctc 143127 Score = 75.8 bits (38), Expect = 3e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 150 caccgacacgttcgtcaccgacgtggccttcggggcggacgtgatcgtcaccaccgtgac 209 ||||||||||| ||||||||| ||||||||||| | | ||||||| |||||||||||| Sbjct: 143703 caccgacacgtacgtcaccgaggtggccttcggcgacgccgtgatcaccaccaccgtgac 143644 Query: 210 caactccggcgcggccgtggaggtctggctccaggagatccg 251 ||||||||| |||||||||| ||||||| |||| |||| Sbjct: 143643 gtcctccggcgccgccgtggaggggtggctccgggaggtccg 143602 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccctcttgacccttgtcgtct 83 ||||||||||||||||||||| Sbjct: 143772 ccctcttgacccttgtcgtct 143752
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 159 bits (80), Expect = 3e-35 Identities = 113/124 (91%) Strand = Plus / Minus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 20764 tcgtggggctcgacgtcgagtggcgccccagctacggccctgcgcagaaccccgtcgcgc 20705 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 | |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || Sbjct: 20704 tgctgcagctctgcgtcgaccgcaggtgcctcatcttccagctcctctacgccgactacg 20645 Query: 392 tccc 395 |||| Sbjct: 20644 tccc 20641 Score = 145 bits (73), Expect = 4e-31 Identities = 151/177 (85%) Strand = Plus / Minus Query: 547 ccggagctccgccaggccggactgcaggccgtggcgcgcaacgtcatgggcgccaacctt 606 ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| Sbjct: 20489 ccggagctcagccaggccggcctgcaggccgtggtgcgcgccgtcatgggcgccgacctc 20430 Query: 607 cagaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcag 666 |||||||||||||||| ||| ||| |||||||||| |||||||||| |||| || Sbjct: 20429 gtcaagccgcagagggtgaccatgagccgctgggacgcctcctgcctctccaacgagcaa 20370 Query: 667 atcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||| |||||||||||||||||| | ||||||||||||||| ||| ||| ||||||| Sbjct: 20369 atccggtacgcctgcatcgacgcctacgtctccttcgaggtcggcaggaggctgctc 20313 Score = 75.8 bits (38), Expect = 3e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 150 caccgacacgttcgtcaccgacgtggccttcggggcggacgtgatcgtcaccaccgtgac 209 ||||||||||| ||||||||| ||||||||||| | | ||||||| |||||||||||| Sbjct: 20889 caccgacacgtacgtcaccgaggtggccttcggcgacgccgtgatcaccaccaccgtgac 20830 Query: 210 caactccggcgcggccgtggaggtctggctccaggagatccg 251 ||||||||| |||||||||| ||||||| |||| |||| Sbjct: 20829 gtcctccggcgccgccgtggaggggtggctccgggaggtccg 20788 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccctcttgacccttgtcgtct 83 ||||||||||||||||||||| Sbjct: 20958 ccctcttgacccttgtcgtct 20938
>gb|AY111131.1| Zea mays CL912_1 mRNA sequence Length = 832 Score = 113 bits (57), Expect = 1e-21 Identities = 102/117 (87%) Strand = Plus / Plus Query: 608 agaagccgcagagggtgaggatgggcccatgggacgcctactgcctctcctacgatcaga 667 ||||||||||| ||||||||| |||||| |||||||| | | ||||||| |||| |||| Sbjct: 519 agaagccgcagtgggtgaggacgggcccctgggacgcgtcatccctctccgacgagcaga 578 Query: 668 tcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccggaagctgctca 724 || |||||||| |||||||||||| ||||| |||||||||||||||| |||||||| Sbjct: 579 tcgagtacgccaccatcgacgcttttgtctctttcgaggttggccggatgctgctca 635 Score = 95.6 bits (48), Expect = 3e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 337 cagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtcccc 396 |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 248 cagctctgcgtcgggcgccgctgcctcatcttccagcttctccacgccgactacgtcccc 307 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Plus Query: 271 gtcgtcgggatcgacgtcgagtggcgccccagct 304 ||||||||| | |||||||||||||||||||||| Sbjct: 182 gtcgtcgggctggacgtcgagtggcgccccagct 215
>gb|AY112494.1| Zea mays CL780_1 mRNA sequence Length = 730 Score = 107 bits (54), Expect = 9e-20 Identities = 174/214 (81%) Strand = Plus / Plus Query: 272 tcgtcgggatcgacgtcgagtggcgccccagctacggcccctcccagaaccccgtcgcgc 331 |||||||| | ||||| ||||||||||| |||| |||||| ||||||||| || || Sbjct: 176 tcgtcgggcttgacgttgagtggcgcccaagcttcggcccgcaccagaacccggtggcca 235 Query: 332 tcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcg 391 ||||||||||||||||| | | ||||||||||||||||||||||| ||||||||| || Sbjct: 236 cactgcagctctgcgtcggacacagctgcctcatcttccagctcctctacgccgactacg 295 Query: 392 tcccccaggctctgtcgggcttcctcgccgaccccaacctccggtttgttggcgtcggcg 451 ||||| || ||| ||| ||||||| ||||| | |||| || || |||||||||| Sbjct: 296 tccccggcgcgctggcggagttcctcggcgaccgcgggatccgcttcgtcggcgtcggcg 355 Query: 452 tgcaggaggacgtcgagcgcctcagcgacgacca 485 || ||| ||||| ||||| |||||||||||||| Sbjct: 356 tggaggcggacgcggagcggctcagcgacgacca 389 Score = 85.7 bits (43), Expect = 3e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 637 tgggacgcctactgcctctcctacgatcagatcaagtacgcctgcatcgacgctttcgtc 696 |||||||| | ||||||| |||||| |||||||||||||||||||||||||| |||||| Sbjct: 398 tgggacgcgtcctgcctcagctacgagcagatcaagtacgcctgcatcgacgccttcgtc 457 Query: 697 tccttcgaggt 707 || |||||||| Sbjct: 458 tctttcgaggt 468
>emb|CR855074.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101A01, complete sequence Length = 111925 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Minus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | |||||||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 48068 ccccgtcgccgtgctgcagctctgcgtcgaccgccgctgcctcgtcttccagatcctcca 48009 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacccca 427 |||||||| | | ||| | || ||||| ||||||||||||| |||| Sbjct: 48008 cgccgactacttgcccgacgcgctgtcccgcttcctcgccgatccca 47962
>ref|NM_001058814.1| Oryza sativa (japonica cultivar-group) Os04g0225100 (Os04g0225100) mRNA, complete cds Length = 841 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Plus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | ||||| |||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 269 ccccgtcgccgtgctgcaactctgcgtcgaccgccgctgcctcgtcttccagatcctcca 328 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacccca 427 |||||||| ||| ||| | || ||||| ||||||||||||| |||| Sbjct: 329 cgccgactacgtgcccgacgcgctgtcccgcttcctcgccgatccca 375
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Minus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | ||||| |||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 8280035 ccccgtcgccgtgctgcaactctgcgtcgaccgccgctgcctcgtcttccagatcctcca 8279976 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacccca 427 |||||||| ||| ||| | || ||||| ||||||||||||| |||| Sbjct: 8279975 cgccgactacgtgcccgacgcgctgtcccgcttcctcgccgatccca 8279929
>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21, complete sequence Length = 130433 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Minus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | ||||| |||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 90548 ccccgtcgccgtgctgcaactctgcgtcgaccgccgctgcctcgtcttccagatcctcca 90489 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacccca 427 |||||||| ||| ||| | || ||||| ||||||||||||| |||| Sbjct: 90488 cgccgactacgtgcccgacgcgctgtcccgcttcctcgccgatccca 90442
>dbj|AK105234.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G11, full insert sequence Length = 841 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Plus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | ||||| |||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 269 ccccgtcgccgtgctgcaactctgcgtcgaccgccgctgcctcgtcttccagatcctcca 328 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacccca 427 |||||||| ||| ||| | || ||||| ||||||||||||| |||| Sbjct: 329 cgccgactacgtgcccgacgcgctgtcccgcttcctcgccgatccca 375
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 87.7 bits (44), Expect = 8e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| |||||||||||||||| |||| | ||||||||||||| | || Sbjct: 128384 cagaaccctgtcgcgctgctgcagctctgcgtcgaccgcaggtgcctcatcttcccgttc 128325 Query: 376 ctccacgccgacttcgtccc 395 |||||| |||||| |||||| Sbjct: 128324 ctccacaccgactacgtccc 128305
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 87.7 bits (44), Expect = 8e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| |||||||||||||||| |||| | ||||||||||||| | || Sbjct: 905766 cagaaccctgtcgcgctgctgcagctctgcgtcgaccgcaggtgcctcatcttcccgttc 905825 Query: 376 ctccacgccgacttcgtccc 395 |||||| |||||| |||||| Sbjct: 905826 ctccacaccgactacgtccc 905845
>ref|NM_001050716.1| Oryza sativa (japonica cultivar-group) Os01g0737600 (Os01g0737600) mRNA, complete cds Length = 678 Score = 85.7 bits (43), Expect = 3e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 |||||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct: 230 tctgcgtcggccgccgctgcctcatcttccagatcctccacgcggactacgtccc 284 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 accttgtcgtcgggatcgacgtcgagtggcgcccc 300 |||| ||||||||| |||||||||||||||||||| Sbjct: 152 acctcgtcgtcgggctcgacgtcgagtggcgcccc 186
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09 Length = 127973 Score = 85.7 bits (43), Expect = 3e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 |||||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct: 51237 tctgcgtcggccgccgctgcctcatcttccagatcctccacgcggactacgtccc 51291 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 ||||||||||||||||||||||| |||||||| || |||||||||||| |||||| Sbjct: 55139 tctgcgtcggccgccgctgcctcgtcttccagatcatccacgccgactacgtccc 55193 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 accttgtcgtcgggatcgacgtcgagtggcgcccc 300 |||| ||||||||| |||||||||||||||||||| Sbjct: 51159 acctcgtcgtcgggctcgacgtcgagtggcgcccc 51193
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 81.8 bits (41), Expect = 5e-12 Identities = 135/165 (81%), Gaps = 1/165 (0%) Strand = Plus / Minus Query: 559 caggccggactgcaggccgtggcgcgcaacgtcatgggcgccaaccttcagaagccgcag 618 |||||||| || |||||||||| || | | ||||||||||| |||| |||| |||| Sbjct: 8240505 caggccggcctacaggccgtggtgcacgtcatcatgggcgcccacctcgtcaagctgcag 8240446 Query: 619 agggtgaggatgggcccatgggacgcctactgcctctcctacgatcagatcaagtacgcc 678 ||||||| ||| ||| |||||||||| |||||||||| |||| ||||| |||| | Sbjct: 8240445 agggtgaccatgagccgctgggacgccttctgcctctccaacgagtagatctggtacac- 8240387 Query: 679 tgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||||||||||| | ||||||||||||||| ||||||| ||||||| Sbjct: 8240386 tgcatcgacgcctacgtctccttcgaggtcggccggaggctgctc 8240342 Score = 81.8 bits (41), Expect = 5e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||| |||| |||| | ||||||||||||| | || Sbjct: 8240748 cagaaccctgtcgcgctgctgcagctctgggtcgaccgcaggtgcctcatcttcccgttc 8240689 Query: 376 ctccacgccgact 388 ||||||||||||| Sbjct: 8240688 ctccacgccgact 8240676 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||||||| |||| | ||||||||||||| | || Sbjct: 16762993 cagaaccctgtcgcgctgttgcagctctgcgtcgaccgcaggtgcctcatcttcccgttc 16762934 Query: 376 ctccacgccgacttcgtccc 395 |||||| |||||| |||||| Sbjct: 16762933 ctccacaccgactacgtccc 16762914
>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_F06 Length = 130968 Score = 81.8 bits (41), Expect = 5e-12 Identities = 135/165 (81%), Gaps = 1/165 (0%) Strand = Plus / Minus Query: 559 caggccggactgcaggccgtggcgcgcaacgtcatgggcgccaaccttcagaagccgcag 618 |||||||| || |||||||||| || | | ||||||||||| |||| |||| |||| Sbjct: 72651 caggccggcctacaggccgtggtgcacgtcatcatgggcgcccacctcgtcaagctgcag 72592 Query: 619 agggtgaggatgggcccatgggacgcctactgcctctcctacgatcagatcaagtacgcc 678 ||||||| ||| ||| |||||||||| |||||||||| |||| ||||| |||| | Sbjct: 72591 agggtgaccatgagccgctgggacgccttctgcctctccaacgagtagatctggtacac- 72533 Query: 679 tgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||||||||||| | ||||||||||||||| ||||||| ||||||| Sbjct: 72532 tgcatcgacgcctacgtctccttcgaggtcggccggaggctgctc 72488 Score = 81.8 bits (41), Expect = 5e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||| |||| |||| | ||||||||||||| | || Sbjct: 72894 cagaaccctgtcgcgctgctgcagctctgggtcgaccgcaggtgcctcatcttcccgttc 72835 Query: 376 ctccacgccgact 388 ||||||||||||| Sbjct: 72834 ctccacgccgact 72822
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 81.8 bits (41), Expect = 5e-12 Identities = 135/165 (81%), Gaps = 1/165 (0%) Strand = Plus / Minus Query: 559 caggccggactgcaggccgtggcgcgcaacgtcatgggcgccaaccttcagaagccgcag 618 |||||||| || |||||||||| || | | ||||||||||| |||| |||| |||| Sbjct: 17176 caggccggcctacaggccgtggtgcacgtcatcatgggcgcccacctcgtcaagctgcag 17117 Query: 619 agggtgaggatgggcccatgggacgcctactgcctctcctacgatcagatcaagtacgcc 678 ||||||| ||| ||| |||||||||| |||||||||| |||| ||||| |||| | Sbjct: 17116 agggtgaccatgagccgctgggacgccttctgcctctccaacgagtagatctggtacac- 17058 Query: 679 tgcatcgacgctttcgtctccttcgaggttggccggaagctgctc 723 ||||||||||| | ||||||||||||||| ||||||| ||||||| Sbjct: 17057 tgcatcgacgcctacgtctccttcgaggtcggccggaggctgctc 17013 Score = 81.8 bits (41), Expect = 5e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||| |||| |||| | ||||||||||||| | || Sbjct: 17419 cagaaccctgtcgcgctgctgcagctctgggtcgaccgcaggtgcctcatcttcccgttc 17360 Query: 376 ctccacgccgact 388 ||||||||||||| Sbjct: 17359 ctccacgccgact 17347
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||||||| |||| | ||||||||||||| | || Sbjct: 140048 cagaaccctgtcgcgctgttgcagctctgcgtcgaccgcaggtgcctcatcttcccgttc 139989 Query: 376 ctccacgccgacttcgtccc 395 |||||| |||||| |||||| Sbjct: 139988 ctccacaccgactacgtccc 139969
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 316 cagaaccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctc 375 |||||||| |||||||| ||||||||||||||| |||| | ||||||||||||| | || Sbjct: 11235 cagaaccctgtcgcgctgttgcagctctgcgtcgaccgcaggtgcctcatcttcccgttc 11176 Query: 376 ctccacgccgacttcgtccc 395 |||||| |||||| |||||| Sbjct: 11175 ctccacaccgactacgtccc 11156
>ref|NM_001050717.1| Oryza sativa (japonica cultivar-group) Os01g0737700 (Os01g0737700) mRNA, complete cds Length = 672 Score = 77.8 bits (39), Expect = 8e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 341 tctgcgtcggccgccgctgcctcatcttccagctcctccacgccgacttcgtccc 395 ||||||||||||||||||||||| |||||||| || |||||||||||| |||||| Sbjct: 275 tctgcgtcggccgccgctgcctcgtcttccagatcatccacgccgactacgtccc 329
>gb|DQ245696.1| Zea mays clone 19389 mRNA sequence Length = 923 Score = 63.9 bits (32), Expect = 1e-06 Identities = 86/104 (82%) Strand = Plus / Plus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | |||||| ||||||||| || |||||||||| | |||||| ||||||| Sbjct: 257 ccccgtcgccgtgctgcagatctgcgtcgaccaccgctgcctcgtattccagatcctcca 316 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacc 424 ||||||| | ||||| | || ||||| | ||||||||||||| Sbjct: 317 agccgactacatccccgacgccctgtccaggttcctcgccgacc 360 Score = 56.0 bits (28), Expect = 3e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 668 tcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccgga 715 |||||||||||||| ||||||||||| ||| |||||||| ||||||| Sbjct: 604 tcaagtacgcctgcgccgacgctttcgcctcgttcgaggtcggccgga 651
>gb|DQ245694.1| Zea mays clone 19369 mRNA sequence Length = 920 Score = 63.9 bits (32), Expect = 1e-06 Identities = 86/104 (82%) Strand = Plus / Plus Query: 321 ccccgtcgcgctcctgcagctctgcgtcggccgccgctgcctcatcttccagctcctcca 380 ||||||||| | |||||| ||||||||| || |||||||||| | |||||| ||||||| Sbjct: 254 ccccgtcgccgtgctgcagatctgcgtcgaccaccgctgcctcgtattccagatcctcca 313 Query: 381 cgccgacttcgtcccccaggctctgtcgggcttcctcgccgacc 424 ||||||| | ||||| | || ||||| | ||||||||||||| Sbjct: 314 agccgactacatccccgacgccctgtccaggttcctcgccgacc 357 Score = 56.0 bits (28), Expect = 3e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 668 tcaagtacgcctgcatcgacgctttcgtctccttcgaggttggccgga 715 |||||||||||||| ||||||||||| ||| |||||||| ||||||| Sbjct: 601 tcaagtacgcctgcgccgacgctttcgcctcgttcgaggtcggccgga 648
>ref|NM_001065278.1| Oryza sativa (japonica cultivar-group) Os07g0112400 (Os07g0112400) mRNA, complete cds Length = 2259 Score = 61.9 bits (31), Expect = 5e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 337 cagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgac 387 |||||||||||||||| |||||||||| ||||||| ||| |||||||||| Sbjct: 268 cagctctgcgtcggccaccgctgcctcgtcttccacctcgcccacgccgac 318 Score = 46.1 bits (23), Expect = 0.28 Identities = 35/39 (89%) Strand = Plus / Plus Query: 334 ctgcagctctgcgtcggccgccgctgcctcatcttccag 372 |||||||||||||| ||| |||| |||||| |||||||| Sbjct: 1846 ctgcagctctgcgtgggcagccggtgcctcgtcttccag 1884
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 61.9 bits (31), Expect = 5e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 337 cagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgac 387 |||||||||||||||| |||||||||| ||||||| ||| |||||||||| Sbjct: 693639 cagctctgcgtcggccaccgctgcctcgtcttccacctcgcccacgccgac 693589 Score = 46.1 bits (23), Expect = 0.28 Identities = 35/39 (89%) Strand = Plus / Minus Query: 334 ctgcagctctgcgtcggccgccgctgcctcatcttccag 372 |||||||||||||| ||| |||| |||||| |||||||| Sbjct: 691283 ctgcagctctgcgtgggcagccggtgcctcgtcttccag 691245 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 373 ctcctccacgccgacttcgtccc 395 ||||||||||||||||||||||| Sbjct: 1529109 ctcctccacgccgacttcgtccc 1529087
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 61.9 bits (31), Expect = 5e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 337 cagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgac 387 |||||||||||||||| |||||||||| ||||||| ||| |||||||||| Sbjct: 32170 cagctctgcgtcggccaccgctgcctcgtcttccacctcgcccacgccgac 32120 Score = 46.1 bits (23), Expect = 0.28 Identities = 35/39 (89%) Strand = Plus / Minus Query: 334 ctgcagctctgcgtcggccgccgctgcctcatcttccag 372 |||||||||||||| ||| |||| |||||| |||||||| Sbjct: 29814 ctgcagctctgcgtgggcagccggtgcctcgtcttccag 29776
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 61.9 bits (31), Expect = 5e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 337 cagctctgcgtcggccgccgctgcctcatcttccagctcctccacgccgac 387 |||||||||||||||| |||||||||| ||||||| ||| |||||||||| Sbjct: 13446 cagctctgcgtcggccaccgctgcctcgtcttccacctcgcccacgccgac 13396 Score = 46.1 bits (23), Expect = 0.28 Identities = 35/39 (89%) Strand = Plus / Minus Query: 334 ctgcagctctgcgtcggccgccgctgcctcatcttccag 372 |||||||||||||| ||| |||| |||||| |||||||| Sbjct: 11090 ctgcagctctgcgtgggcagccggtgcctcgtcttccag 11052
>gb|AC016714.5| Homo sapiens BAC clone RP11-290E5 from 2, complete sequence Length = 56048 Score = 48.1 bits (24), Expect = 0.070 Identities = 24/24 (100%) Strand = Plus / Minus Query: 981 atttttaattttgtgttaatgtca 1004 |||||||||||||||||||||||| Sbjct: 47829 atttttaattttgtgttaatgtca 47806
>ref|NM_001048184.1| Rattus norvegicus Ras-related GTP binding C (predicted) (Rragc_predicted), mRNA gb|BC105622.1| Rattus norvegicus Ras-related GTP binding C (predicted), mRNA (cDNA clone MGC:125018 IMAGE:7454011), complete cds Length = 2548 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 161 ccgccgctgcctcttcttcctcctcctccacgccg 127
>ref|NM_017475.2| Mus musculus Ras-related GTP binding C (Rragc), mRNA Length = 2621 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 219 ccgccgctgcctcctcttcctcctcctccacgccg 185
>gb|DQ537335.1| Triticum aestivum clones BAC 1031P08; BAC 754K10; BAC 1344C16, complete sequence Length = 292102 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 354 ccgctgcctcatcttccagctcc 376 ||||||||||||||||||||||| Sbjct: 191552 ccgctgcctcatcttccagctcc 191530
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 354 ccgctgcctcatcttccagctcc 376 ||||||||||||||||||||||| Sbjct: 172604 ccgctgcctcatcttccagctcc 172582
>gb|BC005417.1| Mus musculus Ras-related GTP binding C, mRNA (cDNA clone MGC:5703 IMAGE:3495022), complete cds Length = 2576 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 167 ccgccgctgcctcctcttcctcctcctccacgccg 133
>dbj|AK150792.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015H15 product:Ras-related GTP binding C, full insert sequence Length = 2553 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 173 ccgccgctgcctcctcttcctcctcctccacgccg 139
>dbj|AK159355.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420018C12 product:Ras-related GTP binding C, full insert sequence Length = 2532 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 152 ccgccgctgcctcctcttcctcctcctccacgccg 118
>dbj|AK166658.1| Mus musculus 5 days embryo whole body cDNA, RIKEN full-length enriched library, clone:I0C0047L23 product:Ras-related GTP binding C, full insert sequence Length = 1304 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 165 ccgccgctgcctcctcttcctcctcctccacgccg 131
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 495 ggtcgccaacgcggtcgacctgc 517 ||||||||||||||||||||||| Sbjct: 1895205 ggtcgccaacgcggtcgacctgc 1895183
>dbj|AK015982.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930535I16 product:hypothetical protein, full insert sequence Length = 1068 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Plus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 374 ccgccgctgcctcctcttcctcctcctccacgccg 408
>gb|BC071245.1| Mus musculus Ras-related GTP binding C, mRNA (cDNA clone IMAGE:5099391), complete cds Length = 2964 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 178 ccgccgctgcctcctcttcctcctcctccacgccg 144
>dbj|AP006451.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1249D05 Length = 132526 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 373 ctcctccacgccgacttcgtccc 395 ||||||||||||||||||||||| Sbjct: 114698 ctcctccacgccgacttcgtccc 114676
>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete sequence Length = 223854 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 27741 ccgccgctgcctcctcttcctcctcctccacgccg 27707
>dbj|AB017616.1| Mus musculus YGR163w mRNA homologue, complete cds Length = 2507 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgccg 385 ||||||||||||| |||||| ||||||||||||| Sbjct: 140 ccgccgctgcctcctcttcctcctcctccacgccg 106
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 857 aagaattagacattgatggtga 878 |||||||||||||||||||||| Sbjct: 381390 aagaattagacattgatggtga 381369
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Minus Query: 369 ccagctcctccacgccgacttcgtcccccaggct 402 |||||||| ||||||||||||| ||| ||||||| Sbjct: 397733 ccagctccgccacgccgacttcatccgccaggct 397700
>gb|AF322048.1| Acrasis rosea chaperonin subunit alpha gene, partial cds Length = 1497 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Minus Query: 678 ctgcatcgacgctttcgtctccttcgaggttggc 711 ||||||||| |||||| ||||||||||| ||||| Sbjct: 946 ctgcatcgaagctttcctctccttcgagattggc 913
>emb|BX255917.3| Zebrafish DNA sequence from clone DKEY-1H6 in linkage group 20 Contains a novel gene, two transposase genes, a gene for a novel zinc finger protein and a gene for a novel protein similar to vertebrate MTHFD1, complete sequence Length = 218068 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 974 tataactatttttaattttgtg 995 |||||||||||||||||||||| Sbjct: 212972 tataactatttttaattttgtg 212951
>gb|AC021299.17| Homo sapiens chromosome 18, clone RP11-159K14, complete sequence Length = 168716 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 357 ctgcctcatcttccagctcctccacg 382 |||||||| ||||||||||||||||| Sbjct: 146174 ctgcctcagcttccagctcctccacg 146199
>emb|BX950369.1| Gallus gallus finished cDNA, clone ChEST327o10 Length = 1106 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 gcgtggcctcgcggcggagggg 537 |||||||||||||||||||||| Sbjct: 949 gcgtggcctcgcggcggagggg 928
>gb|AC174762.1| Gasterosteus aculeatus clone VMRC28-105C03, complete sequence Length = 136351 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 cctcatcttccagctcctccac 381 |||||||||||||||||||||| Sbjct: 46495 cctcatcttccagctcctccac 46516
>dbj|AK233200.1| Sus scrofa mRNA, clone:LVRM10099F05, expressed in liver Length = 1313 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 cgacaagagcatcaatccttt 1115 ||||||||||||||||||||| Sbjct: 956 cgacaagagcatcaatccttt 976
>gb|AC188388.2| Gallus gallus BAC clone CH261-117F4 from chromosome z, complete sequence Length = 182381 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 971 gactataactatttttaattt 991 ||||||||||||||||||||| Sbjct: 156038 gactataactatttttaattt 156018
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 945 ttgtgctgatttatgcatttt 965 ||||||||||||||||||||| Sbjct: 13696401 ttgtgctgatttatgcatttt 13696421
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 499 gccaacgcggtcgacctgcgt 519 ||||||||||||||||||||| Sbjct: 1288888 gccaacgcggtcgacctgcgt 1288908
>gb|AC099948.10| Mus musculus chromosome 10, clone RP23-19D21, complete sequence Length = 203197 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 975 ataactatttttaattttgtg 995 ||||||||||||||||||||| Sbjct: 188675 ataactatttttaattttgtg 188695
>ref|XM_364573.1| Magnaporthe grisea 70-15 hypothetical protein (MG09353.4) partial mRNA Length = 2181 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ccaccgtgaccaactccggcg 220 ||||||||||||||||||||| Sbjct: 1889 ccaccgtgaccaactccggcg 1909
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 736 tgagttgatgatttctgcggc 756 ||||||||||||||||||||| Sbjct: 1839163 tgagttgatgatttctgcggc 1839143
>gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204841 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 975 ataactatttttaattttgtg 995 ||||||||||||||||||||| Sbjct: 66514 ataactatttttaattttgtg 66534
>gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170819 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 975 ataactatttttaattttgtg 995 ||||||||||||||||||||| Sbjct: 79172 ataactatttttaattttgtg 79192
>gb|AC148406.12| Medicago truncatula clone mth2-46e9, complete sequence Length = 110272 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 955 ttatgcatttttaggggacta 975 ||||||||||||||||||||| Sbjct: 109845 ttatgcatttttaggggacta 109825
>gb|BC044539.1| Danio rerio hypothetical protein LOC402838, mRNA (cDNA clone IMAGE:3819023), partial cds Length = 1936 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 684 cgctcctgcagctctgcgtcg 664
>gb|BC054652.1| Danio rerio hypothetical protein LOC402838, mRNA (cDNA clone IMAGE:3818001), partial cds Length = 1936 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 684 cgctcctgcagctctgcgtcg 664
>dbj|AK159434.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420019P10 product:Ras-related GTP binding C, full insert sequence Length = 2554 Score = 42.1 bits (21), Expect = 4.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 351 ccgccgctgcctcatcttccagctcctccacgc 383 ||||||||||||| |||||| ||||||||||| Sbjct: 173 ccgccgctgcctcctcttcctcctcctccacgc 141
>gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, complete sequence Length = 173119 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 877 gatgaggattaacttcagagcaggg 901 ||||||| ||||||||||||||||| Sbjct: 98006 gatgaggcttaacttcagagcaggg 98030
>gb|AC093027.12| Homo sapiens 12q BAC RP11-701B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162322 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 357 ctgcctcatcttccagctcctccac 381 ||||||||||||||| ||||||||| Sbjct: 139773 ctgcctcatcttccacctcctccac 139749
>ref|XM_702967.1| PREDICTED: Danio rerio hypothetical protein LOC402838, transcript variant 6 (LOC402838), mRNA Length = 3835 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 705 cgctcctgcagctctgcgtcg 685
>ref|XM_702966.1| PREDICTED: Danio rerio hypothetical protein LOC402838, transcript variant 5 (LOC402838), mRNA Length = 3796 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 705 cgctcctgcagctctgcgtcg 685
>ref|XM_702965.1| PREDICTED: Danio rerio hypothetical protein LOC402838, transcript variant 4 (LOC402838), mRNA Length = 3706 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 705 cgctcctgcagctctgcgtcg 685
>ref|XM_702964.1| PREDICTED: Danio rerio hypothetical protein LOC402838, transcript variant 3 (LOC402838), mRNA Length = 3526 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 705 cgctcctgcagctctgcgtcg 685
>ref|XM_680531.1| PREDICTED: Danio rerio hypothetical protein LOC402838, transcript variant 1 (LOC402838), mRNA Length = 3883 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 705 cgctcctgcagctctgcgtcg 685
>ref|XM_686845.1| PREDICTED: Danio rerio similar to loss of heterozygosity, 11, chromosomal region 2, gene A homolog (LOC563484), mRNA Length = 1983 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 cgctcctgcagctctgcgtcg 349 ||||||||||||||||||||| Sbjct: 1346 cgctcctgcagctctgcgtcg 1326
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 caactccggcgcggccgtgga 230 ||||||||||||||||||||| Sbjct: 410006 caactccggcgcggccgtgga 409986
>emb|AL645788.6| Zebrafish DNA sequence from clone BUSM1-17K08 Contains the 5' end of the alcam gene for activated leukocyte cell adhesion molecule, complete sequence Length = 85448 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 973 ctataactatttttaattttgtgtt 997 ||||||||||||| ||||||||||| Sbjct: 56881 ctataactattttcaattttgtgtt 56857
>gb|AC011069.7|AC011069 Drosophila melanogaster, chromosome X, region 12B-12C, BAC clone BACR11H20, complete sequence Length = 168384 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 945 ttgtgctgatttatgcatttt 965 ||||||||||||||||||||| Sbjct: 132622 ttgtgctgatttatgcatttt 132642
>emb|BX537347.12| Zebrafish DNA sequence from clone RP71-78P1 in linkage group 4, complete sequence Length = 197064 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 973 ctataactatttttaattttgtgtt 997 ||||||||||||| ||||||||||| Sbjct: 169817 ctataactattttcaattttgtgtt 169841
>ref|NM_208784.1| Eremothecium gossypii ACR028Cp (ACR028C), mRNA Length = 1806 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 caactccggcgcggccgtgga 230 ||||||||||||||||||||| Sbjct: 501 caactccggcgcggccgtgga 521
>emb|Z98941.2|HS204E5 Human DNA sequence from clone XX-204E5 on chromosome 12, complete sequence Length = 129192 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 618 gagggtgaggatgggcccatgggac 642 |||||||||| |||||||||||||| Sbjct: 110238 gagggtgaggttgggcccatgggac 110214
>gb|AC006274.1|AC006274 Homo sapiens chromosome 19, cosmid R29335, complete sequence Length = 39924 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 gccgccgctgcctcatcttcc 370 ||||||||||||||||||||| Sbjct: 14890 gccgccgctgcctcatcttcc 14910
>emb|CR394550.5| Zebrafish DNA sequence from clone CH211-231O11 in linkage group 10, complete sequence Length = 170825 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 973 ctataactatttttaattttgtgtt 997 ||||||||||||| ||||||||||| Sbjct: 53114 ctataactattttcaattttgtgtt 53090 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 174,035,025 Number of extensions: 9716632 Number of successful extensions: 208934 Number of sequences better than 10.0: 80 Number of HSP's gapped: 208921 Number of HSP's successfully gapped: 117 Length of query: 1140 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1117 Effective length of database: 18,503,978,556 Effective search space: 20668944047052 Effective search space used: 20668944047052 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)